CmaCh04G005560 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G005560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_19
Location	Cma_Chr04 : 2816316 .. 2819943 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTGGATGGTAGTGGATGGATAGGTTGGGGGTAAATGATGAGATCTTTGGGAATCCCATCTCTCCATAGTTGCAGGCTCCCAAACCCATCAAATTCCAGGCGCCATATCCATTAACCTTCCTCAAATGTTGCACACCCTCAACCTTCTCTCCTCCTCCAATTTCCCCCTCTCTCTCTCTCTAACTCACAATCTCCTTCTCTCTCCTCCGCCCTTCTCCTCTCTCCACCGACCCATTACCTCCCCCTCTGTTCCTCCCCTCCGAACTCACCAATGCTTCTGCTTACCCCAATTCTCTGAACTCTCCGACGCCGCCACCTCTTTTCCCGATGACGATGGCCCAATTGAACTCCCATCCACCATTTTTGCTACCACTGATGACCCTTCTTCTATCCAAGTCGCTACCAGTGTTCTCCTTACTGGGGCTATCTCCGTCTTCCTCTTTCGCTCCCTTCGCCGCCGTGCCAAGCGGGTCAAAGAGCTGGTACCCTTTACTGCATTTCTTTTTTTAAGTTTTGACTCTTTGGAATACACGTTTTGTGATTGTTTTAGTCTAGGAATGAATTGGGGTTCTGCTGCTTTCTTATTCCTTTGCCTCATTTTTTTGCACGCCATGTGTTTGAAGAAAGTCTTCACTATAGGGTTCAACTCGGTATCAAATTTGTTATAATGTAATTGGGGTCTTATGTATTCTTAGTCTAGTGCCGAGTAGAGTAGTTATATGAAAAAGTAAAATTCATTTGAAGTGGTGGCTGGCCATGGCTACCTAGATATAGGAGCTGTTTGTTCATTCTGCAGTGTCTTCCGGCCTCTTTTTTTCTCCCTCAAGGAAGTCATATCAGTTACGAAAGGAGCTGAAATATTGGATGGGGGACAATTGATTATGGTAGCTGTGAGATCCCACTTCCTTAGAGAGGGAAACGGAACATTTTTTTATAAGGGTGTGGAAACCTCTCCCTGGCAAACATGTTTCCAAACCGTGAGGTTGACGGCTATTCGTAACGGGCCAAAACGGACAGTATCTATTAGTGGTGAGCTTGGGCTGTTACAAATGGTATTAAAACTAGGCACCGAACGGTATGCTAGCGAGGACGTTGGGCTCTGTCTGCAAGGGGTAGATTTTGAGATCCTACATCGGTCGGAAGGGGGAACGAAATATTTTTTATAAGGGTGTGAAAACCTGTCCCTAACAAACACGTTTCCAAAATGTAAGGTTGACGGCGATTCATAACGGGCCAAAGCGAACAATATCTGCTAGCGGTGAGTTTGGGTTGTTACAAATGGCTAGACACGGAGCGGTGCGCCTGCGAGAATGCTGAGTCCCAAAGAGGGGTGAATTGTGAGATCTCACATCAGTTGGAGAAGGAAATAAAACATTTTTTTTACAAAGGTGTGGAAACCTCTCCATGTCAAACACGTTTTAAAACCGTGAGGTTGACGACAATACGTAACGGACTAAAGCGGAAAATATCTACTAGCGATGGACTTAGATTATTGCATCAGTGATTCACTAATTTTATGGACTGTTCATATCTTCCTGCCTCTTTTTTTCCCTCAAGGAAGTCATATCAGTTACGAAGAAGCTGAAAATATTGGATGGGGGGCAATTAATTATGGTAGTGATGTACTAATTTTATGGACTGTTCATGCCTCAATGTTGGAACATCTTTGAAGGATATATTTAGATTCTGGAATCAGAGAATGTTTGAACGTAACATACAAGCAATGAACTTAATGGTTCCTTGAATTGATTTCTTTTGTTACCATGTAACAATTGAAAGTTCTATGACTTTATGTGCCCATTTTAGAAATTCAGGTCTGCTGGAGTTAAGAAGTCTCTAAAGGAGGAAGCAATGGAGAGCCTGAAAGCAATTAGTACAGGTCCAATTCAATCAAAGTCTAAACCTTCACCTGTACAAGCATTCTTGGGAGCTATAGCAGCCGGTGTTATTGCATTGATCTTATATAAGTTCACCACTACCATTGAAGCTGCTCTGAACCGACAGACTGTGTCCGATAACTTCTCGGTACGCTCTCGTGGTTACTTCATCCTTATATATGTTTTGATTATTTCATTGTCTTTCTCATCTGGACAGCTAATGGTAATATGATTTGAGCTGGAAATAGTTCAACAAGTGTTGCTTGTTTTTCACTAAGAGAACTGTTGGATTAATATCTTGTAACTTGTATTAACAAACAAGAAAATTTGAAACCTTTGTGGATTGATGTTCTGCTGGTTTTCTCTTCTTTTAGGTTCGACAACTGACGATAACGATAAGGTAACTTCCTCGCCTTGTTTTAACATATCTTGCAGTTAGATGAAACACTAGAGTCCGATTCTTATCTCGTATTTGCAGAACTATCGTGAACGGAATATGCTACCTCGCGACATTTGTTTTCGGAATCAATGCTGTTGGGTTATTCCTTTACTCTGGTCAGTTGGCATTAAACTCTGTCATGGAAGAAGGTTCAGAAGATAAAGAACTTGCAACTAAAGGTGATAAGCAAGTTAGCTCGCCGAACTCAACCGTTGAAACAACCCTCGATGGCACCGAATCAAGCAGCAGCAAAGATGATCAAAGTTGAAGTAACTTGCAGTGATGGAAGAGAATCCGCATGGGTAAGATTTTGGCTGTTTTGGTTGCCATTTGTGAATGCTATCTGCTTTGATTGATAGTGCATTTTTAGTATCATCTTCTTCATTTTGGGTAGCTCTCTGTCATCTGTGATTATTATTATATGGGTATATACACACAGAAAATATAGTCTATGATTAGGCAGCAATCTGCACAATATATTAATGCTCTGCTGACACAAAACTATGGATGAACAATGTATTTTATAAGTCTAGATTTATATAGCTCGAAATGCCTCGTGTTTAGGATTTGGACAAGAACATGGAAACTAGATTTAGCAACTGATGACCTCCCGACTTTCCTTTGCATCCCCCTACTACATGATCACGTTATCTACTTTAGTTAAAGTATTTCTAAGAGAGGACTATCTTCATAGGTCAACACGAGTTTATTCAACATTCACTCACATTCTTCCTAACAAAATTTCTAGGTTGCTTAAAAAAGGTGGACCTTGTTAGTATAAGTAGTCAACTTTTTGTTCTTTTAAGCATTTCTTAACCATCATATCCCTCGGATTGCCTTCATTTGAAAATGATCTTGGTTTATTTATACATCACTACTTTATCCAAAGTCGAGACCACTAGTAAGATTGTAGTTGCACCAAATATGAAAAATTGACCCATATTTTAAAAGTTTTAGTTTTGAACTCGGGAAAGAACCAATTTGACCATCATACTTGGTCAAACCTGACACAAAAATTCCATTGATGGCACCTCTCATTAGAATCTTTTTCTTGAAATTCATGGGGCTTTCTCTTCTTTTGTTTGAGCTTTTTCAGAAGGAACCATGAAAAAGTAAAGGAAAACAAAAAGTGAGAGCAATCAAATTCCAAGGCAGTGAGATATATTTGTTTGATTTGTTTGGGTGTTTATGCTTTGTTTGTGGACACTTTTCCTTAAGAACACAACAGCCATTGTTTTTCACAAGTTTTGCAAATCTTGTGAAAAAGGGCGTGTTTGAATTAACTTTGTTAATGATTACGAACGACCAAG

