Csa3G047800.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G047800.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Nuclear transcription factor Y subunit B-3; contains IPR003957 (Transcription factor, CBFA/NFYB, DNA topoisomerase), IPR009072 (Histone-fold)
Location	Chr3 : 3332696 .. 3333441 (+)
Sequence length	555

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAGATATTGCATTTTAATTTGGTTAAATTAAATTTTGTTGTTCAATGATAGCAACTTGGCAACTCTCCCATTCCCATCCCCTTTACAAACATCTCTCTATCTCTCTCTCTCTCTCACACACACACACACACACATTTCACTTCCACATCCCCTAATTTCACAAACCCTAATTCCTCTTCCCCTCTTCCATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCAAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAG

mRNA sequence

ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCAAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAG

Coding sequence (CDS)

ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCAAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAG

Protein sequence

MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTTGRPR*

Homology

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BLAST of Csa3G047800.1 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-54
Identity = 118/192 (61.46%), Postives = 125/192 (65.10%), Query Frame = 1


Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPN-VYGSNGPRW 180
           RT L    +                DGGG +GG GG             N +YG+ G   
Sbjct: 121 RTGLGRPQTGGEVGEHQ---RDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGS 180

Query: 181 DGPGFSTTGRPR 185
           D  G + +GR R
Sbjct: 181 DSGGGAASGRTR 189

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BLAST of Csa3G047800.1 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.9e-53
Identity = 112/162 (69.14%), Postives = 120/162 (74.07%), Query Frame = 1


Query: 1   MADSDNDSGGGYQK-SPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASSAANSAAAGNSGFFDGGGEFGGAGGSGM-GMGMTTTM 161
           R            G  G   GGG   G+GG+ M G GM TTM
Sbjct: 121 RQGDKE-------GGGG---GGGAGSGSGGAPMYGGGMVTTM 152

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BLAST of Csa3G047800.1 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-43
Identity = 94/164 (57.32%), Postives = 108/164 (65.85%), Query Frame = 1


Query: 2   ADSDNDSGGGYQKSPSPR---------EHDRLLPIANVGRIMKKALPGNAKISKDAKETV 61
           A +    GGG  +S SPR         E DR LPIAN+ RIMKKA+P N KI+KDAKETV
Sbjct: 4   APASPGGGGGSHESGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETV 63

Query: 62  QECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEG 121
           QECVSEFISF+T EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK+YLQ++RE+EG
Sbjct: 64  QECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEG 123

Query: 122 ERTTLASRDSASSAANSAAAGNSGFFDGGGE-FGGAGGSGMGMG 156
           +    A   S+  +    A G+ G      E  G  G    GMG
Sbjct: 124 DSKLTAK--SSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMG 165

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BLAST of Csa3G047800.1 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 175.3 bits (443), Expect = 6.4e-43
Identity = 90/147 (61.22%), Postives = 101/147 (68.71%), Query Frame = 1


Query: 9   GGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEAS 68
           GGG       RE DR LPIAN+ RIMKKA+P N KI+KDAKETVQECVSEFISF+T EAS
Sbjct: 27  GGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEAS 86

Query: 69  DKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASSAAN 128
           DKC  EKRKTINGDDLLWAMATLGFEDY++PLK+YLQ++RE+EG+           S   
Sbjct: 87  DKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD-----------SKLT 146

Query: 129 SAAAGNSGFFDGGGEFGGAGGSGMGMG 156
           + A   S   D  G  GG+  S  GMG
Sbjct: 147 AKAGDGSVKKDVLGSHGGSSSSAQGMG 162

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BLAST of Csa3G047800.1 vs. Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 9.2e-42
Identity = 87/137 (63.50%), Postives = 100/137 (72.99%), Query Frame = 1


Query: 1   MADSDND-SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+ +  +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+     S
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNK--GS 120

Query: 121 RDSASSAANSAAAGNSG 137
             S   +   A  G SG
Sbjct: 121 GKSGDGSNRDAGGGVSG 135

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BLAST of Csa3G047800.1 vs. TrEMBL
Match: A0A0A0L4U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047800 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.5e-102
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180
           DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

Query: 181 GRPR 185
           GRPR
Sbjct: 181 GRPR 184

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BLAST of Csa3G047800.1 vs. TrEMBL
Match: A0A022QLU9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022879mg PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.3e-54
Identity = 120/202 (59.41%), Postives = 137/202 (67.82%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK+YL ++REIEGE+T++A+ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVAAV 120

