ClCG10G004280 (gene) Watermelon (Charleston Gray)

Overview
NameClCG10G004280
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionNuclear transcription factor Y subunit B-3
LocationCG_Chr10 : 5486885 .. 5487412 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

mRNA sequence

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

Coding sequence (CDS)

ATGGCTGACTCCGACAACGATTCCGGCGGCGGCTACCAGAAATCTCCCTCTCCACGTGAGCACGACAGACTCCTTCCCATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTTATCAGCTTCGTCACCGGCGAAGCCTCCGACAAGTGCCACAACGAGAAGCGTAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACTTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTCATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCGCCGCCAACCCCGCCGGAGCTACGAATAGTACGTTTTTCGACGGCGGTGGGGAATTTGGGGGTGGGATGGGGATGTCCATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG

Protein sequence

MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRWDGPGFTTTGRPR
Homology
[Close]
BLAST of ClCG10G004280 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.8e-54
Identity = 117/191 (61.26%), Postives = 125/191 (65.45%), Query Frame = 1 

Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMS---------MPPNVYGSNGPRWD 176
           RT L    +               DGGG +GGG GM             ++YG+ G   D
Sbjct: 121 RTGLGRPQTGGEVGE--HQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSD 180

[Close]
BLAST of ClCG10G004280 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.6e-51
Identity = 103/152 (67.76%), Postives = 113/152 (74.34%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQK-SPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMSM 152
           R         G    +   G   +GGGM  +M
Sbjct: 121 RQGDKEGGGGGGGAGSGSGGAPMYGGGMVTTM 152

[Close]
BLAST of ClCG10G004280 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.1e-43
Identity = 95/166 (57.23%), Postives = 112/166 (67.47%), Query Frame = 1 

Query: 2   ADSDNDSGGGYQKSPSPR---------EHDRLLPIANVGRIMKKALPGNAKISKDAKETV 61
           A +    GGG  +S SPR         E DR LPIAN+ RIMKKA+P N KI+KDAKETV
Sbjct: 4   APASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 63

Query: 62  QECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEG 121
           QECVSEFISF+T EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK++LQ++RE+EG
Sbjct: 64  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEG 123

Query: 122 E-RTTLASRDSA---SAANPAGATNSTFFDGG--GEFGGGMGMSMP 153
           + + T  S D +    A    GA++S     G  G +  GMG   P
Sbjct: 124 DSKLTAKSSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQP 169

[Close]
BLAST of ClCG10G004280 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 3.3e-41
Identity = 88/150 (58.67%), Postives = 107/150 (71.33%), Query Frame = 1 

Query: 9   GGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEAS 68
           GGG       RE DR LPIAN+ RIMKKA+P N KI+KDAKETVQECVSEFISF+T EAS
Sbjct: 27  GGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEAS 86

Query: 69  DKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE-RTTLASRDSASAAN 128
           DKC  EKRKTINGDDLLWAMATLGFEDY++PLK++LQ++RE+EG+ + T  + D +   +
Sbjct: 87  DKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKD 146

Query: 129 PAGA--TNSTFFDGGGE---FGGGMGMSMP 153
             G+   +S+   G G+   +  GMG   P
Sbjct: 147 VLGSHGGSSSSAQGMGQQAAYNQGMGYMQP 176

[Close]
BLAST of ClCG10G004280 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-40
Identity = 88/164 (53.66%), Postives = 102/164 (62.20%), Query Frame = 1 

Query: 1   MADSDND-SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+ +  +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK++L R+RE+EG+      
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDN----- 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGSNGPRW 164
                              G G+ G G        V G   P W
Sbjct: 121 ------------------KGSGKSGDGSNRDAGGGVSGEEMPSW 141

[Close]
BLAST of ClCG10G004280 vs. TrEMBL
Match: A0A0A0L4U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047800 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.3e-88
Identity = 168/184 (91.30%), Postives = 171/184 (92.93%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA-SAANPAGATNSTFFDGGGEFGG------GMGM--SMPPNVYGSNGPRWDGPGFTTT 176
           DSA SAAN A A NS FFDGGGEFGG      GMGM  +MPPNVYGSNGPRWDGPGF+TT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

[Close]
BLAST of ClCG10G004280 vs. TrEMBL
Match: I3TAX0_MEDTR (Nuclear transcription factor Y protein OS=Medicago truncatula GN=NF-YB12 PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 121/194 (62.37%), Postives = 138/194 (71.13%), Query Frame = 1 

