Cla004460 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004460
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Nuclear transcription factor Y subunit B-3 (AHRD V1 ***- B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
Location	Chr10 : 4499746 .. 4500273 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

mRNA sequence

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

Coding sequence (CDS)

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

Protein sequence

MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR

Homology

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BLAST of Cla004460 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.8e-54
Identity = 117/191 (61.26%), Postives = 125/191 (65.45%), Query Frame = 1


Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMS---------MPPNVYGSNGPRWD 176
           RT L    +               DGGG +GGG GM             ++YG+ G   D
Sbjct: 121 RTGLGRPQTGGEVGE--HQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSD 180

[Close]

BLAST of Cla004460 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.6e-51
Identity = 103/152 (67.76%), Postives = 113/152 (74.34%), Query Frame = 1


Query: 1   MADSDNDSGGGYQK-SPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMSM 152
           R         G    +   G   +GGGM  +M
Sbjct: 121 RQGDKEGGGGGGGAGSGSGGAPMYGGGMVTTM 152

[Close]

BLAST of Cla004460 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.1e-43
Identity = 95/166 (57.23%), Postives = 112/166 (67.47%), Query Frame = 1


Query: 2   ADSDNDSGGGYQKSPSPR---------EHDRLLPIANVGRIMKKALPGNAKISKDAKETV 61
           A +    GGG  +S SPR         E DR LPIAN+ RIMKKA+P N KI+KDAKETV
Sbjct: 4   APASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 63

Query: 62  QECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEG 121
           QECVSEFISF+T EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK++LQ++RE+EG
Sbjct: 64  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEG 123

Query: 122 E-RTTLASRDSA---SAANPAGATNSTFFDGG--GEFGGGMGMSMP 153
           + + T  S D +    A    GA++S     G  G +  GMG   P
Sbjct: 124 DSKLTAKSSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQP 169

[Close]

BLAST of Cla004460 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 3.3e-41
Identity = 88/150 (58.67%), Postives = 107/150 (71.33%), Query Frame = 1


Query: 9   GGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEAS 68
           GGG       RE DR LPIAN+ RIMKKA+P N KI+KDAKETVQECVSEFISF+T EAS
Sbjct: 27  GGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEAS 86

Query: 69  DKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE-RTTLASRDSASAAN 128
           DKC  EKRKTINGDDLLWAMATLGFEDY++PLK++LQ++RE+EG+ + T  + D +   +
Sbjct: 87  DKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKD 146

Query: 129 PAGA--TNSTFFDGGGE---FGGGMGMSMP 153
             G+   +S+   G G+   +  GMG   P
Sbjct: 147 VLGSHGGSSSSAQGMGQQAAYNQGMGYMQP 176

[Close]

BLAST of Cla004460 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-40
Identity = 88/164 (53.66%), Postives = 102/164 (62.20%), Query Frame = 1


Query: 1   MADSDND-SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+ +  +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK++L R+RE+EG+      
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDN----- 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRW 164
                              G G+ G G        V G   P W
Sbjct: 121 ------------------KGSGKSGDGSNRDAGGGVSGEEMPSW 141

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BLAST of Cla004460 vs. TrEMBL
Match: A0A0A0L4U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047800 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.3e-88
Identity = 168/184 (91.30%), Postives = 171/184 (92.93%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA-SAANPAGATNSTFFDGGGEFGG------GMGM--SMPPNVYGSNGPRWDGPGFTTT 176
           DSA SAAN A A NS FFDGGGEFGG      GMGM  +MPPNVYGSNGPRWDGPGF+TT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

[Close]

BLAST of Cla004460 vs. TrEMBL
Match: I3TAX0_MEDTR (Nuclear transcription factor Y protein OS=Medicago truncatula GN=NF-YB12 PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 121/194 (62.37%), Postives = 138/194 (71.13%), Query Frame = 1


Query: 1   MADSDNDSGG-------GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           MADSDNDSGG        +    SPRE DR LPIANV RIMKKALP NAKISKDAKETVQ
Sbjct: 1   MADSDNDSGGPHGGGSNAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 120
           ECVSEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK +LQRFRE+EGE
Sbjct: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSM-PPNVYGS-----------NGP 176
           + T+ +RD  +       TNS++  GG  +GGG G+ M   +VYGS            GP
Sbjct: 121 K-TVGARDKDAPQGSGSVTNSSYESGG--YGGGGGVMMHQGHVYGSGGGGFHQVMGKGGP 180

[Close]

BLAST of Cla004460 vs. TrEMBL
Match: A0A022PN77_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021836mg PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.7e-53
Identity = 113/177 (63.84%), Postives = 130/177 (73.45%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK++L ++REIEGE+T++++ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVSAV 120