Query: 121 DSASSAANSAAAGNSGF-----FDGGGE----------FGGAGG---SGMGMGMTTTMPP 180
             A+   ++  +G  G+     + GGG           +GG GG    G G  + TT   
Sbjct: 121 KDAAGGGSAVTSGGGGYNGGGIYGGGGPVMGYHHGGQMYGGGGGFQHIGGGGNLDTTGSS 180

Query: 181 NVYGSNGPRWDGPGFSTTGRPR 185
             YG       G G +TTGR R
Sbjct: 181 GSYGGG----SGGGGATTGRQR 198

[Close]

BLAST of Csa3G047800.1 vs. TrEMBL
Match: A0A022PN77_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021836mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.3e-54
Identity = 119/202 (58.91%), Postives = 137/202 (67.82%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGG    + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGHSNSNASSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK+YL ++REIEGE+T++++ 
Sbjct: 61  SFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLAKYREIEGEKTSVSAV 120

Query: 121 DSASSAANSAAAGNSGFFDGGGEFGGA-------------GGSGM-----GMGMTTTMPP 180
             A+   ++  +G  G ++GGG +GG              GG G      G  + TT   
Sbjct: 121 KDAAGGGSAVTSGGGG-YNGGGIYGGGGPVMGYHHGGQMYGGGGFQHIGGGGNLDTTGSS 180

Query: 181 NVYGSNGPRWDGPGFSTTGRPR 185
             YG       G G +TTGR R
Sbjct: 181 GSYGGG----SGGGGATTGRQR 197

[Close]

BLAST of Csa3G047800.1 vs. TrEMBL
Match: W9QFK9_9ROSA (Nuclear transcription factor Y subunit B-3 OS=Morus notabilis GN=L484_018224 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.6e-53
Identity = 130/212 (61.32%), Postives = 141/212 (66.51%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSP-------SPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           MADSDNDSGGG   +        S RE DRLLPIANV RIMKKALP NAKISKDAKETVQ
Sbjct: 1   MADSDNDSGGGGNNNRGDANSEMSLREQDRLLPIANVSRIMKKALPANAKISKDAKETVQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFRE EGE
Sbjct: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFRETEGE 120

Query: 121 R---TTLA-SRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGS-- 180
           +   TT+A  +D A+ +  +  AG  GF DGG   GG G  GM M M      +VYGS  
Sbjct: 121 KGGATTVAREKDVAAGSVGNGGAGGVGFGDGGA--GGGGVYGMVM-MGQQHQGHVYGSGG 180

Query: 181 ---------------NGPRWDGPGFSTTGRPR 185
                          NGP    PG S  GRPR
Sbjct: 181 FHQLGVGSGGSGLAKNGPGHISPG-SNLGRPR 208

[Close]

BLAST of Csa3G047800.1 vs. TrEMBL
Match: B9IH15_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s00780g PE=4 SV=2)

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-53
Identity = 120/205 (58.54%), Postives = 136/205 (66.34%), Query Frame = 1


Query: 1   MADSDNDSGG------GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQE 60
           MADSDN+SG        Y    SPRE DRLLPIANV RIMKKALP NAKISKDAKETVQE
Sbjct: 1   MADSDNESGEQNNSNTNYSTETSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQE 60

Query: 61  CVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGER 120
           CVSEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ+FRE+EGE+
Sbjct: 61  CVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKFREMEGEK 120

Query: 121 TT----LASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTM---------- 180
           T     +   D     A      NSG  + GG FGG GG  M +GM ++M          
Sbjct: 121 TAAMGIVRQGDQRDGTAGDGGVVNSG--NPGGGFGGGGGGNMYVGMQSSMAMMGHHHYQH 180

Query: 181 --PPNVYGSNGPRWDGPGFSTTGRP 184
             P N+YG  G        +++GRP
Sbjct: 181 RHPGNMYGPGGG-------ASSGRP 196

[Close]

BLAST of Csa3G047800.1 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-55
Identity = 118/192 (61.46%), Postives = 125/192 (65.10%), Query Frame = 1


Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPN-VYGSNGPRW 180
           RT L    +                DGGG +GG GG             N +YG+ G   
Sbjct: 121 RTGLGRPQTGGEVGEHQ---RDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGS 180

Query: 181 DGPGFSTTGRPR 185
           D  G + +GR R
Sbjct: 181 DSGGGAASGRTR 189

[Close]

BLAST of Csa3G047800.1 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3)

HSP 1 Score: 208.0 bits (528), Expect = 5.0e-54
Identity = 112/162 (69.14%), Postives = 120/162 (74.07%), Query Frame = 1


