CSPI03G17930 (gene) Wild cucumber (PI 183967)

NameCSPI03G17930
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionAutophagy protein 5
LocationChr3 : 13594080 .. 13594761 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAATGGTAAGAGGAACAAAATCGAGGCAAAAAGAAGAAAAAAGAAAAGAGAAAGGAAAACGTGACTGACGAACAGAACAAGAGGAGAAGAAGAAGAAGAGAGATAGAGGGAGTGGGGGCATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTAATTCTCTGCTTTTCCCCTTCTGCTGCACTTTCCCTTTTCGAACTATCTGATTTGAGGCTCTCAATTTCATCAACCGATGAACATCATGGGTTCATTCTTTTCATTTCTCTGAGAAATTTGAGTTTGTTTACAAGGGCTGCTAGTATTTGCTGCTTCTTGTGTTTTCAATTTGGTGTTTTGAATGACGGATGCTTTTTATGTGTCTACTGAACGCCCGAGTAGAACTTTTGATTGAGCTTAATCGAATTGAATTGCTTTTTATGTGGGATTCTGTTTTTTGAGCTCCTTTAGGTCTTAGCTCCTCGGATTGGCTATCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATGGTACGCTCTTCTTTGCTCTTTTAAATTTCATCTTTGCTAA

mRNA sequence

ATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTCTTAGCTCCTCGGATTGGCTATCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATGGTACGCTCTTCTTTGCTCTTTTAAATTTCATCTTTGCTAA

Coding sequence (CDS)

ATGGACGCACTGAAGTACATCTGGGAAGGTGCAATTCCATTACAGATTCATCTCCATGAATCTGAAGTCACCACCGTCCCTCCTCCACCACCTGCAATGGTCTTAGCTCCTCGGATTGGCTATCTGCCTCTGTTGGCTTCTCAGATTAAACCTTACTTCGGTAGCACGCTTCCTCCTGGAGTTGACACCATCTGGTTTGAGTACCAGGGTTTGCCCCTTAAATGGTACGCTCTTCTTTGCTCTTTTAAATTTCATCTTTGCTAA
BLAST of CSPI03G17930 vs. Swiss-Prot
Match: ATG5_ARATH (Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.3e-29
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 1

Query: 2  DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          +A+KY+WEGAIPLQIHLH+S+V + P PPPA+VLAPRIGYLPLL   IKPYF  +LPPG 
Sbjct: 4  EAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLPPGE 63

Query: 62 DTIWFEYQGLPLKWY 77
          D+IWF+Y+G PLKWY
Sbjct: 64 DSIWFDYKGFPLKWY 78

BLAST of CSPI03G17930 vs. Swiss-Prot
Match: ATG5_ORYSJ (Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.6e-28
Identity = 50/75 (66.67%), Postives = 64/75 (85.33%), Query Frame = 1

Query: 2  DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          +A + +W GA+PLQ+HLH+++VTT+PPPPP + L PRIGYLPLL   IK +F STLPPG+
Sbjct: 14 EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPPGI 73

Query: 62 DTIWFEYQGLPLKWY 77
          DT+WFEY+GLPLKWY
Sbjct: 74 DTVWFEYKGLPLKWY 88

BLAST of CSPI03G17930 vs. Swiss-Prot
Match: ATG5_ORYSI (Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 3.6e-28
Identity = 50/75 (66.67%), Postives = 64/75 (85.33%), Query Frame = 1

Query: 2  DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          +A + +W GA+PLQ+HLH+++VTT+PPPPP + L PRIGYLPLL   IK +F STLPPG+
Sbjct: 14 EAARRVWGGAVPLQVHLHDADVTTLPPPPPFLTLGPRIGYLPLLVPIIKAHFSSTLPPGI 73

Query: 62 DTIWFEYQGLPLKWY 77
          DT+WFEY+GLPLKWY
Sbjct: 74 DTVWFEYKGLPLKWY 88

BLAST of CSPI03G17930 vs. Swiss-Prot
Match: ATG5_DICDI (Autophagy protein 5 OS=Dictyostelium discoideum GN=atg5 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.2e-12
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1

