Cla97C10G188720 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G188720
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	nuclear transcription factor Y subunit B-3-like
Location	Cla97Chr10 : 4821971 .. 4822498 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

mRNA sequence

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

Coding sequence (CDS)

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

Protein sequence

MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR

Homology

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BLAST of Cla97C10G188720 vs. NCBI nr
Match: XP_022951016.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata])

HSP 1 Score: 300.4 bits (768), Expect = 3.9e-78
Identity = 150/178 (84.27%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDS GG QKSPSPREHDRLLPIANVGRIMKKALPGNAKISK+AKETVQECVSEFI
Sbjct: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SF+TGEASDKCH EKRKTINGDDLLWAMATLGFEDYVDPLK++LQRFREIEGE+TTLASR
Sbjct: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120

Query: 121 DSASAANPAGATNSTFFDGGGEFGGGMG----MSMPPNVYGSNGPRWDGPGFTTTGRP 175
           D  S A+ + A NS +FDGG EFGGGMG    M+MPP+VYGSNGPRWDGP F +TGRP
Sbjct: 121 DGGS-ASASTAANSAYFDGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPAFNSTGRP 177

[Close]

BLAST of Cla97C10G188720 vs. NCBI nr
Match: XP_023540531.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.7 bits (766), Expect = 6.6e-78
Identity = 150/179 (83.80%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDS GG  KSPSPREHDRLLPIANVGRIMKKALPGNAKISK+AKETVQECVSEFI
Sbjct: 1   MADSDNDSAGGNHKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SF+TGEASDKCH EKRKTINGDDLLWAMATLGFEDYVDPLK++LQRFREIEGE+TTLASR
Sbjct: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120

Query: 121 DSASAANPAG-ATNSTFFDGGGEFGGGMG----MSMPPNVYGSNGPRWDGPGFTTTGRP 175
           D  S +  A  A NS +FDGG EFGGGMG    M+MPPNVYGSNGPRWDGP F +TGRP
Sbjct: 121 DGGSGSAAASTAANSAYFDGGAEFGGGMGTMMTMNMPPNVYGSNGPRWDGPAFNSTGRP 179

[Close]

BLAST of Cla97C10G188720 vs. NCBI nr
Match: XP_023005572.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 4.3e-77
Identity = 149/179 (83.24%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDS GG QKSPSPREHDRLLPIANV RIMKKALPGNAKISK+AKETVQECVSEFI
Sbjct: 1   MADSDNDSAGGNQKSPSPREHDRLLPIANVSRIMKKALPGNAKISKEAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SF+TGEASDKCH EKRKTINGDDLLWAMATLGFEDYVDPLK++LQRFREIEGE+TTLASR
Sbjct: 61  SFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASR 120

Query: 121 DSASAANPAG-ATNSTFFDGGGEFGGGMG----MSMPPNVYGSNGPRWDGPGFTTTGRP 175
           D  S +  A  A NST+FDGG EFGGGMG    M+MPPNVYGSNGPRW+GP F +T RP
Sbjct: 121 DGGSGSAAASTAANSTYFDGGAEFGGGMGTMMTMNMPPNVYGSNGPRWNGPAFNSTSRP 179

[Close]

BLAST of Cla97C10G188720 vs. NCBI nr
Match: XP_023553390.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.0 bits (715), Expect = 5.4e-72
Identity = 145/180 (80.56%), Postives = 147/180 (81.67%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 -----DSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR 176
                                          MGM+MPPNVYGSNGPRWDGPGFTTTGRPR
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 180

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BLAST of Cla97C10G188720 vs. NCBI nr
Match: XP_022965194.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita maxima])

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 145/182 (79.67%), Postives = 147/182 (80.77%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSASAANPAGATNSTFFDGGGEFGG-------GMGMSMPPNVYGSNGPRWDGPGFTTTGR 176
                                           GM M+MPPNVYGSNGPRWDGPGFTTTGR
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGMTMTMPPNVYGSNGPRWDGPGFTTTGR 180

