Csa3G047800 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G047800
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionNuclear transcription factor Y subunit B-3; contains IPR003957 (Transcription factor, CBFA/NFYB, DNA topoisomerase), IPR009072 (Histone-fold)
LocationChr3 : 3332696 .. 3333441 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGAGATATTGCATTTTAATTTGGTTAAATTAAATTTTGTTGTTCAATGATAGCAACTTGGCAACTCTCCCATTCCCATCCCCTTTACAAACATCTCTCTATCTCTCTCTCTCTCTCACACACACACACACACACATTTCACTTCCACATCCCCTAATTTCACAAACCCTAATTCCTCTTCCCCTCTTCCATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCAAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAG

mRNA sequence

ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCAAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAG

Coding sequence (CDS)

ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCAAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAG

Protein sequence

MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTTGRPR*
Homology
[Close]
BLAST of Csa3G047800 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-54
Identity = 118/192 (61.46%), Postives = 125/192 (65.10%), Query Frame = 1 

Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPN-VYGSNGPRW 180
           RT L    +                DGGG +GG GG             N +YG+ G   
Sbjct: 121 RTGLGRPQTGGEVGEHQ---RDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGS 180

Query: 181 DGPGFSTTGRPR 185
           D  G + +GR R
Sbjct: 181 DSGGGAASGRTR 189

[Close]
BLAST of Csa3G047800 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.9e-53
Identity = 112/162 (69.14%), Postives = 120/162 (74.07%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQK-SPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASSAANSAAAGNSGFFDGGGEFGGAGGSGM-GMGMTTTM 161
           R            G  G   GGG   G+GG+ M G GM TTM
Sbjct: 121 RQGDKE-------GGGG---GGGAGSGSGGAPMYGGGMVTTM 152

[Close]
BLAST of Csa3G047800 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-43
Identity = 94/164 (57.32%), Postives = 108/164 (65.85%), Query Frame = 1 

Query: 2   ADSDNDSGGGYQKSPSPR---------EHDRLLPIANVGRIMKKALPGNAKISKDAKETV 61
           A +    GGG  +S SPR         E DR LPIAN+ RIMKKA+P N KI+KDAKETV
Sbjct: 4   APASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 63

Query: 62  QECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEG 121
           QECVSEFISF+T EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK+YLQ++RE+EG
Sbjct: 64  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEG 123

Query: 122 ERTTLASRDSASSAANSAAAGNSGFFDGGGE-FGGAGGSGMGMG 156
           +    A   S+  +    A G+ G      E  G  G    GMG
Sbjct: 124 DSKLTAK--SSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMG 165

[Close]
BLAST of Csa3G047800 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 175.3 bits (443), Expect = 6.4e-43
Identity = 90/147 (61.22%), Postives = 101/147 (68.71%), Query Frame = 1 

Query: 9   GGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEAS 68
           GGG       RE DR LPIAN+ RIMKKA+P N KI+KDAKETVQECVSEFISF+T EAS
Sbjct: 27  GGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEAS 86

Query: 69  DKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASSAAN 128
           DKC  EKRKTINGDDLLWAMATLGFEDY++PLK+YLQ++RE+EG+           S   
Sbjct: 87  DKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD-----------SKLT 146

Query: 129 SAAAGNSGFFDGGGEFGGAGGSGMGMG 156
           + A   S   D  G  GG+  S  GMG
Sbjct: 147 AKAGDGSVKKDVLGSHGGSSSSAQGMG 162

[Close]
BLAST of Csa3G047800 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 9.2e-42
Identity = 87/137 (63.50%), Postives = 100/137 (72.99%), Query Frame = 1 

Query: 1   MADSDND-SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+ +  +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+     S
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNK--GS 120

Query: 121 RDSASSAANSAAAGNSG 137
             S   +   A  G SG
Sbjct: 121 GKSGDGSNRDAGGGVSG 135

[Close]
BLAST of Csa3G047800 vs. TrEMBL
Match: A0A0A0L4U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047800 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.5e-102
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180
           DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

Query: 181 GRPR 185
           GRPR
Sbjct: 181 GRPR 184

[Close]
BLAST of Csa3G047800 vs. TrEMBL
Match: A0A022QLU9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022879mg PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.3e-54
Identity = 120/202 (59.41%), Postives = 137/202 (67.82%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK+YL ++REIEGE+T++A+ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVAAV 120

