Csa1G654890 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G654890
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionYcf60-like protein
LocationChr1 : 26188659 .. 26190568 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGACAACACTATTTGTGTAGATATTTTTAAAATCGAGCTGACCCTAATTCGGTAGTTAATCGGGTTGGGAAGCCGTTTTTATAATTTAGCGTAAAAAGAATTATTTGAATTGAACTAAAAAGCCGTCGGAAAAGAGCATCGTTTCATCTTCTTCGTCCTCACTCTCCTACAAAGAAATGGCTTCCACTTCCATCCCCCTCCTCAATCTCTCCGCCAAAACCTCCATTAGAGCAGCTCTATTCCCTCACTCCTCCGCCATCAAATCTCGCCACCATTCTTCTCTCCCTTTTCTCCCCTCTAAGTCCCCAAAATTCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCTGTTGCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCATTCCAGCTTCGTCGCGTTCTTCGCTTTATACTTGGGCGTGGTTCGAAACCCCAGTTTCAATCACTATGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAAGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTGTGGTTTCTTGTCTTCTCGGTCGAACCCCACACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAGCTTCCAGGTTTGTTCTTCAACCCTTTCTCTTTCATCTATTTTTGGGATTTTTTTGGATTCAGGAGTTTGTAATTTGGGATTTTGATTTTTCTTTTCTGGAAGTTTTGGGGAAAATCTGAAATCAAATCAATGTAGGTTGGTCTGTACACTTTGATAAGATGTATGCGAGAGGAATTAAGAAGAAGTGTATTTTGATTGTGCATTTTTTTTTTTTTTTTGTTACGAGAGTTCTTTGCAGCTATACTAAATAAGTGTTTTTTGAAGCATTTGTGCAAGGAAACTGTAGATAATGAGATGACTTAAATACTATTTGGTACGCCATTACTTATCAAAAGGTTCATTTTGGTTTACATAGTTTCAAATTTT

mRNA sequence

ATGGCTTCCACTTCCATCCCCCTCCTCAATCTCTCCGCCAAAACCTCCATTAGAGCAGCTCTATTCCCTCACTCCTCCGCCATCAAATCTCGCCACCATTCTTCTCTCCCTTTTCTCCCCTCTAAGTCCCCAAAATTCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCTGTTGCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCATTCCAGCTTCGTCGCGTTCTTCGCTTTATACTTGGGCGTGGTTCGAAACCCCAGTTTCAATCACTATGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAAGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTGTGGTTTCTTGTCTTCTCGGTCGAACCCCACACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Coding sequence (CDS)

ATGGCTTCCACTTCCATCCCCCTCCTCAATCTCTCCGCCAAAACCTCCATTAGAGCAGCTCTATTCCCTCACTCCTCCGCCATCAAATCTCGCCACCATTCTTCTCTCCCTTTTCTCCCCTCTAAGTCCCCAAAATTCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCTGTTGCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCATTCCAGCTTCGTCGCGTTCTTCGCTTTATACTTGGGCGTGGTTCGAAACCCCAGTTTCAATCACTATGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAAGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTGTGGTTTCTTGTCTTCTCGGTCGAACCCCACACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Protein sequence

MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI*
Homology
[Close]
BLAST of Csa1G654890 vs. Swiss-Prot
Match: TI202_ARATH (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 4.1e-62
Identity = 113/160 (70.62%), Postives = 131/160 (81.88%), Query Frame = 1 

Query: 50  RMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHS 109
           R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LG  FEP+ PIL LYRS+P++
Sbjct: 49  RASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYA 108

Query: 110 SFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGR-SGIGFKIMV 169
           SFVAFF LYLGVVRN SF+ YVRFN+MQAVTLDVLL VP+L+ RIL PG+  G G K M+
Sbjct: 109 SFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMM 168

