Lsi05G001320 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Genomic DNA, chromosome 3, BAC clone:F4B12
Location	chr05 : 1972145 .. 1976825 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATCTCTTAGAGAGGTAGGAGAGAGAGTTTGGAAAATCAAAATGCATGGTAGTGGAGATTTTGGCAAAGTGAGGAAGAAAGTTCTTCCCCTATCCTCTCTCTCAAAGTTGGCAGGCATAGCAAAGCAATCCATCAAAACTCCATAAGCCATATCCATCCATCCATTAAACCTCCTCAAATGTTGCACACCCAGAACCTTCTCTCCTCCAATTTCCCTTTTTTCACCCTCTCTCTAACCCACAATCACAAACTCTTTCTCTCTCCTCCAACCCACTCATCTCCTTTCTCCTCCTCTTTTCACAGACCCATCTCCTTCCACTCTGTTTCTTCACCCACAACCCACCAATGCTTTTGCTTACCCCATTTCTTTGAGCTCGCAGATGCCACTTTTCTTGATGATAATGGCCCAGTTGAACTCCCATCCACCATTTTTGCTACCAGTGATGACCCTTCTTCTCTCCAAGTTGCTACCAGTGTTCTTCTTACAGGGGCCATCTCCGTCTTCCTCTTTCGGTCCCTCCGCCGCCGTGCTAAGCGGGTCAAAGAACTGGTACTATTTACTACATTTCTTTTGACTCTCTCTGGCTTATACGATTTTGTGCTTTTTGAGTCTAGAAATGAATTGGGGTTTGCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTGCTATGTGTTCGAAGAAATTCTTCATAGAAGCTGCCTGCAATTGCTAAGTCATTCACTAAATGGTTAAATTCAGTATGGAAATTCTATTGATTTGCTTGGTCTTGTATATTCTCATTCAAGTGGAAGGTAGAGTAGTTTTTAATGAATTCTAAAGGATGAACAAGAAAAATTCAGCTGATATGGTGACCGGCCATGGCTAGCTGGATCTAAGAGTTGTTTGTATATTCTGCACTACCTCCTGTCCTCTTTTGGGCCATCAAGGATGCCATGTCAGTTACAAAGAAGCTGAGAATATTGGGTTGGGGACAAGAAATTTTTGTACATATGGCCCAAATTTCACGCCCAATATGTCATTTGACATACATTTCTTTTAAGAAGGAAACAAGACTTTTTATTGATGAAATGGGACTTATGCGCAAAGTACATAGATCCTGAAGGAAGAAAAGAAAAAGAATGCTAAAAGAACATTAATAAATGAAAAATGAACATCCCAAATATTACATAAAACATGAAAAAAGAGCCTGCAAAATGATGGAAAAACCATTGCAACAGGATGGGGCTTTGAGACAGCTAACTTCAAATGAGCAAAACATGTGAGAGCACGAGAAAACTTCCAGATTACCAAAAACAAGGCCATTTGACCTAGATTGTGAAAACAATGGAGAATAATCTTTAGTTGATGTCACAAACTACTTGCTAATGCTTTTTTTAGAGCGGCAAGTATGAGTGAGAGAGTAAGGAGGAGCGCGAGCGTGAGGAAGTGGGGGAGAAAGAGCCCTAGCTTGTGAGAGCACTATTATATTGGATTAGTTGAACCCGAGCATGAGTGCGGAGAGTGACATAAGAGAAAGGTTATACATTCTTAATTTCAAAATCGGGGTTGCACACTATTTTGGCTGTAAAATTTGGGTCATCCGTACCAAAATCTTGAGGACATTTGATTGTGTTAGTAATTTTCTTCACTGCCCATGCCTCATTGCACGCTGCTGGAAATAGTTGGGTTGAAAATTAGAAGCCATTGTCATATGGTGATTCGAGAAGGTCAGGCTTCATTGGTATAAACTGTTAAGTATATACTCAAACCTAAGAGTTGCCGTCTAGTGATCGTTCACGTGGAATCAGATTATGGAGTTATAAATTTGAATCTCAAAACTGTCGTTTTCTTCCCGATTGATATTAAAGAGTTTGTGTTGGAATTTGTGAGTCAAATTAATATTTGAGCTCATGCATAAAGAGAGTTCGATGAATATTAACCAAATATTCAATGTATTCTAACTAATCAACTTAAATTTTGGGTCTTGTGTTAGCTTAACCTTAATAATTTATGGTTATACGTGCAACCGGATGTTTAACCTTAACTTTTGGAGGAATTTGAACTACTCAAAATTGGCTTAAACTTTTGTAGTGGCCAGTCTGATTTATTTATTTATTTATCATTATTATTTTGTATTACTGGAAGATCTTTGAATGTTATGTATATATTCTGGAATCATAATATGTTTTGCTGTAAGGTTGGGAGGACAGGGTGGATTGGAGAATGTTTGAAGGGAACTGTCTTAGATTTTGGGGAATGGGCCAATCTAGCAGAATACTATGCATCCTCGTCTTCTAAGCGTTCACTTTTGAGTTCTTTTTTTACAATAATTCCAATATAATAAACATTTACTGGCTTTTATTCTTTTATGAACGGATTATCTTCTCACTATTTCTTTGCAATATTTTACATTGTAACTTTTCCCCAATGCAATTAAAAGTGTTTCAGATTATTATTTTTTCTTTCCTATTCTTTCATTGCTTTGCTTTACTTGTTTTGTTTTCTCTGCTGGAAGTCAAATTTCCATTTCAAATTTTTTTTTTTTTTTTTTGTTGTTCTTGTGGGGGGTAAAGAACATTTTACTCAATCTCATTCCATATCAGTCTTGGCATGCTGCTTTTGCAAAGTGCAATTTCTCTTATCCAGCCTAAGTCATCTGAAGCGATTCTGAACTTTCAGATTTATTGTGTTGATTTCTTTTGTTACTATAAACCATTGGAAATTTTTTTGACTTTATGTGGCCATTTTAGAAATTTAGGTCAGCTGGAGTAAAAAAGTCTCTGAAGGAGGAAGCAATGGATAGTTTGAAAGCAATTAGTACAGGTCCAATTGCATCAAAGTCAACACCTTCACCCATACAGGCATTCTTGGGAGCAATAGCAGCTGGTGTTATTGCACTAATCTTATATAAATTCACCACTACCATCGAAGCTGCTCTGAACCGACAGACAGTGTCTGATAACTTCTCGGTATGCTCTCGTGTTTACTTCATGTTTATAATTTATATATCTTTCATCTATTTCTTTTGGCCAACTATGGGAGCCTGGGAGGATTATCATTTCTCATTCACGTCATCCAAGGTAACATGATTTGAGCTAGACAGTGTTGGACATGTGTTCCATGTTTTTCACTCAAGATAACCATTTGATTGATATCTTGTACATTGCATTAACAAATGGATGAAGATGTGTGTCTGACAATGAAATTAACAAACAAAAACCTTTGTGGATTGATGTTCTCCTGGGTTTGGCTCATATAACCTCAGAATGTCGTTTAACAATTGGTTTCCATCTCTTTTAGGTTCGACAACTGACGATAACGATAAGGTAACTTCCTCAACTTACTCTAACTTCACTTGCAGATAGATAAAAGATTAGTGATCAATTCCGTATCTCTTATATGCAGAACTATTGTGAACGGGTTATGCTACCTTGCAACATTTGTTTTCGGAATTAATGCGATTGGTTTATTCCTTTATTCTGGTCAGTTGGCCATGAATTCTGTCATGGAAGAAGGTTCCAAAGATAAAGAACCTAAAGCTAAAGGTGATAAGCAAGTTAGCCCACCAAATTCAACAGCTGAAACGACTATCGATAGCACCGAATCAAGCAACAGTAAGGATGATCAAAGTTCAAGTAATTTGCAGTAATGGAAGAGAATCCCTTCTGATCAAACTTCGGCTATGTTGGCAGCCTTTTGTAAAGGTGGTGTGCTTCAATTTAATCATGCATTTTTAACAATCCTCTTCTTCATTTCCAGTAGCTCTCTGTCATCTGTGATCATTATATTGTAAACGATACTCGGAAAAAAAAAAAAGTATACAATTAGGCAGTATCTGCAGAATATATTTCACCCTGCTAACACAAAACCTTGGATGAACAATGTATAGAATGTTGCCTACTAAGTTCATCAGCCAGTTTAAGTCCATTGACCCAAATTTCTTTGTTAATGGGTTATCAAAAGCACCAAATTCCTCTACTAGCACAAGTCATTGCCCTTTTTTCAGCTCAGTTAAATCATGGACTAGAGAATTGGTGCCGTAGGTAGAGCAGATGCTAAGCCTAATGGTTCTAATAAGCCTGGGCTTATGAAGTTTGGGCTTGTGCTTTATTCTGTGCAAATGGATCTGTGTATAACTTGAATTTAGATTTAATTTGTGGATTTATAATTTGTAAGCATTAACCACTTAGACAGCTTAGATTAGCTCTTTTTTAAACCACTTGGACAGTCAATCCAAATGAGCTCTAAATATTTGTAGAATTACTTGTTGTATGAACTTAACTCATAAGCTAAAACACATGACACTAAATCACTTTGAAACTGTACATAATATATAATCATATGTTGCAGGATTGCAGGATGCAGGTGAGCATATGCTTTATGGAAATGATGGATGGACCAATGCCACAACATATAAGTTAAATTCATGAAGAAGTGATATAAAGATCTTCCATTCCAATGCTGTGCTTAAAGAGAGCCTAATTACAGCTGAGGTATGGGAGTGAAGGTTAAAAGAATAATAGAAATAATTGAAAGTTGCTGCTGCTCTTATTTATAGTGCTGAGAATCATATTATAGATCTACTGTTGTCCTCTCTTTCTAAAGAGTAAAGATACCTTCAAGGAAGTTTGTACACTTTTCTTCTCTTTGAGTACAAATCTTGACTTAGCAAGAAAATTTCCCTCCAA

