Cucsa.108720 (gene) Cucumber (Gy14) v1

NameCucsa.108720
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionAutophagy protein 5
Locationscaffold00931 : 991631 .. 992320 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGATACGTGTTTCAATAAAAGAAATTTAAAAGTCAATAGAAAAAAaTGGTAAGAGGAACAAAATCGAGGCAAAAAGAAGAAAAAaGAAAAGAGAAAGGAAAACGTGACTGACGAACAGAACAAGAGGAGAAGAAGAAGAAGAAGAGAGATAGAGGGAGTGGGGGCATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTAATTCTCTGCTTTTCCCCTTCTGCTGCACTTTCCCTTTTCGAACTATCTGATTTTAGGCTCTCAATTTCATCAACCGATGAACATCATGGGTTCATTCTTTTCATTTCTCTGAGAAATTTGAGTTTGTTTACAAGGGCTGCTAGTATTTGCTGCTTCTTGTGTTTTCAATTTGGTGTTTTGAATGACGGATGCTTTTTATGTGTCTACTGAACGCCCAAGTAGAACTTTTGATTGAGCTTAATCGAATTGAATTGCTTTTTATGTGGGATTTTGTTTTTTGAGCTCCTTTAGGTCTTAGCTCCTCGGATTGGCTACCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATG

mRNA sequence

ATGGAGGAGATACGTagagatagagggagTGGGGGCATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTCTTAGCTCCTCGGATTGGCTACCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATG

Coding sequence (CDS)

ATGGAGGAGATACGTAGAGATAGAGGGAGTGGGGGCATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTCTTAGCTCCTCGGATTGGCTACCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATG

Protein sequence

MEEIRRDRGSGGMDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGVDTIWFEYQGLPLKX
BLAST of Cucsa.108720 vs. Swiss-Prot
Match: ATG5_ORYSJ (Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-26
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1

Query: 5  RRDRGSGGMDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPY 64
          R D      +A + +W GA+PLQ+HLH+++VTT+PPPPP + L PRIGYLPLL   IK +
Sbjct: 5  RDDEAGWSAEAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAH 64

Query: 65 FGSTLPPGVDTIWFEYQGLPLK 87
          F STLPPG+DT+WFEY+GLPLK
Sbjct: 65 FSSTLPPGIDTVWFEYKGLPLK 86

BLAST of Cucsa.108720 vs. Swiss-Prot
Match: ATG5_ORYSI (Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-26
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1

Query: 5  RRDRGSGGMDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPY 64
          R D      +A + +W GA+PLQ+HLH+++VTT+PPPPP + L PRIGYLPLL   IK +
Sbjct: 5  RDDEAGWSAEAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAH 64

Query: 65 FGSTLPPGVDTIWFEYQGLPLK 87
          F STLPPG+DT+WFEY+GLPLK
Sbjct: 65 FSSTLPPGIDTVWFEYKGLPLK 86

BLAST of Cucsa.108720 vs. Swiss-Prot
Match: ATG5_ARATH (Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-26
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 1

Query: 14 DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 73
          +A+KY+WEGAIPLQIHLH+S+V + P PPPA+VLAPRIGYLPLL   IKPYF  +LPPG 
Sbjct: 4  EAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLPPGE 63

Query: 74 DTIWFEYQGLPLK 87
          D+IWF+Y+G PLK
Sbjct: 64 DSIWFDYKGFPLK 76

BLAST of Cucsa.108720 vs. Swiss-Prot
Match: ATG5_DICDI (Autophagy protein 5 OS=Dictyostelium discoideum GN=atg5 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-10
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 1

Query: 14 DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 73
          D  + IWEG IP+   L   ++T+   P P  ++APR  Y PL+ S +K YF S+    +
Sbjct: 7  DIKRSIWEGKIPIVFTLSPDDLTSHLSPSPYTLMAPRNSYFPLITSLVKDYFSSSTLVLL 66

Query: 74 DTIWFEYQGLPLK 87
          D +W EY+G+PLK
Sbjct: 67 DEMWLEYRGIPLK 79

BLAST of Cucsa.108720 vs. Swiss-Prot
Match: ATG5_EMENI (Autophagy protein 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg5 PE=3 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1

Query: 17 KYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGVDTI 76
          K +WEG IPL+I L  SE  T     P ++  PRI YLP L  ++K +F S+L     + 
Sbjct: 11 KSVWEGQIPLKIVLAPSESRTYDQTDPYLISYPRISYLPSLLPRLKAFFSSSLIDPTASQ 70

Query: 77 ----WFEYQGLPLK 87
              WF ++G+PLK
Sbjct: 71 PHDGWFSFEGVPLK 84

BLAST of Cucsa.108720 vs. TrEMBL
Match: A0A0A0LA41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G197920 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.5e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 13 MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 72
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 73 VDTIWFEYQGLPLK 87
          VDTIWFEYQGLPLK
Sbjct: 61 VDTIWFEYQGLPLK 74

BLAST of Cucsa.108720 vs. TrEMBL
Match: A0A067E9E3_CITSI (Autophagy protein 5 (Fragment) OS=Citrus sinensis GN=CISIN_1g035508mg PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-31
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1