Query: 121 DSASAANPAGATNSTFFDGGGEFGGG---MGMSMPPNVYGSNGPRWDGPG--FTTTG 173
             A+    A  +    ++GGG +GGG   MG      +YG  G +  G G    TTG
Sbjct: 121 KDAAGGGSAVTSGGGGYNGGGIYGGGGPVMGYHHGGQMYGGGGFQHIGGGGNLDTTG 177

[Close]

BLAST of Cla004460 vs. TrEMBL
Match: A0A022QLU9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022879mg PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.0e-52
Identity = 109/163 (66.87%), Postives = 124/163 (76.07%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK++L ++REIEGE+T++A+ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVAAV 120

Query: 121 DSASAANPAGATNSTFFDGGGEFGGG---MGMSMPPNVYGSNG 161
             A+    A  +    ++GGG +GGG   MG      +YG  G
Sbjct: 121 KDAAGGGSAVTSGGGGYNGGGIYGGGGPVMGYHHGGQMYGGGG 163

[Close]

BLAST of Cla004460 vs. TrEMBL
Match: A0A0S3S6N1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G201200 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.0e-52
Identity = 121/192 (63.02%), Postives = 135/192 (70.31%), Query Frame = 1


Query: 1   MADSDNDSGG----GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           MADSDNDSGG    G     SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGTHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTT 120
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFRE+EGE+T 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTV 120

Query: 121 LA-SRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGS------------NGPRW 176
            A  +D+  A+N   ATNS +    G +G G  M    +VYGS             GP +
Sbjct: 121 AARDKDAPPASN---ATNSAY--ESGSYGAGGIMMHQGHVYGSGGFHQVGGSVIKGGPAY 180

[Close]

BLAST of Cla004460 vs. NCBI nr
Match: gi|449461061|ref|XP_004148262.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 4.7e-88
Identity = 168/184 (91.30%), Postives = 171/184 (92.93%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA-SAANPAGATNSTFFDGGGEFGG------GMGM--SMPPNVYGSNGPRWDGPGFTTT 176
           DSA SAAN A A NS FFDGGGEFGG      GMGM  +MPPNVYGSNGPRWDGPGF+TT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

[Close]

BLAST of Cla004460 vs. NCBI nr
Match: gi|659096321|ref|XP_008449032.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 1.4e-87
Identity = 166/189 (87.83%), Postives = 170/189 (89.95%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 64  MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 123

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 124 SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 183

Query: 121 DSA--SAANPAGATNSTFFDGGGEFGGGMG------------MSMPPNVYGSNGPRWDGP 176
           DSA  SA N A A NS FFDGGGEFGGGMG            M+MPPNVYGS+GPRWDGP
Sbjct: 184 DSAASSAPNSAAAGNSGFFDGGGEFGGGMGMGMGMGMGMGMTMAMPPNVYGSDGPRWDGP 243

[Close]

BLAST of Cla004460 vs. NCBI nr
Match: gi|470110598|ref|XP_004291567.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 220.3 bits (560), Expect = 2.6e-54
Identity = 120/192 (62.50%), Postives = 136/192 (70.83%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPS---PREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVS 60
           MADSDNDSGGG+    S   PRE DRLLPIANV RIMKKALP NAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGGHNSPKSELSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTL 120
           EFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK++LQRFRE+EGE++++
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKSSM 120

Query: 121 ASRDSASAANPAGATNSTFFDGGGEFGGGMGM-----SMPPNVYGSNGPRWDGPG----- 176
           A+RD  S+    G      F+GGG   GG G+       P +VYG  G    G G     
Sbjct: 121 AARDKDSSGGVVG------FEGGGAGAGGGGVYWQQQPQPGHVYGGGGFHQMGVGGVGIG 180

[Close]

BLAST of Cla004460 vs. NCBI nr
Match: gi|922379626|ref|XP_013460047.1| (nuclear transcription factor Y protein [Medicago truncatula])

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-53
Identity = 121/194 (62.37%), Postives = 138/194 (71.13%), Query Frame = 1


Query: 1   MADSDNDSGG-------GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           MADSDNDSGG        +    SPRE DR LPIANV RIMKKALP NAKISKDAKETVQ
Sbjct: 1   MADSDNDSGGPHGGGSNAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 120
           ECVSEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK +LQRFRE+EGE
Sbjct: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSM-PPNVYGS-----------NGP 176
           + T+ +RD  +       TNS++  GG  +GGG G+ M   +VYGS            GP
Sbjct: 121 K-TVGARDKDAPQGSGSVTNSSYESGG--YGGGGGVMMHQGHVYGSGGGGFHQVMGKGGP 180

[Close]

BLAST of Cla004460 vs. NCBI nr
Match: gi|604297411|gb|EYU17642.1| (hypothetical protein MIMGU_mgv1a021836mg [Erythranthe guttata])

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 113/177 (63.84%), Postives = 130/177 (73.45%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK++L ++REIEGE+T++++ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVSAV 120