mRNA sequence

AAAAAATCTCTTAGAGAGGTAGGAGAGAGAGTTTGGAAAATCAAAATGCATGGTAGTGGAGATTTTGGCAAAGTGAGGAAGAAAGTTCTTCCCCTATCCTCTCTCTCAAAGTTGGCAGGCATAGCAAAGCAATCCATCAAAACTCCATAAGCCATATCCATCCATCCATTAAACCTCCTCAAATGTTGCACACCCAGAACCTTCTCTCCTCCAATTTCCCTTTTTTCACCCTCTCTCTAACCCACAATCACAAACTCTTTCTCTCTCCTCCAACCCACTCATCTCCTTTCTCCTCCTCTTTTCACAGACCCATCTCCTTCCACTCTGTTTCTTCACCCACAACCCACCAATGCTTTTGCTTACCCCATTTCTTTGAGCTCGCAGATGCCACTTTTCTTGATGATAATGGCCCAGTTGAACTCCCATCCACCATTTTTGCTACCAGTGATGACCCTTCTTCTCTCCAAGTTGCTACCAGTGTTCTTCTTACAGGGGCCATCTCCGTCTTCCTCTTTCGGTCCCTCCGCCGCCGTGCTAAGCGGGTCAAAGAACTGGTCAGCTGGAGTAAAAAAGTCTCTGAAGGAGGAAGCAATGGATAGTTTGAAAGCAATTAGTACAGGTCCAATTGCATCAAAGTCAACACCTTCACCCATACAGGCATTCTTGGGAGCAATAGCAGCTGGTGTTATTGCACTAATCTTATATAAATTCACCACTACCATCGAAGCTGCTCTGAACCGACAGACAGTGTCTGATAACTTCTCGGTTCGACAACTGACGATAACGATAAGAACTATTGTGAACGGGTTATGCTACCTTGCAACATTTGTTTTCGGAATTAATGCGATTGGTTTATTCCTTTATTCTGGTCAGTTGGCCATGAATTCTGTCATGGAAGAAGGTTCCAAAGATAAAGAACCTAAAGCTAAAGGTGATAAGCAAGTTAGCCCACCAAATTCAACAGCTGAAACGACTATCGATAGCACCGAATCAAGCAACAGATTGCAGGATGCAGGTGAGCATATGCTTTATGGAAATGATGGATGGACCAATGCCACAACATATAAGTTAAATTCATGAAGAAGTGATATAAAGATCTTCCATTCCAATGCTGTGCTTAAAGAGAGCCTAATTACAGCTGAGGTATGGGAGTGAAGGTTAAAAGAATAATAGAAATAATTGAAAGTTGCTGCTGCTCTTATTTATAGTGCTGAGAATCATATTATAGATCTACTGTTGTCCTCTCTTTCTAAAGAGTAAAGATACCTTCAAGGAAGTTTGTACACTTTTCTTCTCTTTGAGTACAAATCTTGACTTAGCAAGAAAATTTCCCTCCAA