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BLAST of Cla97C10G188720 vs. TrEMBL
Match: tr|A0A0A0L4U4|A0A0A0L4U4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047800 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.6e-70
Identity = 143/184 (77.72%), Postives = 146/184 (79.35%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSASAANPAGATNSTFFDGGGEFGGGMG---------MSMPPNVYGSNGPRWDGPGFTTT 176
                                                 +MPPNVYGSNGPRWDGPGF+TT
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTMPPNVYGSNGPRWDGPGFSTT 180

[Close]

BLAST of Cla97C10G188720 vs. TrEMBL
Match: tr|A0A1S3BL47|A0A1S3BL47_CUCME (nuclear transcription factor Y subunit B-3-like OS=Cucumis melo OX=3656 GN=LOC103491025 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 4.1e-68
Identity = 141/189 (74.60%), Postives = 144/189 (76.19%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 D--------------SASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGP 176
           D                                             PNVYGS+GPRWDGP
Sbjct: 121 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNVYGSDGPRWDGP 180

[Close]

BLAST of Cla97C10G188720 vs. TrEMBL
Match: tr|A0A0L9VBC0|A0A0L9VBC0_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g096700 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.3e-50
Identity = 121/192 (63.02%), Postives = 135/192 (70.31%), Query Frame = 0


Query: 1   MADSDNDSGG----GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           MADSDNDSGG    G     SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGTHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTT 120
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFRE+EGE+T 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTV 120

Query: 121 LA-SRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGS------------NGPRW 176
            A  +D+  A+N   ATNS +    G +G G  M    +VYGS             GP +
Sbjct: 121 AARDKDAPPASN---ATNSAY--ESGSYGAGGIMMHQGHVYGSGGFHQVGGSVIKGGPAY 180

[Close]

BLAST of Cla97C10G188720 vs. TrEMBL
Match: tr|A0A0S3S6N1|A0A0S3S6N1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G201200 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.3e-50
Identity = 121/192 (63.02%), Postives = 135/192 (70.31%), Query Frame = 0


Query: 1   MADSDNDSGG----GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           MADSDNDSGG    G     SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGTHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTT 120
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFRE+EGE+T 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTV 120

Query: 121 LA-SRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGS------------NGPRW 176
            A  +D+  A+N   ATNS +    G +G G  M    +VYGS             GP +
Sbjct: 121 AARDKDAPPASN---ATNSAY--ESGSYGAGGIMMHQGHVYGSGGFHQVGGSVIKGGPAY 180

[Close]

BLAST of Cla97C10G188720 vs. TrEMBL
Match: tr|A0A1S3VYE8|A0A1S3VYE8_VIGRR (nuclear transcription factor Y subunit B-3-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106779608 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.9e-50
Identity = 121/194 (62.37%), Postives = 135/194 (69.59%), Query Frame = 0


Query: 1   MADSDNDSGG----GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           MADSDNDSGG    G     SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGTHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTT 120
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFRE+EGE+T 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTV 120

Query: 121 LA-SRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGS--------------NGP 176
            A  +D+  A+N   ATNS +    G +G G  M    +VYGS               GP
Sbjct: 121 AARDKDAPPASN---ATNSVY--ESGSYGAGGIMMHQGHVYGSGGFHQVGGSGAAIKGGP 180

[Close]

BLAST of Cla97C10G188720 vs. Swiss-Prot
Match: sp|Q9FGJ3|NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.6e-49
Identity = 100/124 (80.65%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 118
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

[Close]

BLAST of Cla97C10G188720 vs. Swiss-Prot
Match: sp|O23310|NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.3e-48
Identity = 101/152 (66.45%), Postives = 112/152 (73.68%), Query Frame = 0


Query: 1   MADSDNDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMSM 152
           R                      +GGGM  +M
Sbjct: 121 RQGXXXXXXXXXXXXXXXXXXXMYGGGMVTTM 152

[Close]

BLAST of Cla97C10G188720 vs. Swiss-Prot
Match: sp|Q75IZ7|NFYB8_ORYSJ (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.2e-47
Identity = 95/118 (80.51%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 1   MADSDNDSGGGYQ----KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           M DSDNDSGG       +  SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGER 115
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK +L +FREIEGER
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGER 118

[Close]

BLAST of Cla97C10G188720 vs. Swiss-Prot
Match: sp|Q69J40|NFYBA_ORYSJ (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-45
Identity = 90/116 (77.59%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MADSDNDSGG--GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSE 60
           M DSDN+SGG     +  S RE DR LPIANV RIMK+ALP NAKISKDAKETVQECVSE
Sbjct: 1   MPDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSE 60