Query: 1   MADSDNDSGG-------GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           MADSDNDSGG        +    SPRE DR LPIANV RIMKKALP NAKISKDAKETVQ
Sbjct: 1   MADSDNDSGGPHGGGSNAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 120
           ECVSEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK +LQRFRE+EGE
Sbjct: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSM-PPNVYGS-----------NGP 176
           + T+ +RD  +       TNS++  GG  +GGG G+ M   +VYGS            GP
Sbjct: 121 K-TVGARDKDAPQGSGSVTNSSYESGG--YGGGGGVMMHQGHVYGSGGGGFHQVMGKGGP 180

[Close]
BLAST of ClCG10G004280 vs. TrEMBL
Match: A0A022PN77_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021836mg PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.7e-53
Identity = 113/177 (63.84%), Postives = 130/177 (73.45%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK++L ++REIEGE+T++++ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVSAV 120

Query: 121 DSASAANPAGATNSTFFDGGGEFGGG---MGMSMPPNVYGSNGPRWDGPG--FTTTG 173
             A+    A  +    ++GGG +GGG   MG      +YG  G +  G G    TTG
Sbjct: 121 KDAAGGGSAVTSGGGGYNGGGIYGGGGPVMGYHHGGQMYGGGGFQHIGGGGNLDTTG 177

[Close]
BLAST of ClCG10G004280 vs. TrEMBL
Match: A0A022QLU9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022879mg PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.0e-52
Identity = 109/163 (66.87%), Postives = 124/163 (76.07%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK++L ++REIEGE+T++A+ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVAAV 120

Query: 121 DSASAANPAGATNSTFFDGGGEFGGG---MGMSMPPNVYGSNG 161
             A+    A  +    ++GGG +GGG   MG      +YG  G
Sbjct: 121 KDAAGGGSAVTSGGGGYNGGGIYGGGGPVMGYHHGGQMYGGGG 163

[Close]
BLAST of ClCG10G004280 vs. TrEMBL
Match: A0A0S3S6N1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G201200 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.0e-52
Identity = 121/192 (63.02%), Postives = 135/192 (70.31%), Query Frame = 1 

Query: 1   MADSDNDSGG----GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           MADSDNDSGG    G     SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MADSDNDSGGTHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTT 120
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFRE+EGE+T 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTV 120

Query: 121 LA-SRDSASAANPAGATNSTFFDGGGEFGGGMGMSMPPNVYGS------------NGPRW 176
            A  +D+  A+N   ATNS +    G +G G  M    +VYGS             GP +
Sbjct: 121 AARDKDAPPASN---ATNSAY--ESGSYGAGGIMMHQGHVYGSGGFHQVGGSVIKGGPAY 180

[Close]
BLAST of ClCG10G004280 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 211.8 bits (538), Expect = 3.3e-55
Identity = 117/191 (61.26%), Postives = 125/191 (65.45%), Query Frame = 1 

Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMS---------MPPNVYGSNGPRWD 176
           RT L    +               DGGG +GGG GM             ++YG+ G   D
Sbjct: 121 RTGLGRPQTGGEVGE--HQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGSD 180

[Close]
BLAST of ClCG10G004280 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 202.2 bits (513), Expect = 2.6e-52
Identity = 103/152 (67.76%), Postives = 113/152 (74.34%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQK-SPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK++LQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASAANPAGATNSTFFDGGGEFGGGMGMSM 152
           R         G    +   G   +GGGM  +M
Sbjct: 121 RQGDKEGGGGGGGAGSGSGGAPMYGGGMVTTM 152

[Close]
BLAST of ClCG10G004280 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-41
Identity = 90/175 (51.43%), Postives = 108/175 (61.71%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQ---------KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKET 60
           MA+S    GGG           +S + RE DR LPIAN+ RIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIE 120
           +QECVSEFISFVT EASDKC  EKRKTINGDDLLWAMATLGFEDY+DPLK++L R+RE+E
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GERTTLASRDSASAANPAGATNSTFFD--------GGGEFGGGMGMSMPPNVYGS 159
           G+         +SA      +  + F           G +G   G +M   + G+
Sbjct: 121 GDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQGPYGNSQGSNMMVQMPGT 175

[Close]
BLAST of ClCG10G004280 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-40
Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 1 

Query: 19  REHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKT 78
           +E DR LPIANVGRIMKK LPGN KISKDAKETVQECVSEFISFVTGEASDKC  EKRKT
Sbjct: 35  KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94

Query: 79  INGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGER 115
           INGDD++WA+ TLGFEDYV PLK++L ++R+ EGE+
Sbjct: 95  INGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130