Query: 121 DSASAANPAGATNSTFFDGGGEFGGG---MGMSMPPNVYGSNGPRWDGPG--FTTTG 173
             A+    A  +    ++GGG +GGG   MG      +YG  G +  G G    TTG
Sbjct: 121 KDAAGGGSAVTSGGGGYNGGGIYGGGGPVMGYHHGGQMYGGGGFQHIGGGGNLDTTG 177

The following BLAST results are available for this feature:

BLAST of Cla004460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB2_ARATH	5.8e-54	61.26	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]
NFYB3_ARATH	4.6e-51	67.76	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2...	[more]
NFYB_MAIZE	6.1e-43	57.23	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]
NFYB3_ORYSJ	3.3e-41	58.67	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]
NFYB1_ARATH	1.3e-40	53.66	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1...	[more]

BLAST of Cla004460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4U4_CUCSA	3.3e-88	91.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047800 PE=4 SV=1	[more]
I3TAX0_MEDTR	1.2e-53	62.37	Nuclear transcription factor Y protein OS=Medicago truncatula GN=NF-YB12 PE=2 SV...	[more]
A0A022PN77_ERYGU	7.7e-53	63.84	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021836mg PE=4 SV=1	[more]
A0A022QLU9_ERYGU	1.0e-52	66.87	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022879mg PE=4 SV=1	[more]
A0A0S3S6N1_PHAAN	1.0e-52	63.02	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G201200 PE=...	[more]

BLAST of Cla004460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461061\|ref\|XP_004148262.1\|	4.7e-88	91.30	PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis sativus]	[more]
gi\|659096321\|ref\|XP_008449032.1\|	1.4e-87	87.83	PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo]	[more]
gi\|470110598\|ref\|XP_004291567.1\|	2.6e-54	62.50	PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp...	[more]
gi\|922379626\|ref\|XP_013460047.1\|	1.7e-53	62.37	nuclear transcription factor Y protein [Medicago truncatula]	[more]
gi\|604297411\|gb\|EYU17642.1\|	1.1e-52	63.84	hypothetical protein MIMGU_mgv1a021836mg [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048574	long-day photoperiodism, flowering
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003712	transcription cofactor activity
molecular_function	GO:0044212	transcription regulatory region DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU30420	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU58801	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004460	Cla004460.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU30420	WMU30420	transcribed_cluster
WMU58801	WMU58801	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 55..71 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 24..88 score: 7.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 14..126 score: 6.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 22..123 score: 7.27
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 52..70 score: 4.2E-20coord: 71..89 score: 4.2E-20coord: 90..108 score: 4.2
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..151 score: 9.4
None	No IPR available	PANTHER	PTHR11064:SF45	SUBFAMILY NOT NAMED	coord: 1..151 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004460	Cla97C10G188720	Watermelon (97103) v2	wmwmbB057
Cla004460	Csa3G047800	Cucumber (Chinese Long) v2	cuwmB201
Cla004460	MELO3C014103	Melon (DHL92) v3.5.1	mewmB447
Cla004460	ClCG10G004280	Watermelon (Charleston Gray)	wcgwmB057
Cla004460	CSPI03G04080	Wild cucumber (PI 183967)	cpiwmB201
Cla004460	Cucsa.042000	Cucumber (Gy14) v1	cgywmB017
Cla004460	CmaCh06G006780	Cucurbita maxima (Rimu)	cmawmB783
Cla004460	CmaCh16G009650	Cucurbita maxima (Rimu)	cmawmB294
Cla004460	CmoCh06G006870	Cucurbita moschata (Rifu)	cmowmB776
Cla004460	CmoCh16G010060	Cucurbita moschata (Rifu)	cmowmB286
Cla004460	Lsi05G004940	Bottle gourd (USVL1VR-Ls)	lsiwmB351
Cla004460	Cp4.1LG08g08290	Cucurbita pepo (Zucchini)	cpewmB834
Cla004460	CsGy3G004080	Cucumber (Gy14) v2	cgybwmB189
Cla004460	MELO3C014103.2	Melon (DHL92) v3.6.1	medwmB439
Cla004460	CsaV3_3G004080	Cucumber (Chinese Long) v3	cucwmB210
Cla004460	Bhi11G000359	Wax gourd	wgowmB023

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004460	Silver-seed gourd	carwmB0010
Cla004460	Silver-seed gourd	carwmB0331
Cla004460	Silver-seed gourd	carwmB0586
Cla004460	Watermelon (97103) v2	wmwmbB052
Cla004460	Cucurbita maxima (Rimu)	cmawmB512
Cla004460	Cucurbita moschata (Rifu)	cmowmB504
Cla004460	Wild cucumber (PI 183967)	cpiwmB466
Cla004460	Cucurbita pepo (Zucchini)	cpewmB203
Cla004460	Cucurbita pepo (Zucchini)	cpewmB278
Cla004460	Bottle gourd (USVL1VR-Ls)	lsiwmB050