Query: 61  FISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGER 115
           FISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDY+DPLKL+L +FRE+EGE+
Sbjct: 61  FISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEK 116

[Close]

BLAST of Cla97C10G188720 vs. Swiss-Prot
Match: sp|P25209|NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-40
Identity = 88/140 (62.86%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 19  REHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKT 78
           RE DR LPIAN+ RIMKKA+P N KI+KDAKETVQECVSEFISF+T EASDKC  EKRKT
Sbjct: 30  REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 89

Query: 79  INGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE-RTTLASRDSA---SAANPAGATNS 138
           INGDDLLWAMATLGFEDY++PLK++LQ++RE+EG+ + T  S D +    A    GA++S
Sbjct: 90  INGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKDALGHVGASSS 149

Query: 139 TFFDGG--GEFGGGMGMSMP 153
                G  G +  GMG   P
Sbjct: 150 AAEGMGQQGAYNQGMGYMQP 169

[Close]

BLAST of Cla97C10G188720 vs. TAIR10
Match: AT5G47640.1 (nuclear factor Y, subunit B2)

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-50
Identity = 100/124 (80.65%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 118
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

[Close]

BLAST of Cla97C10G188720 vs. TAIR10
Match: AT4G14540.1 (nuclear factor Y, subunit B3)

HSP 1 Score: 191.4 bits (485), Expect = 4.6e-49
Identity = 101/152 (66.45%), Postives = 112/152 (73.68%), Query Frame = 0


Query: 1   MADSDNDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMSM 152
           R                      +GGGM  +M
Sbjct: 121 RQGXXXXXXXXXXXXXXXXXXXMYGGGMVTTM 152

[Close]

BLAST of Cla97C10G188720 vs. TAIR10
Match: AT2G38880.8 (nuclear factor Y, subunit B1)

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-40
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 1   MADS-DNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+  + +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREI 111
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK++L R+RE+
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREV 111

[Close]

BLAST of Cla97C10G188720 vs. TAIR10
Match: AT2G13570.1 (nuclear factor Y, subunit B7)

HSP 1 Score: 161.8 bits (408), Expect = 3.9e-40
Identity = 75/93 (80.65%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 22  DRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTING 81
           DR LPIANVGRIMKK LPGN KISKDAKETVQECVSEFISFVTGEASDKC  EKRKTING
Sbjct: 38  DRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTING 97

Query: 82  DDLLWAMATLGFEDYVDPLKLHLQRFREIEGER 115
           DD++WA+ TLGFEDYV PLK++L ++R+ EGE+
Sbjct: 98  DDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]

BLAST of Cla97C10G188720 vs. TAIR10
Match: AT2G37060.1 (nuclear factor Y, subunit B8)

HSP 1 Score: 161.8 bits (408), Expect = 3.9e-40
Identity = 81/124 (65.32%), Postives = 97/124 (78.23%), Query Frame = 0


Query: 6   NDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVT 65
           ++SGG    +S   RE DR LPIAN+ RIMK+ LP N KI+KDAKE VQECVSEFISFVT
Sbjct: 15  HESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVT 74

Query: 66  GEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSAS 125
            EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK++L R+RE+EG+     ++ SA 
Sbjct: 75  SEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD-----TKGSAK 133

Query: 126 AANP 129
             +P
Sbjct: 135 GGDP 133

The following BLAST results are available for this feature:

BLAST of Cla97C10G188720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951016.1	3.9e-78	84.27	nuclear transcription factor Y subunit B-3-like [Cucurbita moschata]	[more]
XP_023540531.1	6.6e-78	83.80	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_023005572.1	4.3e-77	83.24	nuclear transcription factor Y subunit B-3-like [Cucurbita maxima]	[more]
XP_023553390.1	5.4e-72	80.56	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965194.1	1.2e-71	79.67	nuclear transcription factor Y subunit B-3-like [Cucurbita maxima]	[more]