Coding sequence (CDS)

ATGCCACTTTTCTTGATGATAATGGCCCAGTTGAACTCCCATCCACCATTTTTGCTACCAGTGATGACCCTTCTTCTCTCCAAGTTGCTACCAGTGTTCTTCTTACAGGGGCCATCTCCGTCTTCCTCTTTCGGTCCCTCCGCCGCCGTGCTAAGCGGGTCAAAGAACTGGTCAGCTGGAGTAAAAAAGTCTCTGAAGGAGGAAGCAATGGATAGTTTGAAAGCAATTAGTACAGGTCCAATTGCATCAAAGTCAACACCTTCACCCATACAGGCATTCTTGGGAGCAATAGCAGCTGGTGTTATTGCACTAATCTTATATAAATTCACCACTACCATCGAAGCTGCTCTGAACCGACAGACAGTGTCTGATAACTTCTCGGTTCGACAACTGACGATAACGATAAGAACTATTGTGAACGGGTTATGCTACCTTGCAACATTTGTTTTCGGAATTAATGCGATTGGTTTATTCCTTTATTCTGGTCAGTTGGCCATGAATTCTGTCATGGAAGAAGGTTCCAAAGATAAAGAACCTAAAGCTAAAGGTGATAAGCAAGTTAGCCCACCAAATTCAACAGCTGAAACGACTATCGATAGCACCGAATCAAGCAACAGATTGCAGGATGCAGGTGAGCATATGCTTTATGGAAATGATGGATGGACCAATGCCACAACATATAAGTTAAATTCATGA

Protein sequence

MPLFLMIMAQLNSHPPFLLPVMTLLLSKLLPVFFLQGPSPSSSFGPSAAVLSGSKNWSAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQAFLGAIAAGVIALILYKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDKEPKAKGDKQVSPPNSTAETTIDSTESSNRLQDAGEHMLYGNDGWTNATTYKLNS

Homology

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BLAST of Lsi05G001320 vs. TrEMBL
Match: A0A0A0LAG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236050 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-66
Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = 1


Query: 48  AAVLSGSKNW-SAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQAFLGAIAAGVIALIL 107
           + + SGS+ + S GVKKSLKEEAMDSLKAISTGPI SKSTPSPIQAFLGAIAAGVIALIL
Sbjct: 46  SGLFSGSEKFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALIL 105

Query: 108 YKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAM 167
           YKFTTTIEA+LNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAM
Sbjct: 106 YKFTTTIEASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAM 165

Query: 168 NSVMEEGSKDKEPKAKGDKQVSPPNSTAETTIDSTESSNRLQD 210
           NSVMEEGSKD EPKAK D+QVSPP STAETT+DSTESSN   D
Sbjct: 166 NSVMEEGSKDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDD 208

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BLAST of Lsi05G001320 vs. TrEMBL
Match: W9R7B4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012166 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 4.6e-45
Identity = 102/155 (65.81%), Postives = 129/155 (83.23%), Query Frame = 1