Query: 170 WSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           W H G+FVFS +CF+Y VVS LLG+TP++P VADAAGRQ+
Sbjct: 169 WGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of Csa1G654890 vs. Swiss-Prot
Match: TI205_ARATH (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.8e-34
Identity = 68/151 (45.03%), Postives = 99/151 (65.56%), Query Frame = 1 

Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY       +PL P +  ++S P + F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 177
           Y  VVRNP+F+ YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]
BLAST of Csa1G654890 vs. Swiss-Prot
Match: YC60L_SYNY3 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-21
Identity = 50/154 (32.47%), Postives = 85/154 (55.19%), Query Frame = 1 

Query: 60  DRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYL 119
           DR  SA+ Y +P  ++  +G FL  Q+P L   + P++P+L  Y   P +SF+ F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 120 GVVRNPSFNHYVRFNSMQAVTLDVL-----LVVPLLIQRILSPGRSGIGFKIMVWSHNGL 179
            VVRN + +H++RFN+MQA+ + +L     L+V  +IQ +   G       +    +N  
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQG------LVTETLYNFA 130

Query: 180 FVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           F+ ++ C  + +V  +LGR   +P ++DAA  Q+
Sbjct: 131 FLGALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]
BLAST of Csa1G654890 vs. Swiss-Prot
Match: YCF60_PORPU (Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-11
Identity = 57/170 (33.53%), Postives = 86/170 (50.59%), Query Frame = 1 

Query: 47  TPIRMSYNPTPATDRLISAVAYTLPFFNSLQ-YGRFLFAQYP--ALGFAFEPLLPILGLY 106
           T I  + + T  + RL+S + Y LP F  LQ +G+++   YP  A+    + LLP+L  Y
Sbjct: 33  TNINTTESKTRLSIRLVSIIPYYLPLFEGLQNFGQYVLPDYPVGAIPLYKKILLPMLIFY 92

Query: 107 RSIPHSSFVAFFALYLGVVRNPS---FNHYVRFNSMQAVTLDVLLVVPLLIQRILS--PG 166
            +      V FFALY  +VRN S    +  VRFNSMQ++   +L +V  L   I    P 
Sbjct: 93  MNHAILGLVTFFALYYVLVRNKSPITVHQLVRFNSMQSI---LLFLVGSLFGAIFRAFPI 152

Query: 167 RSGIGFKIMVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
              I F I +   N +F F +    YS+V  + G+  ++P++++A   QI
Sbjct: 153 EFRISF-IGLTVCNMMFWFILSTITYSIVKAIQGKYSNIPVISEAVRIQI 198

[Close]
BLAST of Csa1G654890 vs. Swiss-Prot
Match: YCF60_PYRYE (Tic20 family protein Ycf60 OS=Pyropia yezoensis GN=ycf60 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10
Identity = 54/168 (32.14%), Postives = 85/168 (50.60%), Query Frame = 1 

Query: 49  IRMSYNPTPATDRLISAVAYTLPFFNSLQ-YGRFLFAQYP--ALGFAFEPLLPILGLYRS 108
           I  + + T  + RL+S V Y LP F  LQ +G+++   YP  A+    + +LP+L  Y +
Sbjct: 35  INNTESKTRLSIRLVSTVPYYLPLFEGLQNFGQYVLPDYPVAAIPLYKKIILPMLIFYMN 94

Query: 109 IPHSSFVAFFALYLGVVRNPS---FNHYVRFNSMQAVTLDVLLVVPLLIQRILS--PGRS 168
                 V FFALY  +VRN S    +  VRFNSMQ++   +L +V  L   +    P   
Sbjct: 95  HAILGLVTFFALYYVLVRNKSPIPVHQLVRFNSMQSI---LLFLVGSLFGAVFRAFPIEF 154

Query: 169 GIGFKIMVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
            I F + +   N +F F +    YS+V  + G+  ++P++++A   QI
Sbjct: 155 RISF-LGLMVCNMMFWFVLSTITYSIVKAVQGKYSNIPVISEAVRIQI 198