BLAST of Cla97C10G188720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4U4\|A0A0A0L4U4_CUCSA	2.6e-70	77.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047800 PE=4 SV=1	[more]
tr\|A0A1S3BL47\|A0A1S3BL47_CUCME	4.1e-68	74.60	nuclear transcription factor Y subunit B-3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0L9VBC0\|A0A0L9VBC0_PHAAN	2.3e-50	63.02	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g096700 PE...	[more]
tr\|A0A0S3S6N1\|A0A0S3S6N1_PHAAN	2.3e-50	63.02	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G...	[more]
tr\|A0A1S3VYE8\|A0A1S3VYE8_VIGRR	3.9e-50	62.37	nuclear transcription factor Y subunit B-3-like OS=Vigna radiata var. radiata OX...	[more]

BLAST of Cla97C10G188720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FGJ3\|NFYB2_ARATH	2.6e-49	80.65	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|O23310\|NFYB3_ARATH	8.3e-48	66.45	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|Q75IZ7\|NFYB8_ORYSJ	9.2e-47	80.51	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
sp\|Q69J40\|NFYBA_ORYSJ	2.3e-45	77.59	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
sp\|P25209\|NFYB_MAIZE	1.3e-40	62.86	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]

BLAST of Cla97C10G188720 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47640.1	1.4e-50	80.65	nuclear factor Y, subunit B2	[more]
AT4G14540.1	4.6e-49	66.45	nuclear factor Y, subunit B3	[more]
AT2G38880.8	1.8e-40	70.27	nuclear factor Y, subunit B1	[more]
AT2G13570.1	3.9e-40	80.65	nuclear factor Y, subunit B7	[more]
AT2G37060.1	3.9e-40	65.32	nuclear factor Y, subunit B8	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048574	long-day photoperiodism, flowering
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003712	transcription cofactor activity
molecular_function	GO:0044212	transcription regulatory region DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G188720.1	Cla97C10G188720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 52..70 score: 52.03 coord: 71..89 score: 39.11 coord: 90..108 score: 36.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..134
None	No IPR available	PANTHER	PTHR11064:SF87	SUBFAMILY NOT NAMED	coord: 1..161
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..161
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 24..88 e-value: 7.5E-28 score: 96.5
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 13..135 e-value: 2.2E-42 score: 146.1
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 22..123
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 55..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G188720	Cla004460	Watermelon (97103) v1	wmwmbB057
Cla97C10G188720	Csa3G047800	Cucumber (Chinese Long) v2	cuwmbB181
Cla97C10G188720	MELO3C014103	Melon (DHL92) v3.5.1	mewmbB430
Cla97C10G188720	ClCG10G004280	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G188720	CSPI03G04080	Wild cucumber (PI 183967)	cpiwmbB184
Cla97C10G188720	Cucsa.042000	Cucumber (Gy14) v1	cgywmbB016
Cla97C10G188720	CmaCh06G006780	Cucurbita maxima (Rimu)	cmawmbB845
Cla97C10G188720	CmaCh16G009650	Cucurbita maxima (Rimu)	cmawmbB338
Cla97C10G188720	CmoCh16G010060	Cucurbita moschata (Rifu)	cmowmbB321
Cla97C10G188720	CmoCh06G006870	Cucurbita moschata (Rifu)	cmowmbB819
Cla97C10G188720	Lsi05G004940	Bottle gourd (USVL1VR-Ls)	lsiwmbB322
Cla97C10G188720	CsGy3G004080	Cucumber (Gy14) v2	cgybwmbB174
Cla97C10G188720	MELO3C014103.2	Melon (DHL92) v3.6.1	medwmbB415
Cla97C10G188720	CsaV3_3G004080	Cucumber (Chinese Long) v3	cucwmbB182
Cla97C10G188720	Bhi11G000359	Wax gourd	wgowmbB003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G188720	Silver-seed gourd	carwmbB0007
Cla97C10G188720	Silver-seed gourd	carwmbB0357
Cla97C10G188720	Silver-seed gourd	carwmbB0613
Cla97C10G188720	Cucurbita maxima (Rimu)	cmawmbB566
Cla97C10G188720	Cucurbita moschata (Rifu)	cmowmbB824
Cla97C10G188720	Bottle gourd (USVL1VR-Ls)	lsiwmbB042
Cla97C10G188720	Watermelon (97103) v1	wmwmbB052