Lsi05G004940 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G004940
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionNuclear transcription factor Y subunit B-3
Locationchr05 : 6245182 .. 6245718 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACTCCGACAACGATTCCGGTGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTCCCGATCGCCAACGTTGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAACGAAAGACGATCAACGGCGATGATTTGCTCTGGGCTATGGCGACCTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCTCCGCCGTCAACTCCGCCGGAGTTGCGAATAGTACGTTCTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGACGATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGATAG

mRNA sequence

ATGGCGGACTCCGACAACGATTCCGGTGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTCCCGATCGCCAACGTTGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAACGAAAGACGATCAACGGCGATGATTTGCTCTGGGCTATGGCGACCTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCTCCGCCGTCAACTCCGCCGGAGTTGCGAATAGTACGTTCTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGACGATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGATAG

Coding sequence (CDS)

ATGGCGGACTCCGACAACGATTCCGGTGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTCCCGATCGCCAACGTTGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAACGAAAGACGATCAACGGCGATGATTTGCTCTGGGCTATGGCGACCTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCTCCGCCGTCAACTCCGCCGGAGTTGCGAATAGTACGTTCTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGACGATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGATAG

Protein sequence

MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAASAVNSAGVANSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR
Homology
[Close]
BLAST of Lsi05G004940 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-52
Identity = 119/194 (61.34%), Postives = 128/194 (65.98%), Query Frame = 1 

Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASAASAVNSAGVANSTFFDGGGEFGGGMGMT---------MPPNVYGSNGP 179
           RT L    +           V      DGGG +GGG GM             ++YG+ G 
Sbjct: 121 RTGLGRPQTGGEVGEHQRDAVG-----DGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGG 180

[Close]
BLAST of Lsi05G004940 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.4e-49
Identity = 105/155 (67.74%), Postives = 115/155 (74.19%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQK-SPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAASAVNSAGVANSTFFDGGGEFGGGMGMTM 155
           R              + S    G   +GGGM  TM
Sbjct: 121 RQGDKEGGGGGGGAGSGS---GGAPMYGGGMVTTM 152

[Close]
BLAST of Lsi05G004940 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-42
Identity = 95/166 (57.23%), Postives = 114/166 (68.67%), Query Frame = 1 

Query: 2   ADSDNDSGGGYQKSPSPR---------EHDRLLPIANVGRIMKKALPGNAKISKDAKETV 61
           A +    GGG  +S SPR         E DR LPIAN+ RIMKKA+P N KI+KDAKETV
Sbjct: 4   APASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 63

Query: 62  QECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEG 121
           QECVSEFISF+T EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK+YLQ++RE+EG
Sbjct: 64  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEG 123

Query: 122 E-RTTLASRDSASAASAVNSAGVANSTFFDGG--GEFGGGMGMTMP 156
           + + T  S D +    A+   G ++S     G  G +  GMG   P
Sbjct: 124 DSKLTAKSSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQP 169

[Close]
BLAST of Lsi05G004940 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-41
Identity = 89/150 (59.33%), Postives = 105/150 (70.00%), Query Frame = 1 

Query: 9   GGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEAS 68
           GGG       RE DR LPIAN+ RIMKKA+P N KI+KDAKETVQECVSEFISF+T EAS
Sbjct: 27  GGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEAS 86

Query: 69  DKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASAASA 128
           DKC  EKRKTINGDDLLWAMATLGFEDY++PLK+YLQ++RE+EG+    A     S    
Sbjct: 87  DKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKD 146

Query: 129 VNSAGVANSTFFDGGGE---FGGGMGMTMP 156
           V  +   +S+   G G+   +  GMG   P
Sbjct: 147 VLGSHGGSSSSAQGMGQQAAYNQGMGYMQP 176

[Close]
BLAST of Lsi05G004940 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 4.4e-41
Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 1 

Query: 1   MADSDND-SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+ +  +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 114
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD 114