mRNA sequence

GAAGTGGATGGTAGTGGATGGATAGGTTGGGGGTAAATGATGAGATCTTTGGGAATCCCATCTCTCCATAGTTGCAGGCTCCCAAACCCATCAAATTCCAGGCGCCATATCCATTAACCTTCCTCAAATGTTGCACACCCTCAACCTTCTCTCCTCCTCCAATTTCCCCCTCTCTCTCTCTCTAACTCACAATCTCCTTCTCTCTCCTCCGCCCTTCTCCTCTCTCCACCGACCCATTACCTCCCCCTCTGTTCCTCCCCTCCGAACTCACCAATGCTTCTGCTTACCCCAATTCTCTGAACTCTCCGACGCCGCCACCTCTTTTCCCGATGACGATGGCCCAATTGAACTCCCATCCACCATTTTTGCTACCACTGATGACCCTTCTTCTATCCAAGTCGCTACCAGTGTTCTCCTTACTGGGGCTATCTCCGTCTTCCTCTTTCGCTCCCTTCGCCGCCGTGCCAAGCGGGTCAAAGAGCTGAAATTCAGGTCTGCTGGAGTTAAGAAGTCTCTAAAGGAGGAAGCAATGGAGAGCCTGAAAGCAATTAGTACAGGTCCAATTCAATCAAAGTCTAAACCTTCACCTGTACAAGCATTCTTGGGAGCTATAGCAGCCGGTGTTATTGCATTGATCTTATATAAGTTCACCACTACCATTGAAGCTGCTCTGAACCGACAGACTGTGTCCGATAACTTCTCGGTTCGACAACTGACGATAACGATAAGAACTATCGTGAACGGAATATGCTACCTCGCGACATTTGTTTTCGGAATCAATGCTGTTGGGTTATTCCTTTACTCTGGTCAGTTGGCATTAAACTCTGTCATGGAAGAAGGTTCAGAAGATAAAGAACTTGCAACTAAAGGTGATAAGCAAGTTAGCTCGCCGAACTCAACCGTTGAAACAACCCTCGATGGCACCGAATCAAGCAGCAGCAAAGATGATCAAAGTTGAAGTAACTTGCAGTGATGGAAGAGAATCCGCATGGAAGGAACCATGAAAAAGTAAAGGAAAACAAAAAGTGAGAGCAATCAAATTCCAAGGCAGTGAGATATATTTGTTTGATTTGTTTGGGTGTTTATGCTTTGTTTGTGGACACTTTTCCTTAAGAACACAACAGCCATTGTTTTTCACAAGTTTTGCAAATCTTGTGAAAAAGGGCGTGTTTGAATTAACTTTGTTAATGATTACGAACGACCAAG

