Csa3G197920 (gene) Cucumber (Chinese Long) v2

NameCsa3G197920
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionAutophagy protein 5; contains IPR007239 (Autophagy-related protein 5)
LocationChr3 : 13509230 .. 13509787 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTAATTCTCTGCTTTTCCCCTTCTGCTGCACTTTCCCTTTTCGAACTATCTGATTTTAGGCTCTCAATTTCATCAACCGATGAACATCATGGGTTCATTCTTTTCATTTCTCTGAGAAATTTGAGTTTGTTTACAAGGGCTGCTAGTATTTGCTGCTTCTTGTGTTTTCAATTTGGTGTTTTGAATGACGGATGCTTTTTATGTGTCTACTGAACGCCCAAGTAGAACTTTTGATTGAGCTTAATCGAATTGAATTGCTTTTTATGTGGGATTTTGTTTTTTGAGCTCCTTTAGGTCTTAGCTCCTCGGATTGGCTACCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATGGTACGCTCTTCTTTGCTGCTTTAAATTTCATCTTTGCTAA

mRNA sequence

ATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTCTTAGCTCCTCGGATTGGCTACCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATGGTACGCTCTTCTTTGCTGCTTTAAATTTCATCTTTGCTAA

Coding sequence (CDS)

ATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTCTTAGCTCCTCGGATTGGCTACCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATGGTACGCTCTTCTTTGCTGCTTTAAATTTCATCTTTGCTAA

Protein sequence

MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGVDTIWFEYQGLPLKWYALLCCFKFHLC*
BLAST of Csa3G197920 vs. Swiss-Prot
Match: ATG5_ARATH (Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 9.5e-29
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1

Query: 2  DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          +A+KY+WEGAIPLQIHLH+S+V + P PPPA+VLAPRIGYLPLL   IKPYF  +LPPG 
Sbjct: 4  EAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLPPGE 63

Query: 62 DTIWFEYQGLPLKWY 77
          D+IWF+Y+G PLKWY
Sbjct: 64 DSIWFDYKGFPLKWY 78

BLAST of Csa3G197920 vs. Swiss-Prot
Match: ATG5_ORYSI (Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-28
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1

Query: 2  DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          +A + +W GA+PLQ+HLH+++VTT+PPPPP + L PRIGYLPLL   IK +F STLPPG+
Sbjct: 14 EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPPGI 73

Query: 62 DTIWFEYQGLPLKWY 77
          DT+WFEY+GLPLKWY
Sbjct: 74 DTVWFEYKGLPLKWY 88

BLAST of Csa3G197920 vs. Swiss-Prot
Match: ATG5_ORYSJ (Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-28
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1

Query: 2  DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          +A + +W GA+PLQ+HLH+++VTT+PPPPP + L PRIGYLPLL   IK +F STLPPG+
Sbjct: 14 EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPPGI 73

Query: 62 DTIWFEYQGLPLKWY 77
          DT+WFEY+GLPLKWY
Sbjct: 74 DTVWFEYKGLPLKWY 88

BLAST of Csa3G197920 vs. Swiss-Prot
Match: ATG5_DICDI (Autophagy protein 5 OS=Dictyostelium discoideum GN=atg5 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.1e-12
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1

Query: 2  DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          D  + IWEG IP+   L   ++T+   P P  ++APR  Y PL+ S +K YF S+    +
Sbjct: 7  DIKRSIWEGKIPIVFTLSPDDLTSHLSPSPYTLMAPRNSYFPLITSLVKDYFSSSTLVLL 66

Query: 62 DTIWFEYQGLPLKWY 77
          D +W EY+G+PLKW+
Sbjct: 67 DEMWLEYRGIPLKWH 81

BLAST of Csa3G197920 vs. Swiss-Prot
Match: ATG5_EMENI (Autophagy protein 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg5 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-09
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 1

Query: 5  KYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGVDTI 64
          K +WEG IPL+I L  SE  T     P ++  PRI YLP L  ++K +F S+L     + 
Sbjct: 11 KSVWEGQIPLKIVLAPSESRTYDQTDPYLISYPRISYLPSLLPRLKAFFSSSLIDPTASQ 70

Query: 65 ----WFEYQGLPLKWY 77
              WF ++G+PLKW+
Sbjct: 71 PHDGWFSFEGVPLKWH 86

BLAST of Csa3G197920 vs. TrEMBL
Match: A0A0A0LA41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G197920 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.7e-46
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKWYALLCCFKFHLC 88
          VDTIWFEYQGLPLKWYALLCCFKFHLC
Sbjct: 61 VDTIWFEYQGLPLKWYALLCCFKFHLC 87

BLAST of Csa3G197920 vs. TrEMBL
Match: V4U4U7_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-33
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 61 VDTIWFEYQGLPLKWY 77
          VDTIWFEY+GLPLKWY
Sbjct: 63 VDTIWFEYKGLPLKWY 78