[Close]
BLAST of Lsi05G004940 vs. TrEMBL
Match: A0A0A0L4U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047800 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 2.8e-87
Identity = 170/186 (91.40%), Postives = 171/186 (91.94%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSASAASAVNSAGVANSTFFDGGGEFGG------GMGM--TMPPNVYGSNGPRWDGPGFT 179
           DSAS  SA NSA   NS FFDGGGEFGG      GMGM  TMPPNVYGSNGPRWDGPGF+
Sbjct: 121 DSAS--SAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFS 180

[Close]
BLAST of Lsi05G004940 vs. TrEMBL
Match: A0A022QLU9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022879mg PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.9e-52
Identity = 115/167 (68.86%), Postives = 129/167 (77.25%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS- 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK+YL ++REIEGE+T++A+ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVAAV 120

Query: 121 RDSASAASAVNSAGVANSTFFDGGGEFGGG---MGMTMPPNVYGSNG 164
           +D+A   SAV S G      ++GGG +GGG   MG      +YG  G
Sbjct: 121 KDAAGGGSAVTSGGGG----YNGGGIYGGGGPVMGYHHGGQMYGGGG 163

[Close]
BLAST of Lsi05G004940 vs. TrEMBL
Match: A0A022PN77_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021836mg PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.6e-52
Identity = 120/181 (66.30%), Postives = 134/181 (74.03%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTL-AS 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK+YL ++REIEGE+T++ A 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVSAV 120

Query: 121 RDSASAASAVNSAGVANSTFFDGGGEFGGG---MGMTMPPNVYGSNGPRWDGPG--FTTT 176
           +D+A   SAV S G      ++GGG +GGG   MG      +YG  G +  G G    TT
Sbjct: 121 KDAAGGGSAVTSGGGG----YNGGGIYGGGGPVMGYHHGGQMYGGGGFQHIGGGGNLDTT 177

[Close]
BLAST of Lsi05G004940 vs. TrEMBL
Match: A0A0S3S6N1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G201200 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.6e-51
Identity = 121/195 (62.05%), Postives = 135/195 (69.23%), Query Frame = 1 

Query: 1   MADSDNDSGG----GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           MADSDNDSGG    G     SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGTHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTT 120
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFRE+EGE+T 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTV 120

Query: 121 LA-SRDSASAASAVNSAGVANSTFFDGGGEFGGGMGMTMPPNVYGS------------NG 179
            A  +D+  A++A NSA  +        G +G G  M    +VYGS             G
Sbjct: 121 AARDKDAPPASNATNSAYES--------GSYGAGGIMMHQGHVYGSGGFHQVGGSVIKGG 180

[Close]
BLAST of Lsi05G004940 vs. TrEMBL
Match: A0A0L9VBC0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g096700 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.6e-51
Identity = 121/195 (62.05%), Postives = 135/195 (69.23%), Query Frame = 1 

Query: 1   MADSDNDSGG----GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           MADSDNDSGG    G     SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGTHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTT 120
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFRE+EGE+T 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTV 120

Query: 121 LA-SRDSASAASAVNSAGVANSTFFDGGGEFGGGMGMTMPPNVYGS------------NG 179
            A  +D+  A++A NSA  +        G +G G  M    +VYGS             G
Sbjct: 121 AARDKDAPPASNATNSAYES--------GSYGAGGIMMHQGHVYGSGGFHQVGGSVIKGG 180

[Close]
BLAST of Lsi05G004940 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-53
Identity = 119/194 (61.34%), Postives = 128/194 (65.98%), Query Frame = 1 

Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASAASAVNSAGVANSTFFDGGGEFGGGMGMT---------MPPNVYGSNGP 179
           RT L    +           V      DGGG +GGG GM             ++YG+ G 
Sbjct: 121 RTGLGRPQTGGEVGEHQRDAVG-----DGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGG 180

