Lsi05G002600 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G002600
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAutophagy protein 5
Locationchr05 : 3304010 .. 3305897 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAATGGTAAAGAAACAAAATCGAAGCAAAAAAAAAAAAAGGAAAAAGAAAGAAAAAAACTGACGAGCAGAACAGAGTGAGAGAAGAAGAAGAAGAAGAAGAAGAGAGATAGAGGGCGTGGGGGGATGGAAGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCGCCTGCAATGGTAATTCTCTGTTTTCCCCCTTCGCTGCAATTTCACTTTTTCAACTATCTAATTTGTGACTCTCAATTTGATCAACGGATGAACATCATGGGTTCAATCGGTTTATTTATCTCTTTTCCTCTCAGAAATTTGAGTTTGGTTACAAGGGTTGTTTGTATTTGCTGCTTCTTGTGTTTTCAATTTGGTGTTTTGAATAAGGAATGATTTTTTGGTGTCTACTGTACGCCCTAGTTGAACTTTGATTGAACTTAATCGAATTGAATTTCTTTCCATGTGGGATTTTGTATTTTGATCTACTTTTAGGTCTTAGCTCCTCGGATTGGCTACCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGTACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACAAGGGTTTGCCCCTTAAATGGTACGCTCTTCTTTTCTCTTTTAAATTTCATCTTTGTTAAAAGTTTCTTTGAATTTTGTAGATCAGTTTGAATTTTCTTTAAAAATCTGCCAATCGTATATCGAGGTTGATCCTCGTACTATTCTCTGTTTTTGTAACTACTTACTATACACTGCTCTTCTTCGTCAACTAATTATTCTTGCTACTTTTTTTGCTTTTGATCCAACTCTTTCTCTCTCTCATTGCGTATGTCTCACAAGGTACACTGTGCACCATCTCACAATGTACACTCTGGAGAAGAAGCTGAAAATTGAAACATGTTAAATTAAAATTATTGTTATCAGTTTTTAGTAGGAAGGACTTCAGTTAATATAGAAACTGGAAAAAAGAAAATAAGATAAGATATTCATCTCAACCTAGTCGAGTGTGATTATGGACTCTCATCATTTAGAAGGGAAGAAGATGGTAGACACTCATGATAATAGGGAAACAAATATCATAGGTAAAGTAAAATAAATGAGAGGACAGGTGAGCCTTCACCAATGCTAATGGGAGTTACAAAAAGGCCTGTTAGCATATATATCTGTTAAAGAATGATTACGAAAGGCTTTGTTAAGTCTACACCTTGAATTTGCTGTCTAAAGGATGCAATCCCCAAGAAAGGGGGAAGTTTTCTCCAAACACTAGAAACACATGATGATTCCTTTTTAACCAAAGATTCCATAAGAAACTTGTGGTTAAGCTAATCCATACAAAATTAGCCTTTTCCTTGGAGTGGTGGTTTTGCAAGAGGGAGCGAAGATTAACATGAGCAGAACTCAACTGGTTAAGGCATATGCCCTTGATCAAGGGTCGGAGGTTTGAATTCCCCCACACCCACGTGCTGTTGAACTAAAAAAGAGGGAGTGAAAGTTGGAAATAATGTCTTTATCACGTGGATGGGCCTAGCAAAAATAGGTTGTAACAGGATTCCACATGGTGGAGACAAACTGGCAATGAACAAAAATGTGATATTGTTGTTTTGAGCTCCTCTTGCAAAGAACAAACCAGTAAGGGTAGAGACCTGGATGCAGATTCCTCTTCTGAATTTTTTCATCGGTGTTGGTGGTGTTTAGACAATAGAGATTTCCTACATGAAAATCTCCAAATTGCCTTGCAAAAATCAGAATTGAATAAGTTCCTATTGATGTTTAGGTCTTTGGGAAGAGACTTGCACGTTGAATATTCTGAAAGATCAAAAGTCCAAGATGATTAA

mRNA sequence

AAAAAATGGTAAAGAAACAAAATCGAAGCAAAAAAAAAAAAAGGAAAAAGAAAGAAAAAAACTGACGAGCAGAACAGAGTGAGAGAAGAAGAAGAAGAAGAAGAAGAGAGATAGAGGGCGTGGGGGGATGGAAGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCGCCTGCAATGGTCTTAGCTCCTCGGATTGGCTACCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGTACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACAAGGGTTTGCCCCTTAAATGGTCTTTGGGAAGAGACTTGCACGTTGAATATTCTGAAAGATCAAAAGTCCAAGATGATTAA

Coding sequence (CDS)

ATGGAAGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCGCCTGCAATGGTCTTAGCTCCTCGGATTGGCTACCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGTACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACAAGGGTTTGCCCCTTAAATGGTCTTTGGGAAGAGACTTGCACGTTGAATATTCTGAAAGATCAAAAGTCCAAGATGATTAA

Protein sequence

MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGVDTIWFEYKGLPLKWSLGRDLHVEYSERSKVQDD
Homology
[Close]
BLAST of Lsi05G002600 vs. Swiss-Prot
Match: ATG5_ARATH (Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-28
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1 

