CSPI03G17930 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GAAAAAAATGGTAAGAGGAACAAAATCGAGGCAAAAAGAAGAAAAAAGAAAAGAGAAAGGAAAACGTGACTGACGAACAGAACAAGAGGAGAAGAAGAAGAAGAGAGATAGAGGGAGTGGGGGCATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTAATTCTCTGCTTTTCCCCTTCTGCTGCACTTTCCCTTTTCGAACTATCTGATTTGAGGCTCTCAATTTCATCAACCGATGAACATCATGGGTTCATTCTTTTCATTTCTCTGAGAAATTTGAGTTTGTTTACAAGGGCTGCTAGTATTTGCTGCTTCTTGTGTTTTCAATTTGGTGTTTTGAATGACGGATGCTTTTTATGTGTCTACTGAACGCCCGAGTAGAACTTTTGATTGAGCTTAATCGAATTGAATTGCTTTTTATGTGGGATTCTGTTTTTTGAGCTCCTTTAGGTCTTAGCTCCTCGGATTGGCTATCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATGGTACGCTCTTCTTTGCTCTTTTAAATTTCATCTTTGCTAA ATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTCTTAGCTCCTCGGATTGGCTATCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATGGTACGCTCTTCTTTGCTCTTTTAAATTTCATCTTTGCTAA ATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTCTTAGCTCCTCGGATTGGCTATCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATGGTACGCTCTTCTTTGCTCTTTTAAATTTCATCTTTGCTAA
BLAST of CSPI03G17930 vs. Swiss-Prot
Match: ATG5_ARATH (Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 7.3e-29 Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 1
BLAST of CSPI03G17930 vs. Swiss-Prot
Match: ATG5_ORYSJ (Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 3.6e-28 Identity = 50/75 (66.67%), Postives = 64/75 (85.33%), Query Frame = 1
BLAST of CSPI03G17930 vs. Swiss-Prot
Match: ATG5_ORYSI (Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2) HSP 1 Score: 125.2 bits (313), Expect = 3.6e-28 Identity = 50/75 (66.67%), Postives = 64/75 (85.33%), Query Frame = 1
BLAST of CSPI03G17930 vs. Swiss-Prot
Match: ATG5_DICDI (Autophagy protein 5 OS=Dictyostelium discoideum GN=atg5 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 6.2e-12 Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1
BLAST of CSPI03G17930 vs. Swiss-Prot
Match: ATG5_EMENI (Autophagy protein 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg5 PE=3 SV=2) HSP 1 Score: 62.0 bits (149), Expect = 3.8e-09 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
BLAST of CSPI03G17930 vs. TrEMBL
Match: A0A0A0LA41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G197920 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 3.0e-45 Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1
BLAST of CSPI03G17930 vs. TrEMBL
Match: V4S1S6_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 8.9e-34 Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1
BLAST of CSPI03G17930 vs. TrEMBL
Match: V4U4U7_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 8.9e-34 Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1
BLAST of CSPI03G17930 vs. TrEMBL
Match: V4RJI1_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 8.9e-34 Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1
BLAST of CSPI03G17930 vs. TrEMBL
Match: A0A067E9E3_CITSI (Autophagy protein 5 (Fragment) OS=Citrus sinensis GN=CISIN_1g035508mg PE=3 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 8.9e-34 Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1
BLAST of CSPI03G17930 vs. TAIR10
Match: AT5G17290.1 (AT5G17290.1 autophagy protein Apg5 family) HSP 1 Score: 127.5 bits (319), Expect = 4.1e-30 Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 1
BLAST of CSPI03G17930 vs. NCBI nr
Match: gi|700202344|gb|KGN57477.1| (hypothetical protein Csa_3G197920 [Cucumis sativus]) HSP 1 Score: 188.7 bits (478), Expect = 4.2e-45 Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1
BLAST of CSPI03G17930 vs. NCBI nr
Match: gi|449446111|ref|XP_004140815.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus]) HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38 Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 1
BLAST of CSPI03G17930 vs. NCBI nr
Match: gi|778679952|ref|XP_011651221.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus]) HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38 Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 1
BLAST of CSPI03G17930 vs. NCBI nr
Match: gi|659112388|ref|XP_008456194.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo]) HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38 Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 1
BLAST of CSPI03G17930 vs. NCBI nr
Match: gi|659112386|ref|XP_008456193.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo]) HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38 Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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