Coding sequence (CDS)

ATGTTGCACACCCTCAACCTTCTCTCCTCCTCCAATTTCCCCCTCTCTCTCTCTCTAACTCACAATCTCCTTCTCTCTCCTCCGCCCTTCTCCTCTCTCCACCGACCCATTACCTCCCCCTCTGTTCCTCCCCTCCGAACTCACCAATGCTTCTGCTTACCCCAATTCTCTGAACTCTCCGACGCCGCCACCTCTTTTCCCGATGACGATGGCCCAATTGAACTCCCATCCACCATTTTTGCTACCACTGATGACCCTTCTTCTATCCAAGTCGCTACCAGTGTTCTCCTTACTGGGGCTATCTCCGTCTTCCTCTTTCGCTCCCTTCGCCGCCGTGCCAAGCGGGTCAAAGAGCTGAAATTCAGGTCTGCTGGAGTTAAGAAGTCTCTAAAGGAGGAAGCAATGGAGAGCCTGAAAGCAATTAGTACAGGTCCAATTCAATCAAAGTCTAAACCTTCACCTGTACAAGCATTCTTGGGAGCTATAGCAGCCGGTGTTATTGCATTGATCTTATATAAGTTCACCACTACCATTGAAGCTGCTCTGAACCGACAGACTGTGTCCGATAACTTCTCGGTTCGACAACTGACGATAACGATAAGAACTATCGTGAACGGAATATGCTACCTCGCGACATTTGTTTTCGGAATCAATGCTGTTGGGTTATTCCTTTACTCTGGTCAGTTGGCATTAAACTCTGTCATGGAAGAAGGTTCAGAAGATAAAGAACTTGCAACTAAAGGTGATAAGCAAGTTAGCTCGCCGAACTCAACCGTTGAAACAACCCTCGATGGCACCGAATCAAGCAGCAGCAAAGATGATCAAAGTTGA

Protein sequence

MLHTLNLLSSSNFPLSLSLTHNLLLSPPPFSSLHRPITSPSVPPLRTHQCFCLPQFSELSDAATSFPDDDGPIELPSTIFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRVKELKFRSAGVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNSVMEEGSEDKELATKGDKQVSSPNSTVETTLDGTESSSSKDDQS

Homology

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BLAST of CmaCh04G005560 vs. TrEMBL
Match: A0A067ETL5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023825mg PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 4.7e-73
Identity = 174/279 (62.37%), Postives = 210/279 (75.27%), Query Frame = 1


Query: 1   MLHTLNLLSSSNFPLSLSLTHNLLLSPPPFSSLHRPITSPSVPPLRTH--QCFCLPQFSE 60
           ML T +LLS  NFP ++S  H+    P   + L +P  S S  P R    + +CL Q  E
Sbjct: 1   MLQTHHLLSL-NFPFTVS--HH----PQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQE 60

Query: 61  LSDAATS-FPDDDGPIELPSTIFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRVK 120
            +   T+    ++GP+ELP +IFATTD+PSS+QVATSVLLTGAISVFLFR+LRRRAKR K
Sbjct: 61  PTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAK 120

Query: 121 ELKFRSAGVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYKFTTT 180
           ELKFRS+G KKSLK+EA+++LKA+ +  I +K  PSPVQA LG + AGVIA+ILYKFTTT
Sbjct: 121 ELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTT 180

Query: 181 IEAALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNSVMEE 240
           IEAALNRQT+SDNFSVRQ+TITIRTIVNG+CYLATFVFGIN+VGLFLYSGQLALNS  E+
Sbjct: 181 IEAALNRQTISDNFSVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQLALNSFTED 240

Query: 241 GSEDKELATKGDKQVSSPNSTVETTLDGTESSSSKDDQS 277
            S  KE    G++Q  S NST E   D TE +S K+DQS
Sbjct: 241 SSSSKETENIGEQQSGSLNSTAENATD-TELNSGKEDQS 271