[Close]
BLAST of Csa1G654890 vs. TrEMBL
Match: A0A0A0LXS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 4.6e-113
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 

Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           CFLYSVVSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]
BLAST of Csa1G654890 vs. TrEMBL
Match: A0A067JSM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18045 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.8e-69
Identity = 138/209 (66.03%), Postives = 162/209 (77.51%), Query Frame = 1 

Query: 5   SIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSK-----SPKFTPIRMSYNPTPAT 64
           SI  L L+   S++    P    + S    S  FL S      S K T  RMSYNPTPAT
Sbjct: 3   SISFLRLAPAASLKT--IPKPYPLSSFVPPSPLFLKSPTGTRLSQKLTITRMSYNPTPAT 62

Query: 65  DRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYL 124
           DRLISAVAYTLPFFNSLQYGRFLFAQYP LG  FEPL+P+L LYRS+P++SFVAFFALYL
Sbjct: 63  DRLISAVAYTLPFFNSLQYGRFLFAQYPQLGLLFEPLIPLLNLYRSMPYASFVAFFALYL 122

Query: 125 GVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSV 184
           GVVRNPSF+ YVRFNSMQAVTLDVLLVVPLL+ RI +PGRSG+GFK+++W HN +F+FS 
Sbjct: 123 GVVRNPSFSQYVRFNSMQAVTLDVLLVVPLLLARIFNPGRSGLGFKLLIWGHNAVFLFSC 182

Query: 185 LCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
            CF+Y +VS +LG+TP+LP V +AAGRQI
Sbjct: 183 FCFVYGLVSSVLGKTPYLPFVGEAAGRQI 209

[Close]
BLAST of Csa1G654890 vs. TrEMBL
Match: A0A0D2UI35_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G239700 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.1e-69
Identity = 131/191 (68.59%), Postives = 153/191 (80.10%), Query Frame = 1 

Query: 26  SAIKSRHHSSLPFLPS--------KSPKFTPIRMSYNPTPATDRLISAVAYTLPFFNSLQ 85
           S +  + + ++PFL          K P  T  RMS NPTPATDRLIS  AY+LPFFNSLQ
Sbjct: 16  SPLNPKPYPNIPFLSHPKPNLRLPKKPTTTITRMSLNPTPATDRLISVAAYSLPFFNSLQ 75

Query: 86  YGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLGVVRNPSFNHYVRFNSMQ 145
           YGR+LF QYP LG  F+P+LP L LY+S+P++SFVAFFALYLGVVRNPSF+HYVRFNSMQ
Sbjct: 76  YGRYLFIQYPQLGILFDPILPFLSLYKSVPYASFVAFFALYLGVVRNPSFSHYVRFNSMQ 135

Query: 146 AVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVLCFLYSVVSCLLGRTPHL 205
           AVTLDVLLVVPLL+ RI +PGR G+GFK+MVW H G+FVFS LCF+Y VVS +LGRTP+L
Sbjct: 136 AVTLDVLLVVPLLLTRIFNPGRVGLGFKVMVWGHTGVFVFSCLCFVYGVVSSILGRTPYL 195

Query: 206 PIVADAAGRQI 209
           P VADAAGRQI
Sbjct: 196 PFVADAAGRQI 206

[Close]
BLAST of Csa1G654890 vs. TrEMBL
Match: A0A061EZC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025129 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.2e-68
Identity = 131/194 (67.53%), Postives = 155/194 (79.90%), Query Frame = 1 

Query: 21  LFPHSSAIKSRHHSSLPFLPSKSPKF------TPIRMSYNPTPATDRLISAVAYTLPFFN 80
           L P  S I  +   +L FL     K       T  RMS NPTPATDRLISA AYTLPFFN
Sbjct: 10  LAPKLSPINPKSFPNLTFLNQSKSKVRLARRPTITRMSLNPTPATDRLISAAAYTLPFFN 69