Query: 2  DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          D  + IWEG IP+   L   ++T+   P P  ++APR  Y PL+ S +K YF S+    +
Sbjct: 7  DIKRSIWEGKIPIVFTLSPDDLTSHLSPSPYTLMAPRNSYFPLITSLVKDYFSSSTLVLL 66

Query: 62 DTIWFEYQGLPLKWY 77
          D +W EY+G+PLKW+
Sbjct: 67 DEMWLEYRGIPLKWH 81

BLAST of CSPI03G17930 vs. Swiss-Prot
Match: ATG5_EMENI (Autophagy protein 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg5 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-09
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1

Query: 5  KYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGVDTI 64
          K +WEG IPL+I L  SE  T     P ++  PRI YLP L  ++K +F S+L     + 
Sbjct: 11 KSVWEGQIPLKIVLAPSESRTYDQTDPYLISYPRISYLPSLLPRLKAFFSSSLIDPTASQ 70

Query: 65 ----WFEYQGLPLKWY 77
              WF ++G+PLKW+
Sbjct: 71 PHDGWFSFEGVPLKWH 86

BLAST of CSPI03G17930 vs. TrEMBL
Match: A0A0A0LA41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G197920 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.0e-45
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKWYALLCSFKFHLC 88
          VDTIWFEYQGLPLKWYALLC FKFHLC
Sbjct: 61 VDTIWFEYQGLPLKWYALLCCFKFHLC 87

BLAST of CSPI03G17930 vs. TrEMBL
Match: V4S1S6_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.9e-34
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 61 VDTIWFEYQGLPLKWY 77
          VDTIWFEY+GLPLKWY
Sbjct: 63 VDTIWFEYKGLPLKWY 78

BLAST of CSPI03G17930 vs. TrEMBL
Match: V4U4U7_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.9e-34
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 61 VDTIWFEYQGLPLKWY 77
          VDTIWFEY+GLPLKWY
Sbjct: 63 VDTIWFEYKGLPLKWY 78

BLAST of CSPI03G17930 vs. TrEMBL
Match: V4RJI1_9ROSI (Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.9e-34
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 3  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 62

Query: 61 VDTIWFEYQGLPLKWY 77
          VDTIWFEY+GLPLKWY
Sbjct: 63 VDTIWFEYKGLPLKWY 78

BLAST of CSPI03G17930 vs. TrEMBL
Match: A0A067E9E3_CITSI (Autophagy protein 5 (Fragment) OS=Citrus sinensis GN=CISIN_1g035508mg PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.9e-34
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1

Query: 1   MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
           M+A KY+WEGAIPLQIHLHESEVTT+PPPPPA++LAPRIGYLPLL   IKPYFGS+LPPG
Sbjct: 49  MEARKYVWEGAIPLQIHLHESEVTTLPPPPPALILAPRIGYLPLLVGLIKPYFGSSLPPG 108

Query: 61  VDTIWFEYQGLPLKWY 77
           VDTIWFEY+GLPLKWY
Sbjct: 109 VDTIWFEYKGLPLKWY 124

BLAST of CSPI03G17930 vs. TAIR10
Match: AT5G17290.1 (AT5G17290.1 autophagy protein Apg5 family)

HSP 1 Score: 127.5 bits (319), Expect = 4.1e-30
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 1

Query: 2  DALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPGV 61
          +A+KY+WEGAIPLQIHLH+S+V + P PPPA+VLAPRIGYLPLL   IKPYF  +LPPG 
Sbjct: 4  EAVKYVWEGAIPLQIHLHKSDVASHPAPPPALVLAPRIGYLPLLIPLIKPYFKDSLPPGE 63

Query: 62 DTIWFEYQGLPLKWY 77
          D+IWF+Y+G PLKWY
Sbjct: 64 DSIWFDYKGFPLKWY 78

BLAST of CSPI03G17930 vs. NCBI nr
Match: gi|700202344|gb|KGN57477.1| (hypothetical protein Csa_3G197920 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.2e-45
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKWYALLCSFKFHLC 88
          VDTIWFEYQGLPLKWYALLC FKFHLC
Sbjct: 61 VDTIWFEYQGLPLKWYALLCCFKFHLC 87