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BLAST of CmaCh04G005560 vs. TrEMBL
Match: V4UR94_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009151mg PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 4.7e-73
Identity = 174/279 (62.37%), Postives = 210/279 (75.27%), Query Frame = 1


Query: 1   MLHTLNLLSSSNFPLSLSLTHNLLLSPPPFSSLHRPITSPSVPPLRTH--QCFCLPQFSE 60
           ML T +LLS  NFP ++S  H+    P   + L +P  S S  P R    + +CL Q  E
Sbjct: 1   MLQTHHLLSL-NFPFTVS--HH----PQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQE 60

Query: 61  LSDAATS-FPDDDGPIELPSTIFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRVK 120
            +   T+    ++GP+ELP +IFATTD+PSS+QVATSVLLTGAISVFLFR+LRRRAKR K
Sbjct: 61  PTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAK 120

Query: 121 ELKFRSAGVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYKFTTT 180
           ELKFRS+G KKSLK+EA+++LKA+ +  I +K  PSPVQA LG + AGVIA+ILYKFTTT
Sbjct: 121 ELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTT 180

Query: 181 IEAALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNSVMEE 240
           IEAALNRQT+SDNFSVRQ+TITIRTIVNG+CYLATFVFGIN+VGLFLYSGQLALNS  E+
Sbjct: 181 IEAALNRQTISDNFSVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQLALNSFTED 240

Query: 241 GSEDKELATKGDKQVSSPNSTVETTLDGTESSSSKDDQS 277
            S  KE    G++Q  S NST E   D TE +S K+DQS
Sbjct: 241 SSSSKETENIGEQQSGSLNSTAENATD-TELNSGKEDQS 271

[Close]

BLAST of CmaCh04G005560 vs. TrEMBL
Match: W9R7B4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012166 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 6.4e-70
Identity = 168/273 (61.54%), Postives = 207/273 (75.82%), Query Frame = 1


Query: 10  SSNFPLSLSLTHNLLLSPPPFSSLHRPITSPSVPPLRTHQCFCLPQFSELSDAATSFPDD 69
           +SNFP SLS  H L    P  +  HRP       P R  Q +   Q +     +T+ P++
Sbjct: 11  TSNFPFSLSHHHFL---SPSLNFPHRPRLRTLYSP-RPKQPWLAAQATSEPTTSTAKPEE 70

Query: 70  D--GPIEL--PST-IFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRVKELKFRSA 129
           +  GP+E   PST IFAT DDPS IQVATSVLLTGAISVFLFR+LRRRA+R KELKFRS+
Sbjct: 71  EEGGPVEFFTPSTPIFATDDDPSPIQVATSVLLTGAISVFLFRALRRRARRAKELKFRSS 130

Query: 130 GVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYKFTTTIEAALNR 189
           GVKKSLKEEA+++LKA+ +  I+SK  PSPVQA LGAI+AGVIA+ILYKFTTTIEAALN+
Sbjct: 131 GVKKSLKEEALDNLKAMGSASIESKGPPSPVQALLGAISAGVIAVILYKFTTTIEAALNQ 190

Query: 190 QTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNSVMEEGSEDKEL 249
           QT+SD++S RQ+TIT+RTIVNG+CYLATF+FGIN++GLFLY+GQLA+NS M EGS D+E 
Sbjct: 191 QTISDSYSARQITITVRTIVNGLCYLATFIFGINSIGLFLYAGQLAINSFM-EGSTDEET 250

Query: 250 ATKGDKQVSSPNSTVETTL---DGTESSSSKDD 275
            +KG +Q+SS NSTVE      D +E + S DD
Sbjct: 251 ESKGGEQLSSTNSTVENPTSAGDSSEDNQSSDD 278

[Close]

BLAST of CmaCh04G005560 vs. TrEMBL
Match: B9I1E4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10000g PE=4 SV=2)

HSP 1 Score: 269.2 bits (687), Expect = 5.4e-69
Identity = 171/284 (60.21%), Postives = 205/284 (72.18%), Query Frame = 1


Query: 3   HTLNLLSSSNFPLSLSLTHN------LLLSPPPFSSLHRPITSPSVPPLRTHQCFCLPQF 62
           H  + LS   FPLS   T++       L  PP F+    P    ++P  R      L Q 
Sbjct: 7   HNFHPLSPQIFPLSHHHTNHHLDPLKFLYKPPIFT----PFNLSALPRSRPDPPLWLAQL 66

Query: 63  SELSDAATSFPDDDGPIEL---PSTIFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRA 122
            E +      P+++GPIE+     +IFAT+DDPSSIQVATSVLLTGAISVFLFRSLRRRA
Sbjct: 67  PEQAPE----PEEEGPIEILRSSPSIFATSDDPSSIQVATSVLLTGAISVFLFRSLRRRA 126