[Close]
BLAST of ClCG10G004280 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 162.2 bits (409), Expect = 3.0e-40
Identity = 78/111 (70.27%), Postives = 90/111 (81.08%), Query Frame = 1 

Query: 1   MADSDND-SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+ +  +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREI 111
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK++L R+RE+
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREV 111

[Close]
BLAST of ClCG10G004280 vs. NCBI nr
Match: gi|449461061|ref|XP_004148262.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 4.7e-88
Identity = 168/184 (91.30%), Postives = 171/184 (92.93%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSA-SAANPAGATNSTFFDGGGEFGG------GMGM--SMPPNVYGSNGPRWDGPGFTTT 176
           DSA SAAN A A NS FFDGGGEFGG      GMGM  +MPPNVYGSNGPRWDGPGF+TT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

[Close]
BLAST of ClCG10G004280 vs. NCBI nr
Match: gi|659096321|ref|XP_008449032.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 1.4e-87
Identity = 166/189 (87.83%), Postives = 170/189 (89.95%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 64  MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 123

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKL+LQRFREIEGERTTLASR
Sbjct: 124 SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 183

Query: 121 DSA--SAANPAGATNSTFFDGGGEFGGGMG------------MSMPPNVYGSNGPRWDGP 176
           DSA  SA N A A NS FFDGGGEFGGGMG            M+MPPNVYGS+GPRWDGP
Sbjct: 184 DSAASSAPNSAAAGNSGFFDGGGEFGGGMGMGMGMGMGMGMTMAMPPNVYGSDGPRWDGP 243

[Close]
BLAST of ClCG10G004280 vs. NCBI nr
Match: gi|470110598|ref|XP_004291567.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 220.3 bits (560), Expect = 2.6e-54
Identity = 120/192 (62.50%), Postives = 136/192 (70.83%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPS---PREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVS 60
           MADSDNDSGGG+    S   PRE DRLLPIANV RIMKKALP NAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGGHNSPKSELSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTL 120
           EFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK++LQRFRE+EGE++++
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKSSM 120

Query: 121 ASRDSASAANPAGATNSTFFDGGGEFGGGMGM-----SMPPNVYGSNGPRWDGPG----- 176
           A+RD  S+    G      F+GGG   GG G+       P +VYG  G    G G     
Sbjct: 121 AARDKDSSGGVVG------FEGGGAGAGGGGVYWQQQPQPGHVYGGGGFHQMGVGGVGIG 180

[Close]
BLAST of ClCG10G004280 vs. NCBI nr
Match: gi|922379626|ref|XP_013460047.1| (nuclear transcription factor Y protein [Medicago truncatula])

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-53
Identity = 121/194 (62.37%), Postives = 138/194 (71.13%), Query Frame = 1 

Query: 1   MADSDNDSGG-------GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           MADSDNDSGG        +    SPRE DR LPIANV RIMKKALP NAKISKDAKETVQ
Sbjct: 1   MADSDNDSGGPHGGGSNAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGE 120
           ECVSEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK +LQRFRE+EGE
Sbjct: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGE 120

Query: 121 RTTLASRDSASAANPAGATNSTFFDGGGEFGGGMGMSM-PPNVYGS-----------NGP 176
           + T+ +RD  +       TNS++  GG  +GGG G+ M   +VYGS            GP
Sbjct: 121 K-TVGARDKDAPQGSGSVTNSSYESGG--YGGGGGVMMHQGHVYGSGGGGFHQVMGKGGP 180

[Close]
BLAST of ClCG10G004280 vs. NCBI nr
Match: gi|604297411|gb|EYU17642.1| (hypothetical protein MIMGU_mgv1a021836mg [Erythranthe guttata])

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 113/177 (63.84%), Postives = 130/177 (73.45%), Query Frame = 1 

Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLHLQRFREIEGERTTLASR 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK++L ++REIEGE+T++++ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVSAV 120

Query: 121 DSASAANPAGATNSTFFDGGGEFGGG---MGMSMPPNVYGSNGPRWDGPG--FTTTG 173
             A+    A  +    ++GGG +GGG   MG      +YG  G +  G G    TTG
Sbjct: 121 KDAAGGGSAVTSGGGGYNGGGIYGGGGPVMGYHHGGQMYGGGGFQHIGGGGNLDTTG 177