Query: 58  SAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQAFLGAIAAGVIALILYKFTTTIEAAL 117
           S+GVKKSLKEEA+D+LKA+ +  I SK  PSP+QA LGAI+AGVIA+ILYKFTTTIEAAL
Sbjct: 125 SSGVKKSLKEEALDNLKAMGSASIESKGPPSPVQALLGAISAGVIAVILYKFTTTIEAAL 184

Query: 118 NRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDK 177
           N+QT+SD++S RQ+TIT+RTIVNGLCYLATF+FGIN+IGLFLY+GQLA+NS M EGS D+
Sbjct: 185 NQQTISDSYSARQITITVRTIVNGLCYLATFIFGINSIGLFLYAGQLAINSFM-EGSTDE 244

Query: 178 EPKAKGDKQVSPPNSTAETTIDSTESSNRLQDAGE 213
           E ++KG +Q+S  NST E    + +SS   Q + +
Sbjct: 245 ETESKGGEQLSSTNSTVENPTSAGDSSEDNQSSDD 278

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BLAST of Lsi05G001320 vs. TrEMBL
Match: B9SB97_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649730 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.9e-45
Identity = 101/152 (66.45%), Postives = 127/152 (83.55%), Query Frame = 1


Query: 58  SAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQAFLGAIAAGVIALILYKFTTTIEAAL 117
           S+G KK++KEEA+DSLKA+ +  I ++  PSP+Q FLG ++A VIALILYKFTTTIEAAL
Sbjct: 128 SSGAKKTMKEEALDSLKAMGSASIDAQKPPSPLQTFLGGVSAAVIALILYKFTTTIEAAL 187

Query: 118 NRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDK 177
           NRQTVSDNFSVRQ+TIT+RTI+NGLCYLATFVFG+N++GLFLYSGQLA+NS M EGS  +
Sbjct: 188 NRQTVSDNFSVRQITITVRTIINGLCYLATFVFGLNSVGLFLYSGQLAINSFM-EGSTSE 247

Query: 178 EPKAKGDKQVSPPNSTAETTIDSTESSNRLQD 210
           E ++KG++Q    NS  E+ IDSTES++   D
Sbjct: 248 ESESKGNEQSGSLNSAPESPIDSTESNSSQGD 278

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BLAST of Lsi05G001320 vs. TrEMBL
Match: A0A067LBT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15296 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-44
Identity = 100/152 (65.79%), Postives = 126/152 (82.89%), Query Frame = 1


Query: 58  SAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQAFLGAIAAGVIALILYKFTTTIEAAL 117
           S+GVKKS+KEEA+DSLKA+ +  I +   PSP+Q  LG I+AGVIALILYKFTTTIEAAL
Sbjct: 134 SSGVKKSIKEEALDSLKAMGSVSIDAGKPPSPVQTLLGGISAGVIALILYKFTTTIEAAL 193

Query: 118 NRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDK 177
           NRQT+SD++SVRQ+TITIRTI+NGLCYLATFVFG+N++GLFLYSGQLA+NS ME+ S + 
Sbjct: 194 NRQTISDSYSVRQITITIRTIINGLCYLATFVFGLNSVGLFLYSGQLAINSFMEDSSSES 253

Query: 178 EPKAKGDKQVSPPNSTAETTIDSTESSNRLQD 210
           E  +KG++Q SPPNST+E+   S +  +   D
Sbjct: 254 E--SKGNEQSSPPNSTSESAAASADLKSNQAD 283

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BLAST of Lsi05G001320 vs. TrEMBL
Match: V4UR94_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009151mg PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.9e-44
Identity = 99/149 (66.44%), Postives = 121/149 (81.21%), Query Frame = 1


Query: 58  SAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQAFLGAIAAGVIALILYKFTTTIEAAL 117
           S+G KKSLK+EA+D+LKA+ +  I +K  PSP+QA LG + AGVIA+ILYKFTTTIEAAL
Sbjct: 119 SSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTTIEAAL 178