Query: 123 KRVKELKFRSAGVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYK 182
           KR KELKFRS+G KK+LKEEA++SLK   + PI  K  PSPVQAFLGAI+AGVIALILYK
Sbjct: 127 KRSKELKFRSSGAKKTLKEEALDSLKTFGSAPIDVKKPPSPVQAFLGAISAGVIALILYK 186

Query: 183 FTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNS 242
           F+TTIEA+LNRQTVSDNFSVRQ+TIT+RTIVNG+CYLATFVFGIN+VGLFLYS QLA NS
Sbjct: 187 FSTTIEASLNRQTVSDNFSVRQITITVRTIVNGLCYLATFVFGINSVGLFLYSAQLAFNS 246

Query: 243 VMEEGSED-KELATKGDKQVSSPNSTVETTLDGTESSSSKDDQS 277
           +ME G+++  E  T G  Q  S NST ++  DG E +SS+ DQ+
Sbjct: 247 LMEAGTDEVTESTTSG--QSGSSNSTSDSATDGAELTSSQGDQN 280

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BLAST of CmaCh04G005560 vs. TrEMBL
Match: B9SB97_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649730 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.5e-68
Identity = 164/276 (59.42%), Postives = 201/276 (72.83%), Query Frame = 1


Query: 5   LNLLSSSNFPLSLSLTHNLLLSPPPFSSLHRPITSPSVPPLRTHQCFCLPQFSELSDAAT 64
           L+L SS + P SLS    L  S P       P  +P  PP                   +
Sbjct: 27  LSLTSSFSKPTSLSTFSALPPSKPDIWLASEP--TPVTPP-------------------S 86

Query: 65  SFPDDDGPIELP----STIFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRVKELK 124
             P++DGPIELP     +IFATTDDPS IQVATSVLLTG+I VFLFR+LRRRAKR KELK
Sbjct: 87  PSPEEDGPIELPFPSSPSIFATTDDPSPIQVATSVLLTGSIGVFLFRALRRRAKRAKELK 146

Query: 125 FRSAGVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYKFTTTIEA 184
           FRS+G KK++KEEA++SLKA+ +  I ++  PSP+Q FLG ++A VIALILYKFTTTIEA
Sbjct: 147 FRSSGAKKTMKEEALDSLKAMGSASIDAQKPPSPLQTFLGGVSAAVIALILYKFTTTIEA 206

Query: 185 ALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNSVMEEGSE 244
           ALNRQTVSDNFSVRQ+TIT+RTI+NG+CYLATFVFG+N+VGLFLYSGQLA+NS M EGS 
Sbjct: 207 ALNRQTVSDNFSVRQITITVRTIINGLCYLATFVFGLNSVGLFLYSGQLAINSFM-EGST 266

Query: 245 DKELATKGDKQVSSPNSTVETTLDGTESSSSKDDQS 277
            +E  +KG++Q  S NS  E+ +D TES+SS+ DQ+
Sbjct: 267 SEESESKGNEQSGSLNSAPESPIDSTESNSSQGDQN 280

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BLAST of CmaCh04G005560 vs. TAIR10
Match: AT3G15110.1 (AT3G15110.1 unknown protein)

HSP 1 Score: 231.1 bits (588), Expect = 8.3e-61
Identity = 141/235 (60.00%), Postives = 172/235 (73.19%), Query Frame = 1


Query: 53  LPQFSELSDAATSFPDDDGPIELPST----------IFATTDDPSSIQVATSVLLTGAIS 112
           L    E++D A    ++DGPIELP++          IFAT+DDP+ +Q+ATSVLLTGAI+
Sbjct: 42  LSAVKEIADVAEV--EEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAIT 101

Query: 113 VFLFRSLRRRAKRVKELKFRSAGVKKSLKEEAMESLKAISTGPIQS-KSKPSPVQAFLGA 172
           VFL RS+RRRAKR KEL FRS G KKSLKEEAM++LKA+S+ PI+   S PS  QAFLGA
Sbjct: 102 VFLIRSVRRRAKRAKELTFRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGA 161

Query: 173 IAAGVIALILYKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVG 232
           IAAGVIALILYKFT T+E+ LNRQT+SDNFSVRQ+T+T+RTI+NGICYLATFVFG+NA G
Sbjct: 162 IAAGVIALILYKFTVTVESGLNRQTISDNFSVRQITVTVRTIINGICYLATFVFGLNAFG 221

Query: 233 LFLYSGQLALNSVMEEGSEDKELATKGDKQVSSPNSTVETTLDGTESSSSKDDQS 277
           L LYSGQLA N   E+ +E+   AT      SS         D +E + S +DQS
Sbjct: 222 LLLYSGQLAFN---EDSAEENMKATTQPGDSSSG--------DNSEVNKSNEDQS 263