Query: 2  EALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          EA+KY+WEGAIPLQIHLH+S+V + P PPPA+VLAPRIGYLPLL   IKPYF  +LPPG 
Sbjct: 4  EAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLPPGE 63

Query: 62 DTIWFEYKGLPLKW 76
          D+IWF+YKG PLKW
Sbjct: 64 DSIWFDYKGFPLKW 77

[Close]
BLAST of Lsi05G002600 vs. Swiss-Prot
Match: ATG5_ORYSJ (Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.0e-28
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 1 

Query: 2  EALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          EA + +W GA+PLQ+HLH+++VTT+PPPPP + L PRIGYLPLL   IK +F STLPPG+
Sbjct: 14 EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPPGI 73

Query: 62 DTIWFEYKGLPLKW 76
          DT+WFEYKGLPLKW
Sbjct: 74 DTVWFEYKGLPLKW 87

[Close]
BLAST of Lsi05G002600 vs. Swiss-Prot
Match: ATG5_ORYSI (Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 5.0e-28
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 1 

Query: 2  EALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          EA + +W GA+PLQ+HLH+++VTT+PPPPP + L PRIGYLPLL   IK +F STLPPG+
Sbjct: 14 EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPPGI 73

Query: 62 DTIWFEYKGLPLKW 76
          DT+WFEYKGLPLKW
Sbjct: 74 DTVWFEYKGLPLKW 87

[Close]
BLAST of Lsi05G002600 vs. Swiss-Prot
Match: ATG5_DICDI (Autophagy protein 5 OS=Dictyostelium discoideum GN=atg5 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-11
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 7  IWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGVDTIWF 66
          IWEG IP+   L   ++T+   P P  ++APR  Y PL+ S +K YF S+    +D +W 
Sbjct: 12 IWEGKIPIVFTLSPDDLTSHLSPSPYTLMAPRNSYFPLITSLVKDYFSSSTLVLLDEMWL 71

Query: 67 EYKGLPLKWSL 78
          EY+G+PLKW L
Sbjct: 72 EYRGIPLKWHL 82

[Close]
BLAST of Lsi05G002600 vs. Swiss-Prot
Match: ATG5_ASPCL (Autophagy protein 5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=atg5 PE=3 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-09
Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 1 

Query: 5  KYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTL---PPGV 64
          K +W+G +PLQI L  SE  T     P ++  PRI YLP L  +++ +F S+L       
Sbjct: 12 KTVWDGKLPLQITLASSESRTFDQTDPYLISCPRISYLPSLLPRLRSFFASSLIEPKSQP 71

Query: 65 DTIWFEYKGLPLKWSL 78
             WF ++G+PLKW L
Sbjct: 72 HEGWFSFEGVPLKWHL 87

[Close]
BLAST of Lsi05G002600 vs. TrEMBL
Match: A0A0A0LA41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G197920 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-36
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+ALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYKGLPLKW 76
          VDTIWFEY+GLPLKW
Sbjct: 61 VDTIWFEYQGLPLKW 75

[Close]
BLAST of Lsi05G002600 vs. TrEMBL
Match: V4S1S6_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-33
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1 

Query: 1  MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MEA KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 61 VDTIWFEYKGLPLKW 76
          VDTIWFEYKGLPLKW
Sbjct: 63 VDTIWFEYKGLPLKW 77

[Close]
BLAST of Lsi05G002600 vs. TrEMBL
Match: A0A067E9E3_CITSI (Autophagy protein 5 (Fragment) OS=Citrus sinensis GN=CISIN_1g035508mg PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-33
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1 

Query: 1   MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
           MEA KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 49  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 108

Query: 61  VDTIWFEYKGLPLKW 76
           VDTIWFEYKGLPLKW
Sbjct: 109 VDTIWFEYKGLPLKW 123

[Close]
BLAST of Lsi05G002600 vs. TrEMBL
Match: V4RJI1_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-33
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1 

Query: 1  MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MEA KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 61 VDTIWFEYKGLPLKW 76
          VDTIWFEYKGLPLKW
Sbjct: 63 VDTIWFEYKGLPLKW 77

[Close]
BLAST of Lsi05G002600 vs. TrEMBL
Match: V4U4U7_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-33
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1 

Query: 1  MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MEA KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 61 VDTIWFEYKGLPLKW 76
          VDTIWFEYKGLPLKW
Sbjct: 63 VDTIWFEYKGLPLKW 77

[Close]
BLAST of Lsi05G002600 vs. TAIR10
Match: AT5G17290.1 (AT5G17290.1 autophagy protein Apg5 family)

HSP 1 Score: 127.1 bits (318), Expect = 5.7e-30
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1 

Query: 2  EALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          EA+KY+WEGAIPLQIHLH+S+V + P PPPA+VLAPRIGYLPLL   IKPYF  +LPPG 
Sbjct: 4  EAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLPPGE 63