[Close]
BLAST of Lsi05G004940 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 195.7 bits (496), Expect = 2.5e-50
Identity = 105/155 (67.74%), Postives = 115/155 (74.19%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQK-SPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAASAVNSAGVANSTFFDGGGEFGGGMGMTM 155
           R              + S    G   +GGGM  TM
Sbjct: 121 RQGDKEGGGGGGGAGSGS---GGAPMYGGGMVTTM 152

[Close]
BLAST of Lsi05G004940 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-41
Identity = 77/96 (80.21%), Postives = 86/96 (89.58%), Query Frame = 1 

Query: 19  REHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKT 78
           +E DR LPIANVGRIMKK LPGN KISKDAKETVQECVSEFISFVTGEASDKC  EKRKT
Sbjct: 35  KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94

Query: 79  INGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGER 115
           INGDD++WA+ TLGFEDYV PLK+YL ++R+ EGE+
Sbjct: 95  INGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]
BLAST of Lsi05G004940 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 164.5 bits (415), Expect = 6.1e-41
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 1 

Query: 1   MADSDND-SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+ +  +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREI 111
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREV 111

[Close]
BLAST of Lsi05G004940 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 163.7 bits (413), Expect = 1.0e-40
Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 1 

Query: 6   NDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVT 65
           ++SGG    +S   RE DR LPIAN+ RIMK+ LP N KI+KDAKE VQECVSEFISFVT
Sbjct: 15  HESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVT 74

Query: 66  GEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 114
            EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+
Sbjct: 75  SEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD 123

[Close]
BLAST of Lsi05G004940 vs. NCBI nr
Match: gi|449461061|ref|XP_004148262.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 4.1e-87
Identity = 170/186 (91.40%), Postives = 171/186 (91.94%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSASAASAVNSAGVANSTFFDGGGEFGG------GMGM--TMPPNVYGSNGPRWDGPGFT 179
           DSAS  SA NSA   NS FFDGGGEFGG      GMGM  TMPPNVYGSNGPRWDGPGF+
Sbjct: 121 DSAS--SAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFS 180

[Close]
BLAST of Lsi05G004940 vs. NCBI nr
Match: gi|659096321|ref|XP_008449032.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 1.2e-86
Identity = 168/190 (88.42%), Postives = 171/190 (90.00%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 64  MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 123

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 124 SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 183

Query: 121 DSASAASAVNSAGVANSTFFDGGGEFGGGMG------------MTMPPNVYGSNGPRWDG 179
           DSA A+SA NSA   NS FFDGGGEFGGGMG            M MPPNVYGS+GPRWDG
Sbjct: 184 DSA-ASSAPNSAAAGNSGFFDGGGEFGGGMGMGMGMGMGMGMTMAMPPNVYGSDGPRWDG 243

[Close]
BLAST of Lsi05G004940 vs. NCBI nr
Match: gi|470110598|ref|XP_004291567.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 214.5 bits (545), Expect = 1.5e-52
Identity = 121/195 (62.05%), Postives = 136/195 (69.74%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPS---PREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVS 60
           MADSDNDSGGG+    S   PRE DRLLPIANV RIMKKALP NAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGGHNSPKSELSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTL 120
           EFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK+YLQRFRE+EGE++++
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKSSM 120

Query: 121 ASRDSASAASAVNSAGVANSTFFDGGGEFGGGMGM-----TMPPNVYGSNGPRWDGPG-- 179
           A+RD  S+   V          F+GGG   GG G+       P +VYG  G    G G  
Sbjct: 121 AARDKDSSGGVVG---------FEGGGAGAGGGGVYWQQQPQPGHVYGGGGFHQMGVGGV 180

[Close]
BLAST of Lsi05G004940 vs. NCBI nr
Match: gi|848896405|ref|XP_012848260.1| (PREDICTED: nuclear transcription factor Y subunit B-3 [Erythranthe guttata])