BLAST of Csa3G197920 vs. TrEMBL
Match: V4RJI1_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-33
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 61 VDTIWFEYQGLPLKWY 77
          VDTIWFEY+GLPLKWY
Sbjct: 63 VDTIWFEYKGLPLKWY 78

BLAST of Csa3G197920 vs. TrEMBL
Match: V4S1S6_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-33
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 61 VDTIWFEYQGLPLKWY 77
          VDTIWFEY+GLPLKWY
Sbjct: 63 VDTIWFEYKGLPLKWY 78

BLAST of Csa3G197920 vs. TrEMBL
Match: A0A067E9E3_CITSI (Autophagy protein 5 (Fragment) OS=Citrus sinensis GN=CISIN_1g035508mg PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-33
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1

Query: 1   MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
           M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 49  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 108

Query: 61  VDTIWFEYQGLPLKWY 77
           VDTIWFEY+GLPLKWY
Sbjct: 109 VDTIWFEYKGLPLKWY 124

BLAST of Csa3G197920 vs. TAIR10
Match: AT5G17290.1 (AT5G17290.1 autophagy protein Apg5 family)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-30
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1

Query: 2  DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          +A+KY+WEGAIPLQIHLH+S+V + P PPPA+VLAPRIGYLPLL   IKPYF  +LPPG 
Sbjct: 4  EAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLPPGE 63

Query: 62 DTIWFEYQGLPLKWY 77
          D+IWF+Y+G PLKWY
Sbjct: 64 DSIWFDYKGFPLKWY 78

BLAST of Csa3G197920 vs. NCBI nr
Match: gi|700202344|gb|KGN57477.1| (hypothetical protein Csa_3G197920 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 3.8e-46
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKWYALLCCFKFHLC 88
          VDTIWFEYQGLPLKWYALLCCFKFHLC
Sbjct: 61 VDTIWFEYQGLPLKWYALLCCFKFHLC 87

BLAST of Csa3G197920 vs. NCBI nr
Match: gi|449446111|ref|XP_004140815.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKW 76
          VDTIWFEYQGLPLKW
Sbjct: 61 VDTIWFEYQGLPLKW 75

BLAST of Csa3G197920 vs. NCBI nr
Match: gi|778679952|ref|XP_011651221.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKW 76
          VDTIWFEYQGLPLKW
Sbjct: 61 VDTIWFEYQGLPLKW 75

BLAST of Csa3G197920 vs. NCBI nr
Match: gi|659112386|ref|XP_008456193.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKW 76
          VDTIWFEYQGLPLKW
Sbjct: 61 VDTIWFEYQGLPLKW 75

BLAST of Csa3G197920 vs. NCBI nr
Match: gi|659112388|ref|XP_008456194.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKW 76
          VDTIWFEYQGLPLKW
Sbjct: 61 VDTIWFEYQGLPLKW 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATG5_ARATH9.5e-2972.00Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1[more]
ATG5_ORYSI4.7e-2866.67Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2[more]
ATG5_ORYSJ4.7e-2866.67Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1[more]
ATG5_DICDI8.1e-1241.33Autophagy protein 5 OS=Dictyostelium discoideum GN=atg5 PE=3 SV=1[more]
ATG5_EMENI3.8e-0940.79Autophagy protein 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 11... [more]
Match NameE-valueIdentityDescription
A0A0A0LA41_CUCSA2.7e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G197920 PE=4 SV=1[more]
V4U4U7_9ROSI1.2e-3385.53Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
V4RJI1_9ROSI1.2e-3385.53Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
V4S1S6_9ROSI1.2e-3385.53Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
A0A067E9E3_CITSI1.2e-3385.53Autophagy protein 5 (Fragment) OS=Citrus sinensis GN=CISIN_1g035508mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G17290.15.4e-3072.00 autophagy protein Apg5 family[more]
Match NameE-valueIdentityDescription
gi|700202344|gb|KGN57477.1|3.8e-46100.00hypothetical protein Csa_3G197920 [Cucumis sativus][more]
gi|449446111|ref|XP_004140815.1|1.9e-37100.00PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus][more]
gi|778679952|ref|XP_011651221.1|1.9e-37100.00PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus][more]
gi|659112386|ref|XP_008456193.1|1.9e-37100.00PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo][more]
gi|659112388|ref|XP_008456194.1|1.9e-37100.00PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007239Atg5
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
biological_process GO:0010150 leaf senescence
biological_process GO:0042594 response to starvation
biological_process GO:0006810 transport
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G197920.1Csa3G197920.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007239Autophagy-related protein 5PANTHERPTHR13040AUTOPHAGY PROTEIN 5coord: 1..76
score: 3.3
NoneNo IPR availablePANTHERPTHR13040:SF2AUTOPHAGY PROTEIN 5coord: 1..76
score: 3.3