Query: 81  SLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLGVVRNPSFNHYVRFN 140
           SLQYGR+LF QYP LG  F+PL+P+L LY+S+P++SFVAFFALYLGVVRNPSF+HYVRFN
Sbjct: 70  SLQYGRYLFIQYPQLGTLFDPLIPLLSLYKSVPYASFVAFFALYLGVVRNPSFSHYVRFN 129

Query: 141 SMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVLCFLYSVVSCLLGRT 200
           SMQAVTLDVLL+VPLL+ RIL+PGR+G+G+++MVW H G+FVFS LCF+Y VV  +LGRT
Sbjct: 130 SMQAVTLDVLLIVPLLLTRILNPGRAGLGYQVMVWGHTGVFVFSCLCFVYGVVWSILGRT 189

Query: 201 PHLPIVADAAGRQI 209
           P+LP VADAAGRQ+
Sbjct: 190 PYLPFVADAAGRQV 203

[Close]
BLAST of Csa1G654890 vs. TrEMBL
Match: A9PA48_POPTR (Tic20 family protein OS=Populus trichocarpa GN=POPTR_0013s08250g PE=2 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.0e-67
Identity = 132/203 (65.02%), Postives = 158/203 (77.83%), Query Frame = 1 

Query: 17  IRAALFPHSSAIKSRHHSS------LPFL--PSK---SPKFTPIRMSYNPTPATDRLISA 76
           +R +L P    +   H  S       PFL  P K   S K T  RMSYNPTPATDRL+SA
Sbjct: 7   LRLSLIPTPKTLSKSHPFSSFNPPLTPFLKFPPKTRLSQKSTVTRMSYNPTPATDRLVSA 66

Query: 77  VAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLGVVRNP 136
           V+YTLPFFNSLQYGRFLF  YP+L    +PL+P+L LYRSIP++SFVAFFALYLGVVRNP
Sbjct: 67  VSYTLPFFNSLQYGRFLFTTYPSLALLVDPLIPLLSLYRSIPYASFVAFFALYLGVVRNP 126

Query: 137 SFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVLCFLYS 196
           SF+ YVRFN+MQAVTLDVLLVVPLL+ RILSPGR+G+GFK+MVW HN LF+FS  CF+Y 
Sbjct: 127 SFSQYVRFNAMQAVTLDVLLVVPLLLTRILSPGRAGLGFKLMVWGHNALFLFSCFCFVYG 186

Query: 197 VVSCLLGRTPHLPIVADAAGRQI 209
           + S +LG+TP+LP +A+AAGRQ+
Sbjct: 187 LASSVLGKTPYLPFIAEAAGRQV 209

[Close]
BLAST of Csa1G654890 vs. TAIR10
Match: AT2G47840.1 (AT2G47840.1 Uncharacterised conserved protein ycf60)

HSP 1 Score: 239.2 bits (609), Expect = 2.3e-63
Identity = 113/160 (70.62%), Postives = 131/160 (81.88%), Query Frame = 1 

Query: 50  RMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHS 109
           R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LG  FEP+ PIL LYRS+P++
Sbjct: 49  RASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYA 108

Query: 110 SFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGR-SGIGFKIMV 169
           SFVAFF LYLGVVRN SF+ YVRFN+MQAVTLDVLL VP+L+ RIL PG+  G G K M+
Sbjct: 109 SFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMM 168

Query: 170 WSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           W H G+FVFS +CF+Y VVS LLG+TP++P VADAAGRQ+
Sbjct: 169 WGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of Csa1G654890 vs. TAIR10
Match: AT5G55710.1 (AT5G55710.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-35
Identity = 68/151 (45.03%), Postives = 99/151 (65.56%), Query Frame = 1 

Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY       +PL P +  ++S P + F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 177
           Y  VVRNP+F+ YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]
BLAST of Csa1G654890 vs. NCBI nr
Match: gi|449442661|ref|XP_004139099.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus])