Query: 121 DSASSAANSAAAGNSGF-----FDGGGE----------FGGAGG---SGMGMGMTTTMPP 180
             A+   ++  +G  G+     + GGG           +GG GG    G G  + TT   
Sbjct: 121 KDAAGGGSAVTSGGGGYNGGGIYGGGGPVMGYHHGGQMYGGGGGFQHIGGGGNLDTTGSS 180

Query: 181 NVYGSNGPRWDGPGFSTTGRPR 185
             YG       G G +TTGR R
Sbjct: 181 GSYGGG----SGGGGATTGRQR 198

[Close]
BLAST of Csa3G047800 vs. TrEMBL
Match: A0A022PN77_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021836mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.3e-54
Identity = 119/202 (58.91%), Postives = 137/202 (67.82%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK+YL ++REIEGE+T++++ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVSAV 120

Query: 121 DSASSAANSAAAGNSGFFDGGGEFGGA-------------GGSGM-----GMGMTTTMPP 180
             A+   ++  +G  G ++GGG +GG              GG G      G  + TT   
Sbjct: 121 KDAAGGGSAVTSGGGG-YNGGGIYGGGGPVMGYHHGGQMYGGGGFQHIGGGGNLDTTGSS 180

Query: 181 NVYGSNGPRWDGPGFSTTGRPR 185
             YG       G G +TTGR R
Sbjct: 181 GSYGGG----SGGGGATTGRQR 197

[Close]
BLAST of Csa3G047800 vs. TrEMBL
Match: W9QFK9_9ROSA (Nuclear transcription factor Y subunit B-3 OS=Morus notabilis GN=L484_018224 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-53
Identity = 130/212 (61.32%), Postives = 141/212 (66.51%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSP-------SPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           MADSDNDSGGG   +        S RE DRLLPIANV RIMKKALP NAKISKDAKETVQ
Sbjct: 1   MADSDNDSGGGGNNNRGDANSEMSLREQDRLLPIANVSRIMKKALPANAKISKDAKETVQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFRE EGE
Sbjct: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFRETEGE 120

Query: 121 R---TTLA-SRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGS-- 180
           +   TT+A  +D A+ +  +  AG  GF DGG   GG G  GM M M      +VYGS  
Sbjct: 121 KGGATTVAREKDVAAGSVGNGGAGGVGFGDGGA--GGGGVYGMVM-MGQQHQGHVYGSGG 180

Query: 181 ---------------NGPRWDGPGFSTTGRPR 185
                          NGP    PG S  GRPR
Sbjct: 181 FHQLGVGSGGSGLAKNGPGHISPG-SNLGRPR 208

[Close]
BLAST of Csa3G047800 vs. TrEMBL
Match: B9IH15_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s00780g PE=4 SV=2)

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-53
Identity = 120/205 (58.54%), Postives = 136/205 (66.34%), Query Frame = 1 

Query: 1   MADSDNDSGG------GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQE 60
           MADSDN+SG        Y    SPRE DRLLPIANV RIMKKALP NAKISKDAKETVQE
Sbjct: 1   MADSDNESGEQNNSNTNYSTETSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQE 60

Query: 61  CVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGER 120
           CVSEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ+FRE+EGE+
Sbjct: 61  CVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKFREMEGEK 120

Query: 121 TT----LASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTM---------- 180
           T     +   D     A      NSG  + GG FGG GG  M +GM ++M          
Sbjct: 121 TAAMGIVRQGDQRDGTAGDGGVVNSG--NPGGGFGGGGGGNMYVGMQSSMAMMGHHHYQH 180

Query: 181 --PPNVYGSNGPRWDGPGFSTTGRP 184
             P N+YG  G        +++GRP
Sbjct: 181 RHPGNMYGPGGG-------ASSGRP 196

[Close]
BLAST of Csa3G047800 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-55
Identity = 118/192 (61.46%), Postives = 125/192 (65.10%), Query Frame = 1 

Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPN-VYGSNGPRW 180
           RT L    +                DGGG +GG GG             N +YG+ G   
Sbjct: 121 RTGLGRPQTGGEVGEHQ---RDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGS 180