Query: 1   MADSDNDSGGGYQK-SPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASSAANSAAAGNSGFFDGGGEFGGAGGSGM-GMGMTTTM 161
           R            G  G   GGG   G+GG+ M G GM TTM
Sbjct: 121 RQGDKE-------GGGG---GGGAGSGSGGAPMYGGGMVTTM 152

[Close]

BLAST of Csa3G047800.1 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 171.4 bits (433), Expect = 5.2e-43
Identity = 95/174 (54.60%), Postives = 109/174 (62.64%), Query Frame = 1


Query: 1   MADSDNDSGGGYQ---------KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKET 60
           MA+S    GGG           +S + RE DR LPIAN+ RIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIE 120
           +QECVSEFISFVT EASDKC  EKRKTINGDDLLWAMATLGFEDY+DPLK+YL R+RE+E
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GERTTLASRDSASSAANSAAAGNSGFFDGGGEFG----GAGGSGMGMGMTTTMP 162
           G+ T  + +   SSA           F    + G    G  G+  G  M   MP
Sbjct: 121 GD-TKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQGPYGNSQGSNMMVQMP 173

[Close]

BLAST of Csa3G047800.1 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 167.9 bits (424), Expect = 5.8e-42
Identity = 89/157 (56.69%), Postives = 105/157 (66.88%), Query Frame = 1


Query: 6   NDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVT 65
           ++SGG    +S   RE DR LPIAN+ RIMK+ LP N KI+KDAKE VQECVSEFISFVT
Sbjct: 15  HESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVT 74

Query: 66  GEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSAS 125
            EASDKC  EKRKTINGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+ T  +++    
Sbjct: 75  SEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD-TKGSAKGGDP 134

Query: 126 SAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMP 162
           +A     +  +G F      G  G S     M   MP
Sbjct: 135 NAKKDGQSSQNGQFSQLAHQGPYGNSQAQQHMMVPMP 170

[Close]

BLAST of Csa3G047800.1 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 165.2 bits (417), Expect = 3.7e-41
Identity = 90/163 (55.21%), Postives = 105/163 (64.42%), Query Frame = 1


Query: 1   MADSDND-SGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+ +  +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTT--- 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+    +    
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREVFETNSVLFI 120

Query: 121 -----LASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGM 155
                L          ++  +G SG  DG     G G SG  M
Sbjct: 121 PWDWLLTHHLLMQLEGDNKGSGKSG--DGSNRDAGGGVSGEEM 161

[Close]

BLAST of Csa3G047800.1 vs. NCBI nr
Match: gi|449461061|ref|XP_004148262.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis sativus])

HSP 1 Score: 380.2 bits (975), Expect = 2.1e-102
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180
           DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

Query: 181 GRPR 185
           GRPR
Sbjct: 181 GRPR 184

[Close]

BLAST of Csa3G047800.1 vs. NCBI nr
Match: gi|659096321|ref|XP_008449032.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo])

HSP 1 Score: 354.8 bits (909), Expect = 9.4e-95
Identity = 177/189 (93.65%), Postives = 178/189 (94.18%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 64  MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 123

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 124 SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 183

Query: 121 DS-ASSAANSAAAGNSGFFDGGGEFGG----AGGSGMGMGMTTTMPPNVYGSNGPRWDGP 180
           DS ASSA NSAAAGNSGFFDGGGEFGG      G GMGMGMT  MPPNVYGS+GPRWDGP
Sbjct: 184 DSAASSAPNSAAAGNSGFFDGGGEFGGGMGMGMGMGMGMGMTMAMPPNVYGSDGPRWDGP 243

Query: 181 GFSTTGRPR 185
           GFSTTGRPR
Sbjct: 244 GFSTTGRPR 252

[Close]

BLAST of Csa3G047800.1 vs. NCBI nr
Match: gi|658028885|ref|XP_008349882.1| (PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-3-like [Malus domestica])

HSP 1 Score: 223.8 bits (569), Expect = 2.5e-55
Identity = 124/195 (63.59%), Postives = 140/195 (71.79%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSP-SPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG + KS  SPRE DRLLPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGAHGKSELSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK+YLQRFRE+EGE++++A+
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKSSVAA 120

Query: 121 RDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRW------- 180
           RD   S       G  G+  GGG  GG+ G G G+        +VYG +G          
Sbjct: 121 RDKDGS---GGGIGGVGYERGGGGGGGSSG-GAGVYWQQQHQGHVYGGSGFHQMGVSGVG 180

Query: 181 ---DGPGFSTTGRPR 185
               GPG S  GRPR
Sbjct: 181 MGKSGPG-SNMGRPR 190

[Close]