BLAST of CSPI03G17930 vs. NCBI nr
Match: gi|449446111|ref|XP_004140815.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKW-------YALLCS 82
          VDTIWFEYQGLPLKW       + LLC+
Sbjct: 61 VDTIWFEYQGLPLKWNIPTGVLFDLLCA 88

BLAST of CSPI03G17930 vs. NCBI nr
Match: gi|778679952|ref|XP_011651221.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKW-------YALLCS 82
          VDTIWFEYQGLPLKW       + LLC+
Sbjct: 61 VDTIWFEYQGLPLKWNIPTGVLFDLLCA 88

BLAST of CSPI03G17930 vs. NCBI nr
Match: gi|659112388|ref|XP_008456194.1| (PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKW-------YALLCS 82
          VDTIWFEYQGLPLKW       + LLC+
Sbjct: 61 VDTIWFEYQGLPLKWNIPTGVLFDLLCA 88

BLAST of CSPI03G17930 vs. NCBI nr
Match: gi|659112386|ref|XP_008456193.1| (PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 1

Query: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60
          MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG
Sbjct: 1  MDALKYIWEGAIPLQIHLHESEVTTVPPPPPAMVLAPRIGYLPLLASQIKPYFGSTLPPG 60

Query: 61 VDTIWFEYQGLPLKW-------YALLCS 82
          VDTIWFEYQGLPLKW       + LLC+
Sbjct: 61 VDTIWFEYQGLPLKWNIPTGVLFDLLCA 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATG5_ARATH7.3e-2972.00Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1[more]
ATG5_ORYSJ3.6e-2866.67Autophagy protein 5 OS=Oryza sativa subsp. japonica GN=ATG5 PE=2 SV=1[more]
ATG5_ORYSI3.6e-2866.67Autophagy protein 5 OS=Oryza sativa subsp. indica GN=ATG5 PE=3 SV=2[more]
ATG5_DICDI6.2e-1241.33Autophagy protein 5 OS=Dictyostelium discoideum GN=atg5 PE=3 SV=1[more]
ATG5_EMENI3.8e-0940.79Autophagy protein 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 11... [more]
Match NameE-valueIdentityDescription
A0A0A0LA41_CUCSA3.0e-4598.85Uncharacterized protein OS=Cucumis sativus GN=Csa_3G197920 PE=4 SV=1[more]
V4S1S6_9ROSI8.9e-3485.53Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
V4U4U7_9ROSI8.9e-3485.53Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
V4RJI1_9ROSI8.9e-3485.53Autophagy protein 5 OS=Citrus clementina GN=CICLE_v10005246mg PE=3 SV=1[more]
A0A067E9E3_CITSI8.9e-3485.53Autophagy protein 5 (Fragment) OS=Citrus sinensis GN=CISIN_1g035508mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G17290.14.1e-3072.00 autophagy protein Apg5 family[more]
Match NameE-valueIdentityDescription
gi|700202344|gb|KGN57477.1|4.2e-4598.85hypothetical protein Csa_3G197920 [Cucumis sativus][more]
gi|449446111|ref|XP_004140815.1|8.6e-3888.64PREDICTED: autophagy protein 5 isoform X1 [Cucumis sativus][more]
gi|778679952|ref|XP_011651221.1|8.6e-3888.64PREDICTED: autophagy protein 5 isoform X2 [Cucumis sativus][more]
gi|659112388|ref|XP_008456194.1|8.6e-3888.64PREDICTED: autophagy protein 5 isoform X2 [Cucumis melo][more]
gi|659112386|ref|XP_008456193.1|8.6e-3888.64PREDICTED: autophagy protein 5 isoform X1 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007239Atg5
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
biological_process GO:0006810 transport
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G17930.1CSPI03G17930.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007239Autophagy-related protein 5PANTHERPTHR13040AUTOPHAGY PROTEIN 5coord: 1..76
score: 3.3