Query: 62 DTIWFEYKGLPLKW 76
          D+IWF+YKG PLKW
Sbjct: 64 DSIWFDYKGFPLKW 77

[Close]
BLAST of Lsi05G002600 vs. NCBI nr
Match: gi|449446111|ref|XP_004140815.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 7.8e-37
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+ALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYKGLPLKWSL 78
          VDTIWFEY+GLPLKW++
Sbjct: 61 VDTIWFEYQGLPLKWNI 77

[Close]
BLAST of Lsi05G002600 vs. NCBI nr
Match: gi|778679952|ref|XP_011651221.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 7.8e-37
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+ALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYKGLPLKWSL 78
          VDTIWFEY+GLPLKW++
Sbjct: 61 VDTIWFEYQGLPLKWNI 77

[Close]
BLAST of Lsi05G002600 vs. NCBI nr
Match: gi|659112388|ref|XP_008456194.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 7.8e-37
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+ALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYKGLPLKWSL 78
          VDTIWFEY+GLPLKW++
Sbjct: 61 VDTIWFEYQGLPLKWNI 77

[Close]
BLAST of Lsi05G002600 vs. NCBI nr
Match: gi|659112386|ref|XP_008456193.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 7.8e-37
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+ALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYKGLPLKWSL 78
          VDTIWFEY+GLPLKW++
Sbjct: 61 VDTIWFEYQGLPLKWNI 77

[Close]
BLAST of Lsi05G002600 vs. NCBI nr
Match: gi|700202344|gb|KGN57477.1| (hypothetical protein Csa_3G197920 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-36
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MEALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+ALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYKGLPLKW 76
          VDTIWFEY+GLPLKW
Sbjct: 61 VDTIWFEYQGLPLKW 75

The following BLAST results are available for this feature:
BLAST of Lsi05G002600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATG5_ARATH1.0e-2874.32Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1[more]
ATG5_ORYSJ5.0e-2868.92Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1[more]
ATG5_ORYSI5.0e-2868.92Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2[more]
ATG5_DICDI1.1e-1143.66Autophagy protein 5 OS=Dictyostelium discoideum GN=atg5 PE=3 SV=1[more]
ATG5_ASPCL5.2e-0939.47Autophagy protein 5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM... [more]
BLAST of Lsi05G002600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA41_CUCSA1.2e-3697.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G197920 PE=4 SV=1[more]
V4S1S6_9ROSI1.2e-3388.00Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
A0A067E9E3_CITSI1.2e-3388.00Autophagy protein 5 (Fragment) OS=Citrus sinensis GN=CISIN_1g035508mg PE=3 SV=1[more]
V4RJI1_9ROSI1.2e-3388.00Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
V4U4U7_9ROSI1.2e-3388.00Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
BLAST of Lsi05G002600 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17290.15.7e-3074.32 autophagy protein Apg5 family[more]
BLAST of Lsi05G002600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446111|ref|XP_004140815.1|7.8e-3794.81PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus][more]
gi|778679952|ref|XP_011651221.1|7.8e-3794.81PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus][more]
gi|659112388|ref|XP_008456194.1|7.8e-3794.81PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo][more]
gi|659112386|ref|XP_008456193.1|7.8e-3794.81PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo][more]
gi|700202344|gb|KGN57477.1|1.7e-3697.33hypothetical protein Csa_3G197920 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR007239Atg5
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
biological_process GO:0006810 transport
biological_process GO:0010150 leaf senescence
biological_process GO:0042594 response to starvation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G002600.1Lsi05G002600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007239Autophagy-related protein 5PANTHERPTHR13040AUTOPHAGY PROTEIN 5coord: 1..75
score: 7.0
NoneNo IPR availablePANTHERPTHR13040:SF2AUTOPHAGY PROTEIN 5coord: 1..75
score: 7.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G002600Csa3G197920Cucumber (Chinese Long) v2culsiB211
Lsi05G002600CSPI03G17930Wild cucumber (PI 183967)cpilsiB209
Lsi05G002600Cucsa.108720Cucumber (Gy14) v1cgylsiB144
Lsi05G002600Cla013119Watermelon (97103) v1lsiwmB361
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G002600Silver-seed gourdcarlsiB158
Lsi05G002600Silver-seed gourdcarlsiB700
Lsi05G002600Cucumber (Chinese Long) v3cuclsiB230
Lsi05G002600Watermelon (97103) v2lsiwmbB329
Lsi05G002600Wax gourdlsiwgoB431
Lsi05G002600Cucurbita maxima (Rimu)cmalsiB249
Lsi05G002600Cucurbita maxima (Rimu)cmalsiB440
Lsi05G002600Cucurbita moschata (Rifu)cmolsiB237
Lsi05G002600Cucurbita moschata (Rifu)cmolsiB430
Lsi05G002600Cucurbita pepo (Zucchini)cpelsiB470
Lsi05G002600Cucurbita pepo (Zucchini)cpelsiB511
Lsi05G002600Melon (DHL92) v3.5.1lsimeB368
Lsi05G002600Watermelon (Charleston Gray)lsiwcgB332
Lsi05G002600Cucumber (Gy14) v2cgyblsiB198
Lsi05G002600Melon (DHL92) v3.6.1lsimedB384