[Close]

BLAST of CmaCh04G005560 vs. NCBI nr
Match: gi|778688583|ref|XP_011652784.1| (PREDICTED: uncharacterized protein LOC101221005 [Cucumis sativus])

HSP 1 Score: 395.2 bits (1014), Expect = 9.4e-107
Identity = 226/281 (80.43%), Postives = 245/281 (87.19%), Query Frame = 1


Query: 1   MLHTLNLLSSSNFPLSL----SLTHNLLLSPPP-FSSLHRPITSPSVPPLRTHQCFCLPQ 60
           M HT NLLSS NFPL      +  H L LSPP   SSLHRPIT  SV PL  H+CFCLPQ
Sbjct: 570 MWHTQNLLSS-NFPLFTLSPPTYNHKLFLSPPTTLSSLHRPITFHSVSPLTNHRCFCLPQ 629

Query: 61  FSELSDAATSFPDDDGPIELPSTIFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRAKR 120
           F++L+DA  +F DD+GP+ELP TIFATTDDPSS+QVATSVLLTGAISVFLFRSLRRRAKR
Sbjct: 630 FTDLADA--TFLDDNGPVELPPTIFATTDDPSSLQVATSVLLTGAISVFLFRSLRRRAKR 689

Query: 121 VKELKFRSAGVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYKFT 180
           VKELKFRS GVKKSLKEEAM+SLKAISTGPI+SKS PSP+QAFLGAIAAGVIALILYKFT
Sbjct: 690 VKELKFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFT 749

Query: 181 TTIEAALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNSVM 240
           TTIEA+LNRQTVSDNFSVRQLTITIRTIVNG+CYLATFVFGINA+GLFLYSGQLA+NSVM
Sbjct: 750 TTIEASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVM 809

Query: 241 EEGSEDKELATKGDKQVSSPNSTVETTLDGTESSSSKDDQS 277
           EEGS+D E   K D+QVS P ST ETTLD TESS+SKDDQS
Sbjct: 810 EEGSKDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQS 847

[Close]

BLAST of CmaCh04G005560 vs. NCBI nr
Match: gi|659112411|ref|XP_008456207.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496210 [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 2.7e-106
Identity = 226/281 (80.43%), Postives = 246/281 (87.54%), Query Frame = 1


Query: 1   MLHTLNLLSSSNFPLSL----SLTHNLLLSPPP-FSSLHRPITSPSVPPLRTHQCFCLPQ 60
           M HT NLLSS N PL      +  H L LSPP   SSLHRPIT  S+ PL TH+CFCLPQ
Sbjct: 458 MWHTQNLLSS-NLPLFTLSPPTYNHKLFLSPPTTLSSLHRPITFHSISPLTTHRCFCLPQ 517

Query: 61  FSELSDAATSFPDDDGPIELPSTIFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRAKR 120
           F++L+DA  +F DD+GP+ELP TIFATTD+PSS+QVATSVLLTGAISVFLFRSLRRRAKR
Sbjct: 518 FTDLADA--TFLDDNGPVELPPTIFATTDNPSSLQVATSVLLTGAISVFLFRSLRRRAKR 577

Query: 121 VKELKFRSAGVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYKFT 180
           VKELKFRSAGVKKSLKEEAM+SLKAISTGPI SKS PSP+QAFLGAIAAGVIALILYKFT
Sbjct: 578 VKELKFRSAGVKKSLKEEAMDSLKAISTGPIASKSTPSPIQAFLGAIAAGVIALILYKFT 637

Query: 181 TTIEAALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNSVM 240
           TTIEAALNRQTVSDNFSVRQLTITIRTIVNG+CYLATFVFGINA+GLFLYSGQLA+NSVM
Sbjct: 638 TTIEAALNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVM 697

Query: 241 EEGSEDKELATKGDKQVSSPNSTVETTLDGTESSSSKDDQS 277
           EEGS+DKE   K D+QVS P ST ETTL+ TESS+SKDDQS
Sbjct: 698 EEGSKDKEPKAKRDEQVSPPTSTAETTLNSTESSNSKDDQS 735

[Close]

BLAST of CmaCh04G005560 vs. NCBI nr
Match: gi|225461564|ref|XP_002282834.1| (PREDICTED: uncharacterized protein LOC100267434 [Vitis vinifera])

HSP 1 Score: 284.3 bits (726), Expect = 2.3e-73
Identity = 173/269 (64.31%), Postives = 213/269 (79.18%), Query Frame = 1


Query: 11  SNFPLSLSLTHNLLLSPPPFSSLHRPITSPSVPP-LRTHQCFCLPQFSELSDAATSFPDD 70
           S+F L LS +HN  LSPP F SL RP +   V   LRT      P  +++ D  T+ P++
Sbjct: 10  SSFSLPLSPSHNPCLSPP-FCSLSRPTSLHLVSAHLRTR---AEPLLAQVPDTTTTAPEE 69