The following BLAST results are available for this feature:
BLAST of ClCG10G004280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYB2_ARATH5.8e-5461.26Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2... [more]
NFYB3_ARATH4.6e-5167.76Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2... [more]
NFYB_MAIZE6.1e-4357.23Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1[more]
NFYB3_ORYSJ3.3e-4158.67Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF... [more]
NFYB1_ARATH1.3e-4053.66Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1... [more]
BLAST of ClCG10G004280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4U4_CUCSA3.3e-8891.30Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047800 PE=4 SV=1[more]
I3TAX0_MEDTR1.2e-5362.37Nuclear transcription factor Y protein OS=Medicago truncatula GN=NF-YB12 PE=2 SV... [more]
A0A022PN77_ERYGU7.7e-5363.84Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021836mg PE=4 SV=1[more]
A0A022QLU9_ERYGU1.0e-5266.87Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022879mg PE=4 SV=1[more]
A0A0S3S6N1_PHAAN1.0e-5263.02Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G201200 PE=... [more]
BLAST of ClCG10G004280 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47640.13.3e-5561.26 nuclear factor Y, subunit B2[more]
AT4G14540.12.6e-5267.76 nuclear factor Y, subunit B3[more]
AT3G53340.11.6e-4151.43 nuclear factor Y, subunit B10[more]
AT2G13570.12.3e-4079.17 nuclear factor Y, subunit B7[more]
AT2G38880.83.0e-4070.27 nuclear factor Y, subunit B1[more]
BLAST of ClCG10G004280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461061|ref|XP_004148262.1|4.7e-8891.30PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis sativus][more]
gi|659096321|ref|XP_008449032.1|1.4e-8787.83PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo][more]
gi|470110598|ref|XP_004291567.1|2.6e-5462.50PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp... [more]
gi|922379626|ref|XP_013460047.1|1.7e-5362.37nuclear transcription factor Y protein [Medicago truncatula][more]
gi|604297411|gb|EYU17642.1|1.1e-5263.84hypothetical protein MIMGU_mgv1a021836mg [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG10G004280.1ClCG10G004280.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 55..71
scor
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 24..88
score: 7.3
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 14..126
score: 6.2
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 22..123
score: 7.27
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 52..70
score: 4.2E-20coord: 71..89
score: 4.2E-20coord: 90..108
score: 4.2
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 1..151
score: 9.4
NoneNo IPR availablePANTHERPTHR11064:SF45SUBFAMILY NOT NAMEDcoord: 1..151
score: 9.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG10G004280Csa3G047800Cucumber (Chinese Long) v2cuwcgB189
ClCG10G004280MELO3C014103Melon (DHL92) v3.5.1mewcgB415
ClCG10G004280Cla004460Watermelon (97103) v1wcgwmB057
ClCG10G004280Cla97C10G188720Watermelon (97103) v2wcgwmbB038
ClCG10G004280Bhi11G000359Wax gourdwcgwgoB080
ClCG10G004280CSPI03G04080Wild cucumber (PI 183967)cpiwcgB190
ClCG10G004280Cucsa.042000Cucumber (Gy14) v1cgywcgB018
ClCG10G004280CmaCh16G009650Cucurbita maxima (Rimu)cmawcgB285
ClCG10G004280CmaCh06G006780Cucurbita maxima (Rimu)cmawcgB727
ClCG10G004280CmoCh16G010060Cucurbita moschata (Rifu)cmowcgB277
ClCG10G004280CmoCh06G006870Cucurbita moschata (Rifu)cmowcgB730
ClCG10G004280Lsi05G004940Bottle gourd (USVL1VR-Ls)lsiwcgB318
ClCG10G004280Cp4.1LG08g08290Cucurbita pepo (Zucchini)cpewcgB766
ClCG10G004280CsGy3G004080Cucumber (Gy14) v2cgybwcgB174
ClCG10G004280MELO3C014103.2Melon (DHL92) v3.6.1medwcgB401
ClCG10G004280CsaV3_3G004080Cucumber (Chinese Long) v3cucwcgB194
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG10G004280Cucurbita pepo (Zucchini)cpewcgB194
ClCG10G004280Cucurbita pepo (Zucchini)cpewcgB249
ClCG10G004280Bottle gourd (USVL1VR-Ls)lsiwcgB038
ClCG10G004280Silver-seed gourdcarwcgB0008
ClCG10G004280Silver-seed gourdcarwcgB0334
ClCG10G004280Silver-seed gourdcarwcgB0572
ClCG10G004280Watermelon (Charleston Gray)wcgwcgB047
ClCG10G004280Cucurbita maxima (Rimu)cmawcgB730
ClCG10G004280Cucurbita moschata (Rifu)cmowcgB280
ClCG10G004280Cucurbita moschata (Rifu)cmowcgB475
ClCG10G004280Cucurbita moschata (Rifu)cmowcgB733
ClCG10G004280Wild cucumber (PI 183967)cpiwcgB448
ClCG10G004280Watermelon (97103) v1wcgwmB079