Query: 118 NRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDK 177
           NRQT+SDNFSVRQ+TITIRTIVNGLCYLATFVFGIN++GLFLYSGQLA+NS  E+ S  K
Sbjct: 179 NRQTISDNFSVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQLALNSFTEDSSSSK 238

Query: 178 EPKAKGDKQVSPPNSTAETTIDSTESSNR 207
           E +  G++Q    NSTAE   D+  +S +
Sbjct: 239 ETENIGEQQSGSLNSTAENATDTELNSGK 267

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BLAST of Lsi05G001320 vs. TAIR10
Match: AT3G15110.1 (AT3G15110.1 unknown protein)

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-40
Identity = 94/156 (60.26%), Postives = 113/156 (72.44%), Query Frame = 1


Query: 58  SAGVKKSLKEEAMDSLKAISTGPI-ASKSTPSPIQAFLGAIAAGVIALILYKFTTTIEAA 117
           S G KKSLKEEAMD+LKA+S+ PI    STPS  QAFLGAIAAGVIALILYKFT T+E+ 
Sbjct: 120 STGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYKFTVTVESG 179

Query: 118 LNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKD 177
           LNRQT+SDNFSVRQ+T+T+RTI+NG+CYLATFVFG+NA GL LYSGQLA N    E S +
Sbjct: 180 LNRQTISDNFSVRQITVTVRTIINGICYLATFVFGLNAFGLLLYSGQLAFN----EDSAE 239

Query: 178 KEPKAKGDKQVSPPNSTAETTIDSTESSNRLQDAGE 213
           +  KA      + P  ++         SN  Q +G+
Sbjct: 240 ENMKA-----TTQPGDSSSGDNSEVNKSNEDQSSGD 266

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BLAST of Lsi05G001320 vs. NCBI nr
Match: gi|700202504|gb|KGN57637.1| (hypothetical protein Csa_3G236050 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 3.0e-66
Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = 1


Query: 48  AAVLSGSKNW-SAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQAFLGAIAAGVIALIL 107
           + + SGS+ + S GVKKSLKEEAMDSLKAISTGPI SKSTPSPIQAFLGAIAAGVIALIL
Sbjct: 46  SGLFSGSEKFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALIL 105

Query: 108 YKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAM 167
           YKFTTTIEA+LNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAM
Sbjct: 106 YKFTTTIEASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAM 165

Query: 168 NSVMEEGSKDKEPKAKGDKQVSPPNSTAETTIDSTESSNRLQD 210
           NSVMEEGSKD EPKAK D+QVSPP STAETT+DSTESSN   D
Sbjct: 166 NSVMEEGSKDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDD 208

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BLAST of Lsi05G001320 vs. NCBI nr
Match: gi|659112411|ref|XP_008456207.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496210 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 5.1e-66
Identity = 161/237 (67.93%), Postives = 175/237 (73.84%), Query Frame = 1


Query: 2   PLFLMIMAQLNSHPPFLLPVMTLLLS----------KLLPVFFLQGPSPSSSFGPSAAVL 61
           P+    ++ L +H  F LP  T L            +L P  F    +PSS    ++ +L
Sbjct: 497 PITFHSISPLTTHRCFCLPQFTDLADATFLDDNGPVELPPTIFATTDNPSSLQVATSVLL 556

Query: 62  SGS-------------------KNWSAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQA 121
           +G+                   K  SAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQA
Sbjct: 557 TGAISVFLFRSLRRRAKRVKELKFRSAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQA 616

Query: 122 FLGAIAAGVIALILYKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGI 181
           FLGAIAAGVIALILYKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGI
Sbjct: 617 FLGAIAAGVIALILYKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGI 676

Query: 182 NAIGLFLYSGQLAMNSVMEEGSKDKEPKAKGDKQVSPPNSTAETTIDSTESSNRLQD 210
           NAIGLFLYSGQLAMNSVMEEGSKDKEPKAK D+QVSPP STAETT++STESSN   D
Sbjct: 677 NAIGLFLYSGQLAMNSVMEEGSKDKEPKAKRDEQVSPPTSTAETTLNSTESSNSKDD 733