BLAST of Csa3G047800.1 vs. NCBI nr
Match: gi|470110598|ref|XP_004291567.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 220.3 bits (560), Expect = 2.8e-54
Identity = 119/179 (66.48%), Postives = 133/179 (74.30%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSPS---PREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVS 60
           MADSDNDSGGG+    S   PRE DRLLPIANV RIMKKALP NAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGGHNSPKSELSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTL 120
           EFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK+YLQRFRE+EGE++++
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKSSM 120

Query: 121 ASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPG 177
           A+RD  SS       G    F+GGG   GAGG G+        P +VYG  G    G G
Sbjct: 121 AARDKDSS-------GGVVGFEGGG--AGAGGGGV-YWQQQPQPGHVYGGGGFHQMGVG 169

[Close]

BLAST of Csa3G047800.1 vs. NCBI nr
Match: gi|657969216|ref|XP_008376324.1| (PREDICTED: nuclear transcription factor Y subunit B-3-like [Malus domestica])

HSP 1 Score: 219.5 bits (558), Expect = 4.7e-54
Identity = 110/149 (73.83%), Postives = 123/149 (82.55%), Query Frame = 1


Query: 1   MADSDNDSGGGYQKSP-SPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG + KS  SPRE DRLLPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGAHTKSELSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFE+YV+PLK+YLQRFRE+EGE++++++
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEKSSVSA 120

Query: 121 RDSASSAANSAAAGNSGFFDGGGEFGGAG 149
           RD   S   +   G  G   GGG  GGAG
Sbjct: 121 RDKDGSGGGNGGVGYEG---GGGSSGGAG 146

The following BLAST results are available for this feature:

BLAST of Csa3G047800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB2_ARATH	2.1e-54	61.46	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]
NFYB3_ARATH	8.9e-53	69.14	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2...	[more]
NFYB_MAIZE	1.7e-43	57.32	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]
NFYB3_ORYSJ	6.4e-43	61.22	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]
NFYB1_ARATH	9.2e-42	63.50	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1...	[more]

BLAST of Csa3G047800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4U4_CUCSA	1.5e-102	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G047800 PE=4 SV=1	[more]
A0A022QLU9_ERYGU	4.3e-54	59.41	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022879mg PE=4 SV=1	[more]
A0A022PN77_ERYGU	7.3e-54	58.91	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021836mg PE=4 SV=1	[more]
W9QFK9_9ROSA	1.6e-53	61.32	Nuclear transcription factor Y subunit B-3 OS=Morus notabilis GN=L484_018224 PE=...	[more]
B9IH15_POPTR	2.8e-53	58.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s00780g PE=4 SV=2	[more]

BLAST of Csa3G047800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47640.1	1.2e-55	61.46	nuclear factor Y, subunit B2	[more]
AT4G14540.1	5.0e-54	69.14	nuclear factor Y, subunit B3	[more]
AT3G53340.1	5.2e-43	54.60	nuclear factor Y, subunit B10	[more]
AT2G37060.1	5.8e-42	56.69	nuclear factor Y, subunit B8	[more]
AT2G38880.8	3.7e-41	55.21	nuclear factor Y, subunit B1	[more]

BLAST of Csa3G047800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461061\|ref\|XP_004148262.1\|	2.1e-102	100.00	PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis sativus]	[more]
gi\|659096321\|ref\|XP_008449032.1\|	9.4e-95	93.65	PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo]	[more]
gi\|658028885\|ref\|XP_008349882.1\|	2.5e-55	63.59	PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-3-like ...	[more]
gi\|470110598\|ref\|XP_004291567.1\|	2.8e-54	66.48	PREDICTED: nuclear transcription factor Y subunit B-3-like [Fragaria vesca subsp...	[more]
gi\|657969216\|ref\|XP_008376324.1\|	4.7e-54	73.83	PREDICTED: nuclear transcription factor Y subunit B-3-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003956	Transcrpt_fac_NFYB/HAP3_CS
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G047800	Csa3G047800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa3G047800.1	Csa3G047800.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G047800.1.utr5p1	Csa3G047800.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G047800.1.cds1	Csa3G047800.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 55..71 scor
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 24..88 score: 8.1
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 14..127 score: 1.1
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 22..124 score: 2.79
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 52..70 score: 2.4E-20coord: 71..89 score: 2.4E-20coord: 90..108 score: 2.4
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..168 score: 6.0
None	No IPR available	PANTHER	PTHR11064:SF45	SUBFAMILY NOT NAMED	coord: 1..168 score: 6.0