Query: 71  DGPIELP---STIFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRVKELKFRSAGV 130
            GPIELP   S+IFAT DDP+ +QVATSVLLTGAISVFLFRS+RRR KR KEL+FRS+GV
Sbjct: 70  -GPIELPPSSSSIFATNDDPTPLQVATSVLLTGAISVFLFRSIRRRVKRAKELRFRSSGV 129

Query: 131 KKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYKFTTTIEAALNRQT 190
           KK+LKEEA++SLKA+ +G +++ + PSPVQA LG I AGVIALILYKFT TIEA+LNRQT
Sbjct: 130 KKTLKEEALDSLKAMGSGSVKA-APPSPVQALLGGITAGVIALILYKFTITIEASLNRQT 189

Query: 191 VSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNSVMEEGSEDKELAT 250
           VSDNFSVRQ+TITIRTI+NG+CYLATFVFGIN+VGLFLYSGQLALNS M EGS  +E   
Sbjct: 190 VSDNFSVRQITITIRTIINGLCYLATFVFGINSVGLFLYSGQLALNSFM-EGSTSEETQI 249

Query: 251 KGDKQVSSPNSTVETTLDGTESSSSKDDQ 276
           KG++Q+S+PN+  ++  DGT+ +SS+ DQ
Sbjct: 250 KGEEQLSTPNTLTDSPPDGTQLNSSEGDQ 271

[Close]

BLAST of CmaCh04G005560 vs. NCBI nr
Match: gi|658029128|ref|XP_008350007.1| (PREDICTED: uncharacterized protein LOC103413308 [Malus domestica])

HSP 1 Score: 283.5 bits (724), Expect = 4.0e-73
Identity = 179/290 (61.72%), Postives = 220/290 (75.86%), Query Frame = 1


Query: 1   MLHTLNLLSSSNFPLSLSLTHNLLLSPP-----PFSSLHRPITSPSVPPLRTHQCFCLPQ 60
           ML T +LL S NFP+ LS      LSPP     P + LH+P    S+ P+  H      Q
Sbjct: 1   MLQTQHLLLS-NFPIFLSHPQTNFLSPPNLSPFPLTFLHKPT---SLCPVSAHSRAGPEQ 60

Query: 61  F-SELSDAATSFP------DDDGPIELP---STIFATTDDPSSIQVATSVLLTGAISVFL 120
           + +E  +  T+ P        DGP ELP   S +FAT DDPSS+QVATSVLLTGAI+VFL
Sbjct: 61  WLAEAPEPTTATPYTPLEFAPDGPEELPPSSSPVFATNDDPSSLQVATSVLLTGAITVFL 120

Query: 121 FRSLRRRAKRVKELKFRSAGVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAG 180
           FRSLRRRAKR KELK+RS+GVKKSLK+EA++SLKA+STG +++K  PSPVQA LG I+AG
Sbjct: 121 FRSLRRRAKRAKELKYRSSGVKKSLKDEALDSLKALSTGSVEAKGPPSPVQALLGGISAG 180

Query: 181 VIALILYKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLY 240
           VIALILYKFTTTIEA+LNRQT+SDNFSVRQ+TITIRTI+NG+CYLATFVFGINAVGL LY
Sbjct: 181 VIALILYKFTTTIEASLNRQTISDNFSVRQITITIRTIINGLCYLATFVFGINAVGLVLY 240

Query: 241 SGQLALNSVMEEGSEDKELATKGDKQVSSPNSTVETTLDGTESSSSKDDQ 276
           +GQLA+NS+ME+ +ED +  T+G++Q  S NSTVE+  +  E +S+KDDQ
Sbjct: 241 AGQLAINSIMEDINEDTQ--TQGEEQSGSLNSTVESPTNSGE-NSNKDDQ 283

[Close]

BLAST of CmaCh04G005560 vs. NCBI nr
Match: gi|567919520|ref|XP_006451766.1| (hypothetical protein CICLE_v10009151mg [Citrus clementina])

HSP 1 Score: 282.7 bits (722), Expect = 6.8e-73
Identity = 174/279 (62.37%), Postives = 210/279 (75.27%), Query Frame = 1


Query: 1   MLHTLNLLSSSNFPLSLSLTHNLLLSPPPFSSLHRPITSPSVPPLRTH--QCFCLPQFSE 60
           ML T +LLS  NFP ++S  H+    P   + L +P  S S  P R    + +CL Q  E
Sbjct: 1   MLQTHHLLSL-NFPFTVS--HH----PQKLNFLQKPTISLSAFPRRRPLIEPYCLAQAQE 60