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BLAST of Lsi05G001320 vs. NCBI nr
Match: gi|778688583|ref|XP_011652784.1| (PREDICTED: uncharacterized protein LOC101221005 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 1.3e-64
Identity = 158/237 (66.67%), Postives = 171/237 (72.15%), Query Frame = 1


Query: 2   PLFLMIMAQLNSHPPFLLPVMTLLLS----------KLLPVFFLQGPSPSSSFGPSAAVL 61
           P+    ++ L +H  F LP  T L            +L P  F     PSS    ++ +L
Sbjct: 609 PITFHSVSPLTNHRCFCLPQFTDLADATFLDDNGPVELPPTIFATTDDPSSLQVATSVLL 668

Query: 62  SGS-------------------KNWSAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQA 121
           +G+                   K  S GVKKSLKEEAMDSLKAISTGPI SKSTPSPIQA
Sbjct: 669 TGAISVFLFRSLRRRAKRVKELKFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQA 728

Query: 122 FLGAIAAGVIALILYKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGI 181
           FLGAIAAGVIALILYKFTTTIEA+LNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGI
Sbjct: 729 FLGAIAAGVIALILYKFTTTIEASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGI 788

Query: 182 NAIGLFLYSGQLAMNSVMEEGSKDKEPKAKGDKQVSPPNSTAETTIDSTESSNRLQD 210
           NAIGLFLYSGQLAMNSVMEEGSKD EPKAK D+QVSPP STAETT+DSTESSN   D
Sbjct: 789 NAIGLFLYSGQLAMNSVMEEGSKDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDD 845

[Close]

BLAST of Lsi05G001320 vs. NCBI nr
Match: gi|951033686|ref|XP_014515790.1| (PREDICTED: uncharacterized protein LOC106773596 isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 199.5 bits (506), Expect = 6.3e-48
Identity = 113/190 (59.47%), Postives = 144/190 (75.79%), Query Frame = 1


Query: 20  PVMTLLLSKLLPVFFLQGPSPSSSFGPSAAVLSGSKNWSAGVKKSLKEEAMDSLKAISTG 79
           P  +LL  K LPVF L  PSPSSSF PSAA L+ S   S+GVK SLKEEA+DSLKA+ + 
Sbjct: 24  PTTSLLPFKSLPVFSLLAPSPSSSFAPSAAGLNVSNKPSSGVK-SLKEEALDSLKALGSA 83

Query: 80  PIASKSTPSPIQAFLGAIAAGVIALILYKFTTTIEAALNRQTVSDNFSVRQLTITIRTIV 139
            + +K  PSP+Q  LG ++AGVIALILYKF +TIE ALNRQT+SDN+SVRQ+TIT+RTIV
Sbjct: 84  SVDAKGPPSPVQTLLGGVSAGVIALILYKFASTIEGALNRQTISDNYSVRQITITVRTIV 143

Query: 140 NGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDKEPKAKGDKQVSPPNSTAETTID 199
           NGL YLATFVFG+N++GLFLYSGQLA+ S+M   S +KE ++K  +Q +    + E T +
Sbjct: 144 NGLTYLATFVFGLNSLGLFLYSGQLAIKSIMGGDSTEKETESKSTEQSNSSKLSIENTTE 203

Query: 200 STESSNRLQD 210
           +TE S R ++
Sbjct: 204 NTELSGRKEE 212

[Close]

BLAST of Lsi05G001320 vs. NCBI nr
Match: gi|658029128|ref|XP_008350007.1| (PREDICTED: uncharacterized protein LOC103413308 [Malus domestica])

HSP 1 Score: 191.0 bits (484), Expect = 2.2e-45
Identity = 112/195 (57.44%), Postives = 144/195 (73.85%), Query Frame = 1