HSP 1 Score: 415.2 bits (1066), Expect = 6.6e-113
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 

Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           CFLYSVVSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]
BLAST of Csa1G654890 vs. NCBI nr
Match: gi|659085922|ref|XP_008443678.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo])

HSP 1 Score: 392.9 bits (1008), Expect = 3.5e-106
Identity = 199/211 (94.31%), Postives = 203/211 (96.21%), Query Frame = 1 

Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKF---TPIRMSYNPTP 60
           MASTSIPLLNLSAKT+IRAALFPHSS IKSRHH SLPFLPSKS K    TPIRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 180
           YLGVVRNPSF+HYVRFNSMQAVTLDVLLVVPLLIQRILSPGR GIGFKIMVWSHNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           SVLCFLYS+VSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]
BLAST of Csa1G654890 vs. NCBI nr
Match: gi|1009118312|ref|XP_015875794.1| (PREDICTED: protein TIC 20-II, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 282.0 bits (720), Expect = 8.8e-73
Identity = 143/211 (67.77%), Postives = 167/211 (79.15%), Query Frame = 1 

Query: 1   MASTSIPLLNLSAKTSIR---AALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTP 60
           MAS  +  L+L+ KT  +    A  P  S        SL        K T  RMSYNPTP
Sbjct: 1   MASIPLVHLSLTPKTLTKPFLGARSPSFSYTLGAIPKSLHLKLKPKTKSTVTRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120
           ATDRLISAVAYTLPFFNSLQYGRF+F Q+P LG  F+PL+P+LGLYRSIP+SSFVAFFAL
Sbjct: 61  ATDRLISAVAYTLPFFNSLQYGRFVFMQFPRLGLLFDPLVPLLGLYRSIPYSSFVAFFAL 120

Query: 121 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 180
           YLGVVRNPSF+HYVRFN+MQAVTLDVLLV+PLLIQRI +PGR+G+GF+IMVW H+ LFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNAMQAVTLDVLLVLPLLIQRIFTPGRTGLGFRIMVWGHSALFVF 180

Query: 181 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           SV CF+Y++V C+LGRTP+LP VADAAGRQ+
Sbjct: 181 SVFCFVYTLVHCILGRTPYLPFVADAAGRQL 211

[Close]
BLAST of Csa1G654890 vs. NCBI nr
Match: gi|645223097|ref|XP_008218467.1| (PREDICTED: protein TIC 20-II, chloroplastic [Prunus mume])

HSP 1 Score: 275.0 bits (702), Expect = 1.1e-70
Identity = 149/219 (68.04%), Postives = 173/219 (79.00%), Query Frame = 1 

Query: 3   STSIPLLNLSA--KTSIRAAL----FPHSSAIKSRHHSSLPFLPSKS-PKFTPIRMS-YN 62
           ++SI LL+LSA  KT I  +     FP S+    R  S L  +  KS PK     MS YN
Sbjct: 2   ASSIALLHLSATPKTLIPKSYVCSSFPSSTLAAPRSISFLQLVKRKSKPKSNITCMSSYN 61

Query: 63  -----PTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHS 122
                PTPATDRLISAVAYTLPFFNSLQYGR+LF Q+P LG  FEPL+P+L LYRS+P+S
Sbjct: 62  NNTTTPTPATDRLISAVAYTLPFFNSLQYGRYLFFQFPKLGLLFEPLIPLLSLYRSMPYS 121

Query: 123 SFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVW 182
           SFVAFFALYLGVVRNPSF+HYVRFN+MQAVTLDVLLV+PLLIQRI SPGR+G+G+K+MVW
Sbjct: 122 SFVAFFALYLGVVRNPSFSHYVRFNAMQAVTLDVLLVLPLLIQRIFSPGRAGLGYKLMVW 181

Query: 183 SHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
            HNG+FVFSV CF+YSVVS +LGRTP+LP VADAA RQ+
Sbjct: 182 GHNGIFVFSVFCFVYSVVSSILGRTPYLPFVADAAARQL 220