HSP 1 Score: 212.6 bits (540), Expect = 5.6e-52
Identity = 115/167 (68.86%), Postives = 129/167 (77.25%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS- 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK+YL ++REIEGE+T++A+ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVAAV 120

Query: 121 RDSASAASAVNSAGVANSTFFDGGGEFGGG---MGMTMPPNVYGSNG 164
           +D+A   SAV S G      ++GGG +GGG   MG      +YG  G
Sbjct: 121 KDAAGGGSAVTSGGGG----YNGGGIYGGGGPVMGYHHGGQMYGGGG 163

[Close]
BLAST of Lsi05G004940 vs. NCBI nr
Match: gi|848933557|ref|XP_012829444.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Erythranthe guttata])

HSP 1 Score: 211.8 bits (538), Expect = 9.5e-52
Identity = 120/181 (66.30%), Postives = 134/181 (74.03%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTL-AS 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK+YL ++REIEGE+T++ A 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVSAV 120

Query: 121 RDSASAASAVNSAGVANSTFFDGGGEFGGG---MGMTMPPNVYGSNGPRWDGPG--FTTT 176
           +D+A   SAV S G      ++GGG +GGG   MG      +YG  G +  G G    TT
Sbjct: 121 KDAAGGGSAVTSGGGG----YNGGGIYGGGGPVMGYHHGGQMYGGGGFQHIGGGGNLDTT 177

The following BLAST results are available for this feature:
BLAST of Lsi05G004940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB2_ARATH2.5e-5261.34Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB3_ARATH4.4e-4967.74Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2... [more]
NFYB_MAIZE1.0e-4257.23Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1[more]
NFYB3_ORYSJ1.2e-4159.33Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF... [more]
NFYB1_ARATH4.4e-4171.05Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1... [more]
BLAST of Lsi05G004940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4U4_CUCSA2.8e-8791.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047800 PE=4 SV=1[more]
A0A022QLU9_ERYGU3.9e-5268.86Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022879mg PE=4 SV=1[more]
A0A022PN77_ERYGU6.6e-5266.30Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021836mg PE=4 SV=1[more]
A0A0S3S6N1_PHAAN5.6e-5162.05Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G201200 PE=... [more]
A0A0L9VBC0_PHAAN5.6e-5162.05Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g096700 PE=4 SV=1[more]
BLAST of Lsi05G004940 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47640.11.4e-5361.34 nuclear factor Y, subunit B2[more]
AT4G14540.12.5e-5067.74 nuclear factor Y, subunit B3[more]
AT2G13570.11.6e-4180.21 nuclear factor Y, subunit B7[more]
AT2G38880.86.1e-4171.17 nuclear factor Y, subunit B1[more]
AT2G37060.11.0e-4072.48 nuclear factor Y, subunit B8[more]
BLAST of Lsi05G004940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461061|ref|XP_004148262.1|4.1e-8791.40PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis sativus][more]
gi|659096321|ref|XP_008449032.1|1.2e-8688.42PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo][more]
gi|470110598|ref|XP_004291567.1|1.5e-5262.05PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp... [more]
gi|848896405|ref|XP_012848260.1|5.6e-5268.86PREDICTED: nuclear transcription factor Y subunit B-3 [Erythranthe guttata][more]
gi|848933557|ref|XP_012829444.1|9.5e-5266.30PREDICTED: nuclear transcription factor Y subunit B-3-like [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
IPR003956Transcrpt_fac_NFYB/HAP3_CS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G004940.1Lsi05G004940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 55..71
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 24..88
score: 7.6
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 14..127
score: 1.1
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 22..127
score: 1.96
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 71..89
score: 2.2E-20coord: 90..108
score: 2.2E-20coord: 52..70
score: 2.2
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 1..154
score: 4.3
NoneNo IPR availablePANTHERPTHR11064:SF45SUBFAMILY NOT NAMEDcoord: 1..154
score: 4.3