Query: 12  NSHPPFLLPVMTLLLSKLLPVFFLQGPSPSSSFGPSAAVLSGSKNWSAGVKKSLKEEAMD 71
           N  P  L    ++LL+  + VF  +      S    A      K  S+GVKKSLK+EA+D
Sbjct: 94  NDDPSSLQVATSVLLTGAITVFLFR------SLRRRAKRAKELKYRSSGVKKSLKDEALD 153

Query: 72  SLKAISTGPIASKSTPSPIQAFLGAIAAGVIALILYKFTTTIEAALNRQTVSDNFSVRQL 131
           SLKA+STG + +K  PSP+QA LG I+AGVIALILYKFTTTIEA+LNRQT+SDNFSVRQ+
Sbjct: 154 SLKALSTGSVEAKGPPSPVQALLGGISAGVIALILYKFTTTIEASLNRQTISDNFSVRQI 213

Query: 132 TITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDKEPKAKGDKQVSPPN 191
           TITIRTI+NGLCYLATFVFGINA+GL LY+GQLA+NS+ME+ ++D +   +G++Q    N
Sbjct: 214 TITIRTIINGLCYLATFVFGINAVGLVLYAGQLAINSIMEDINEDTQ--TQGEEQSGSLN 273

Query: 192 STAETTIDSTESSNR 207
           ST E+  +S E+SN+
Sbjct: 274 STVESPTNSGENSNK 280

The following BLAST results are available for this feature:

BLAST of Lsi05G001320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G001320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAG2_CUCSA	2.1e-66	88.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236050 PE=4 SV=1	[more]
W9R7B4_9ROSA	4.6e-45	65.81	Uncharacterized protein OS=Morus notabilis GN=L484_012166 PE=4 SV=1	[more]
B9SB97_RICCO	5.9e-45	66.45	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649730 PE=4 SV=1	[more]
A0A067LBT5_JATCU	1.3e-44	65.79	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15296 PE=4 SV=1	[more]
V4UR94_9ROSI	3.9e-44	66.44	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009151mg PE=4 SV=1	[more]

BLAST of Lsi05G001320 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15110.1	1.8e-40	60.26	unknown protein	[more]

BLAST of Lsi05G001320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202504\|gb\|KGN57637.1\|	3.0e-66	88.34	hypothetical protein Csa_3G236050 [Cucumis sativus]	[more]
gi\|659112411\|ref\|XP_008456207.1\|	5.1e-66	67.93	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496210 [Cucumis me...	[more]
gi\|778688583\|ref\|XP_011652784.1\|	1.3e-64	66.67	PREDICTED: uncharacterized protein LOC101221005 [Cucumis sativus]	[more]
gi\|951033686\|ref\|XP_014515790.1\|	6.3e-48	59.47	PREDICTED: uncharacterized protein LOC106773596 isoform X2 [Vigna radiata var. r...	[more]
gi\|658029128\|ref\|XP_008350007.1\|	2.2e-45	57.44	PREDICTED: uncharacterized protein LOC103413308 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021434	DUF3082

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001320.1	Lsi05G001320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021434	Protein of unknown function DUF3082	PFAM	PF11282	DUF3082	coord: 87..164 score: 3.9
None	No IPR available	PANTHER	PTHR35733	FAMILY NOT NAMED	coord: 58..216 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001320	Csa3G236050	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001320	CSPI03G19510	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001320	Cucsa.032450	Cucumber (Gy14) v1	cgylsiB003
Lsi05G001320	CmaCh04G005560	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001320	CmoCh04G005900	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001320	Cla004286	Watermelon (97103) v1	lsiwmB361
Lsi05G001320	MELO3C019395	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001320	ClCG05G009210	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001320	Cla97C05G091530	Watermelon (97103) v2	lsiwmbB329
Lsi05G001320	Bhi01G001148	Wax gourd	lsiwgoB431
Lsi05G001320	Cp4.1LG01g01740	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001320	CsGy3G019430	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001320	Carg13181	Silver-seed gourd	carlsiB039
Lsi05G001320	CsaV3_3G019570	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001320	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001320	Silver-seed gourd	carlsiB595
Lsi05G001320	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001320	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001320	Cucurbita pepo (Zucchini)	cpelsiB177