Query: 181 DGPGFSTTGRPR 185
           D  G + +GR R
Sbjct: 181 DSGGGAASGRTR 189

[Close]
BLAST of Csa3G047800 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 208.0 bits (528), Expect = 5.0e-54
Identity = 112/162 (69.14%), Postives = 120/162 (74.07%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQK-SPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASSAANSAAAGNSGFFDGGGEFGGAGGSGM-GMGMTTTM 161
           R            G  G   GGG   G+GG+ M G GM TTM
Sbjct: 121 RQGDKE-------GGGG---GGGAGSGSGGAPMYGGGMVTTM 152

[Close]
BLAST of Csa3G047800 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 171.4 bits (433), Expect = 5.2e-43
Identity = 95/174 (54.60%), Postives = 109/174 (62.64%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQ---------KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKET 60
           MA+S    GGG           +S + RE DR LPIAN+ RIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIE 120
           +QECVSEFISFVT EASDKC  EKRKTINGDDLLWAMATLGFEDY+DPLK+YL R+RE+E
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GERTTLASRDSASSAANSAAAGNSGFFDGGGEFG----GAGGSGMGMGMTTTMP 162
           G+ T  + +   SSA           F    + G    G  G+  G  M   MP
Sbjct: 121 GD-TKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQGPYGNSQGSNMMVQMP 173

[Close]
BLAST of Csa3G047800 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 167.9 bits (424), Expect = 5.8e-42
Identity = 89/157 (56.69%), Postives = 105/157 (66.88%), Query Frame = 1 

Query: 6   NDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVT 65
           ++SGG    +S   RE DR LPIAN+ RIMK+ LP N KI+KDAKE VQECVSEFISFVT
Sbjct: 15  HESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVT 74

Query: 66  GEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSAS 125
            EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+ T  +++    
Sbjct: 75  SEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD-TKGSAKGGDP 134

Query: 126 SAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMP 162
           +A     +  +G F      G  G S     M   MP
Sbjct: 135 NAKKDGQSSQNGQFSQLAHQGPYGNSQAQQHMMVPMP 170

[Close]
BLAST of Csa3G047800 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 165.2 bits (417), Expect = 3.7e-41
Identity = 90/163 (55.21%), Postives = 105/163 (64.42%), Query Frame = 1 

Query: 1   MADSDND-SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+ +  +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTT--- 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+    +    
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREVFETNSVLFI 120

Query: 121 -----LASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGM 155
                L          ++  +G SG  DG     G G SG  M
Sbjct: 121 PWDWLLTHHLLMQLEGDNKGSGKSG--DGSNRDAGGGVSGEEM 161

[Close]
BLAST of Csa3G047800 vs. NCBI nr
Match: gi|449461061|ref|XP_004148262.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis sativus])

HSP 1 Score: 380.2 bits (975), Expect = 2.1e-102
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180
           DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

Query: 181 GRPR 185
           GRPR
Sbjct: 181 GRPR 184

[Close]
BLAST of Csa3G047800 vs. NCBI nr
Match: gi|659096321|ref|XP_008449032.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo])

HSP 1 Score: 354.8 bits (909), Expect = 9.4e-95
Identity = 177/189 (93.65%), Postives = 178/189 (94.18%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 64  MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 123

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 124 SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 183

Query: 121 DS-ASSAANSAAAGNSGFFDGGGEFGG----AGGSGMGMGMTTTMPPNVYGSNGPRWDGP 180
           DS ASSA NSAAAGNSGFFDGGGEFGG      G GMGMGMT  MPPNVYGS+GPRWDGP
Sbjct: 184 DSAASSAPNSAAAGNSGFFDGGGEFGGGMGMGMGMGMGMGMTMAMPPNVYGSDGPRWDGP 243

Query: 181 GFSTTGRPR 185
           GFSTTGRPR
Sbjct: 244 GFSTTGRPR 252

[Close]
BLAST of Csa3G047800 vs. NCBI nr
Match: gi|658028885|ref|XP_008349882.1| (PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-3-like [Malus domestica])

HSP 1 Score: 223.8 bits (569), Expect = 2.5e-55
Identity = 124/195 (63.59%), Postives = 140/195 (71.79%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSP-SPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG + KS  SPRE DRLLPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGAHGKSELSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK+YLQRFRE+EGE++++A+
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKSSVAA 120