Query: 13  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 72
           M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 49  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 108

Query: 73  VDTIWFEYQGLPLK 87
           VDTIWFEY+GLPLK
Sbjct: 109 VDTIWFEYKGLPLK 122

BLAST of Cucsa.108720 vs. TrEMBL
Match: V4U4U7_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-31
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1

Query: 13 MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 72
          M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 73 VDTIWFEYQGLPLK 87
          VDTIWFEY+GLPLK
Sbjct: 63 VDTIWFEYKGLPLK 76

BLAST of Cucsa.108720 vs. TrEMBL
Match: V4S1S6_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-31
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1

Query: 13 MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 72
          M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 73 VDTIWFEYQGLPLK 87
          VDTIWFEY+GLPLK
Sbjct: 63 VDTIWFEYKGLPLK 76

BLAST of Cucsa.108720 vs. TrEMBL
Match: V4RJI1_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-31
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1

Query: 13 MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 72
          M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 73 VDTIWFEYQGLPLK 87
          VDTIWFEY+GLPLK
Sbjct: 63 VDTIWFEYKGLPLK 76

BLAST of Cucsa.108720 vs. TAIR10
Match: AT5G17290.1 (AT5G17290.1 autophagy protein Apg5 family)

HSP 1 Score: 120.2 bits (300), Expect = 6.5e-28
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 1

Query: 14 DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 73
          +A+KY+WEGAIPLQIHLH+S+V + P PPPA+VLAPRIGYLPLL   IKPYF  +LPPG 
Sbjct: 4  EAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLPPGE 63

Query: 74 DTIWFEYQGLPLK 87
          D+IWF+Y+G PLK
Sbjct: 64 DSIWFDYKGFPLK 76

BLAST of Cucsa.108720 vs. NCBI nr
Match: gi|449446111|ref|XP_004140815.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 13 MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 72
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 73 VDTIWFEYQGLPLK 87
          VDTIWFEYQGLPLK
Sbjct: 61 VDTIWFEYQGLPLK 74

BLAST of Cucsa.108720 vs. NCBI nr
Match: gi|778679952|ref|XP_011651221.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 13 MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 72
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 73 VDTIWFEYQGLPLK 87
          VDTIWFEYQGLPLK
Sbjct: 61 VDTIWFEYQGLPLK 74

BLAST of Cucsa.108720 vs. NCBI nr
Match: gi|700202344|gb|KGN57477.1| (hypothetical protein Csa_3G197920 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 13 MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 72
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 73 VDTIWFEYQGLPLK 87
          VDTIWFEYQGLPLK
Sbjct: 61 VDTIWFEYQGLPLK 74

BLAST of Cucsa.108720 vs. NCBI nr
Match: gi|659112388|ref|XP_008456194.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 13 MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 72
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 73 VDTIWFEYQGLPLK 87
          VDTIWFEYQGLPLK
Sbjct: 61 VDTIWFEYQGLPLK 74

BLAST of Cucsa.108720 vs. NCBI nr
Match: gi|659112386|ref|XP_008456193.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query: 13 MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 72
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 73 VDTIWFEYQGLPLK 87
          VDTIWFEYQGLPLK
Sbjct: 61 VDTIWFEYQGLPLK 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATG5_ORYSJ1.1e-2660.98Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1[more]
ATG5_ORYSI1.1e-2660.98Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2[more]
ATG5_ARATH1.1e-2671.23Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1[more]
ATG5_DICDI2.6e-1041.10Autophagy protein 5 OS=Dictyostelium discoideum GN=atg5 PE=3 SV=1[more]
ATG5_EMENI1.2e-0740.54Autophagy protein 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 11... [more]
Match NameE-valueIdentityDescription
A0A0A0LA41_CUCSA2.5e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G197920 PE=4 SV=1[more]
A0A067E9E3_CITSI1.4e-3185.14Autophagy protein 5 (Fragment) OS=Citrus sinensis GN=CISIN_1g035508mg PE=3 SV=1[more]
V4U4U7_9ROSI1.4e-3185.14Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
V4S1S6_9ROSI1.4e-3185.14Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
V4RJI1_9ROSI1.4e-3185.14Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G17290.16.5e-2871.23 autophagy protein Apg5 family[more]
Match NameE-valueIdentityDescription
gi|449446111|ref|XP_004140815.1|3.6e-36100.00PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus][more]
gi|778679952|ref|XP_011651221.1|3.6e-36100.00PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus][more]
gi|700202344|gb|KGN57477.1|3.6e-36100.00hypothetical protein Csa_3G197920 [Cucumis sativus][more]
gi|659112388|ref|XP_008456194.1|3.6e-36100.00PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo][more]
gi|659112386|ref|XP_008456193.1|3.6e-36100.00PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007239Atg5
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
biological_process GO:0006810 transport
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.108720.1Cucsa.108720.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007239Autophagy-related protein 5PANTHERPTHR13040AUTOPHAGY PROTEIN 5coord: 9..86
score: 9.0