Query: 61  LSDAATS-FPDDDGPIELPSTIFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRVK 120
            +   T+    ++GP+ELP +IFATTD+PSS+QVATSVLLTGAISVFLFR+LRRRAKR K
Sbjct: 61  PTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVATSVLLTGAISVFLFRALRRRAKRAK 120

Query: 121 ELKFRSAGVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYKFTTT 180
           ELKFRS+G KKSLK+EA+++LKA+ +  I +K  PSPVQA LG + AGVIA+ILYKFTTT
Sbjct: 121 ELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTAGVIAIILYKFTTT 180

Query: 181 IEAALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNSVMEE 240
           IEAALNRQT+SDNFSVRQ+TITIRTIVNG+CYLATFVFGIN+VGLFLYSGQLALNS  E+
Sbjct: 181 IEAALNRQTISDNFSVRQITITIRTIVNGLCYLATFVFGINSVGLFLYSGQLALNSFTED 240

Query: 241 GSEDKELATKGDKQVSSPNSTVETTLDGTESSSSKDDQS 277
            S  KE    G++Q  S NST E   D TE +S K+DQS
Sbjct: 241 SSSSKETENIGEQQSGSLNSTAENATD-TELNSGKEDQS 271

The following BLAST results are available for this feature:

BLAST of CmaCh04G005560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G005560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067ETL5_CITSI	4.7e-73	62.37	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023825mg PE=4 SV=1	[more]
V4UR94_9ROSI	4.7e-73	62.37	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009151mg PE=4 SV=1	[more]
W9R7B4_9ROSA	6.4e-70	61.54	Uncharacterized protein OS=Morus notabilis GN=L484_012166 PE=4 SV=1	[more]
B9I1E4_POPTR	5.4e-69	60.21	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10000g PE=4 SV=2	[more]
B9SB97_RICCO	3.5e-68	59.42	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649730 PE=4 SV=1	[more]

BLAST of CmaCh04G005560 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15110.1	8.3e-61	60.00	unknown protein	[more]

BLAST of CmaCh04G005560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688583\|ref\|XP_011652784.1\|	9.4e-107	80.43	PREDICTED: uncharacterized protein LOC101221005 [Cucumis sativus]	[more]
gi\|659112411\|ref\|XP_008456207.1\|	2.7e-106	80.43	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496210 [Cucumis me...	[more]
gi\|225461564\|ref\|XP_002282834.1\|	2.3e-73	64.31	PREDICTED: uncharacterized protein LOC100267434 [Vitis vinifera]	[more]
gi\|658029128\|ref\|XP_008350007.1\|	4.0e-73	61.72	PREDICTED: uncharacterized protein LOC103413308 [Malus domestica]	[more]
gi\|567919520\|ref\|XP_006451766.1\|	6.8e-73	62.37	hypothetical protein CICLE_v10009151mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021434	DUF3082

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G005560.1	CmaCh04G005560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021434	Protein of unknown function DUF3082	PFAM	PF11282	DUF3082	coord: 152..229 score: 6.8
None	No IPR available	PANTHER	PTHR35733	FAMILY NOT NAMED	coord: 1..276 score: 2.8E
None	No IPR available	PANTHER	PTHR35733:SF1	SUBFAMILY NOT NAMED	coord: 1..276 score: 2.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G005560	Cucsa.032450	Cucumber (Gy14) v1	cgycmaB0012
CmaCh04G005560	Cla004286	Watermelon (97103) v1	cmawmB703
CmaCh04G005560	Csa3G236050	Cucumber (Chinese Long) v2	cmacuB697
CmaCh04G005560	MELO3C019395	Melon (DHL92) v3.5.1	cmameB691
CmaCh04G005560	ClCG05G009210	Watermelon (Charleston Gray)	cmawcgB659
CmaCh04G005560	CSPI03G19510	Wild cucumber (PI 183967)	cmacpiB705
CmaCh04G005560	CmoCh04G005900	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G005560	Lsi05G001320	Bottle gourd (USVL1VR-Ls)	cmalsiB690
CmaCh04G005560	Cp4.1LG01g01740	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G005560	CsaV3_3G019570	Cucumber (Chinese Long) v3	cmacucB0829
CmaCh04G005560	Cla97C05G091530	Watermelon (97103) v2	cmawmbB763
CmaCh04G005560	Bhi01G001148	Wax gourd	cmawgoB0852
CmaCh04G005560	CsGy3G019430	Cucumber (Gy14) v2	cgybcmaB410
CmaCh04G005560	Carg13181	Silver-seed gourd	carcmaB0055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G005560	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G005560	Cucumber (Chinese Long) v2	cmacuB722
CmaCh04G005560	Cucurbita pepo (Zucchini)	cmacpeB715
CmaCh04G005560	Melon (DHL92) v3.6.1	cmamedB777
CmaCh04G005560	Silver-seed gourd	carcmaB0925
CmaCh04G005560	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh04G005560	Cucumber (Gy14) v1	cgycmaB0324