Query: 121 RDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRW------- 180
           RD   S       G  G+  GGG  GG+ G G G+        +VYG +G          
Sbjct: 121 RDKDGS---GGGIGGVGYERGGGGGGGSSG-GAGVYWQQQHQGHVYGGSGFHQMGVSGVG 180

Query: 181 ---DGPGFSTTGRPR 185
               GPG S  GRPR
Sbjct: 181 MGKSGPG-SNMGRPR 190

[Close]
BLAST of Csa3G047800 vs. NCBI nr
Match: gi|470110598|ref|XP_004291567.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 220.3 bits (560), Expect = 2.8e-54
Identity = 119/179 (66.48%), Postives = 133/179 (74.30%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPS---PREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVS 60
           MADSDNDSGGG+    S   PRE DRLLPIANV RIMKKALP NAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGGHNSPKSELSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTL 120
           EFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK+YLQRFRE+EGE++++
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKSSM 120

Query: 121 ASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPG 177
           A+RD  SS       G    F+GGG   GAGG G+        P +VYG  G    G G
Sbjct: 121 AARDKDSS-------GGVVGFEGGG--AGAGGGGV-YWQQQPQPGHVYGGGGFHQMGVG 169

[Close]
BLAST of Csa3G047800 vs. NCBI nr
Match: gi|657969216|ref|XP_008376324.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Malus domestica])

HSP 1 Score: 219.5 bits (558), Expect = 4.7e-54
Identity = 110/149 (73.83%), Postives = 123/149 (82.55%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSP-SPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG + KS  SPRE DRLLPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGAHTKSELSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK+YLQRFRE+EGE++++++
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKSSVSA 120

Query: 121 RDSASSAANSAAAGNSGFFDGGGEFGGAG 149
           RD   S   +   G  G   GGG  GGAG
Sbjct: 121 RDKDGSGGGNGGVGYEG---GGGSSGGAG 146

The following BLAST results are available for this feature:
BLAST of Csa3G047800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB2_ARATH2.1e-5461.46Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB3_ARATH8.9e-5369.14Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2... [more]
NFYB_MAIZE1.7e-4357.32Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1[more]
NFYB3_ORYSJ6.4e-4361.22Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF... [more]
NFYB1_ARATH9.2e-4263.50Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1... [more]
BLAST of Csa3G047800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4U4_CUCSA1.5e-102100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047800 PE=4 SV=1[more]
A0A022QLU9_ERYGU4.3e-5459.41Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022879mg PE=4 SV=1[more]
A0A022PN77_ERYGU7.3e-5458.91Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021836mg PE=4 SV=1[more]
W9QFK9_9ROSA1.6e-5361.32Nuclear transcription factor Y subunit B-3 OS=Morus notabilis GN=L484_018224 PE=... [more]
B9IH15_POPTR2.8e-5358.54Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s00780g PE=4 SV=2[more]
BLAST of Csa3G047800 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47640.11.2e-5561.46 nuclear factor Y, subunit B2[more]
AT4G14540.15.0e-5469.14 nuclear factor Y, subunit B3[more]
AT3G53340.15.2e-4354.60 nuclear factor Y, subunit B10[more]
AT2G37060.15.8e-4256.69 nuclear factor Y, subunit B8[more]
AT2G38880.83.7e-4155.21 nuclear factor Y, subunit B1[more]
BLAST of Csa3G047800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461061|ref|XP_004148262.1|2.1e-102100.00PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis sativus][more]
gi|659096321|ref|XP_008449032.1|9.4e-9593.65PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo][more]
gi|658028885|ref|XP_008349882.1|2.5e-5563.59PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-3-like ... [more]
gi|470110598|ref|XP_004291567.1|2.8e-5466.48PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp... [more]
gi|657969216|ref|XP_008376324.1|4.7e-5473.83PREDICTED: nuclear transcription factor Y subunit B-3-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU145743cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G047800.1Csa3G047800.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU145743CU145743transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 55..71
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 24..88
score: 8.1
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 14..127
score: 1.1
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 22..124
score: 2.79
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 52..70
score: 2.4E-20coord: 71..89
score: 2.4E-20coord: 90..108
score: 2.4
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 1..168
score: 6.0
NoneNo IPR availablePANTHERPTHR11064:SF45SUBFAMILY NOT NAMEDcoord: 1..168
score: 6.0