[Close]
BLAST of Csa1G654890 vs. NCBI nr
Match: gi|764596660|ref|XP_011466077.1| (PREDICTED: protein TIC 20-II, chloroplastic isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 272.7 bits (696), Expect = 5.3e-70
Identity = 141/206 (68.45%), Postives = 167/206 (81.07%), Query Frame = 1 

Query: 5   SIPLLNLSAKTSIRAALFPH--SSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATDRL 64
           SI LL+  + T+ +A   P   +S I +R   SL F   KS   T +  S  PTPATDRL
Sbjct: 3   SIHLLHGLSPTTPKALALPRFRTSTIATR---SLSFPKPKSKTITCMS-SGTPTPATDRL 62

Query: 65  ISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLGVV 124
           ISAV+YTLPFFNSLQYGR+LF Q+P LG  FEPLLP+LGLYRSIP+SSFVAFFALYLGVV
Sbjct: 63  ISAVSYTLPFFNSLQYGRYLFLQFPKLGLLFEPLLPLLGLYRSIPYSSFVAFFALYLGVV 122

Query: 125 RNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVLCF 184
           RNPSF+HY RFN+MQAVTLDVLLV+PLL+QRI SPG++G+GFK+MVW HNG+FVFSV CF
Sbjct: 123 RNPSFSHYARFNAMQAVTLDVLLVLPLLVQRIFSPGQAGLGFKLMVWGHNGIFVFSVFCF 182

Query: 185 LYSVVSCLLGRTPHLPIVADAAGRQI 209
           +Y +VS +LGRTP+LP VADAAGRQ+
Sbjct: 183 VYGLVSSVLGRTPYLPFVADAAGRQL 204

The following BLAST results are available for this feature:
BLAST of Csa1G654890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI202_ARATH4.1e-6270.63Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1[more]
TI205_ARATH2.8e-3445.03Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1[more]
YC60L_SYNY32.0e-2132.47Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 ... [more]
YCF60_PORPU3.3e-1133.53Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1[more]
YCF60_PYRYE2.1e-1032.14Tic20 family protein Ycf60 OS=Pyropia yezoensis GN=ycf60 PE=3 SV=1[more]
BLAST of Csa1G654890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXS7_CUCSA4.6e-113100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1[more]
A0A067JSM5_JATCU1.8e-6966.03Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18045 PE=4 SV=1[more]
A0A0D2UI35_GOSRA3.1e-6968.59Uncharacterized protein OS=Gossypium raimondii GN=B456_010G239700 PE=4 SV=1[more]
A0A061EZC4_THECC1.2e-6867.53Uncharacterized protein OS=Theobroma cacao GN=TCM_025129 PE=4 SV=1[more]
A9PA48_POPTR1.0e-6765.02Tic20 family protein OS=Populus trichocarpa GN=POPTR_0013s08250g PE=2 SV=1[more]
BLAST of Csa1G654890 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47840.12.3e-6370.63 Uncharacterised conserved protein ycf60[more]
AT5G55710.11.6e-3545.03 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Csa1G654890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442661|ref|XP_004139099.1|6.6e-113100.00PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus][more]
gi|659085922|ref|XP_008443678.1|3.5e-10694.31PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo][more]
gi|1009118312|ref|XP_015875794.1|8.8e-7367.77PREDICTED: protein TIC 20-II, chloroplastic [Ziziphus jujuba][more]
gi|645223097|ref|XP_008218467.1|1.1e-7068.04PREDICTED: protein TIC 20-II, chloroplastic [Prunus mume][more]
gi|764596660|ref|XP_011466077.1|5.3e-7068.45PREDICTED: protein TIC 20-II, chloroplastic isoform X1 [Fragaria vesca subsp. ve... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20
IPR005691Tic20
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0008150 biological_process
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016791 phosphatase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091129cucumber EST collection version 3.0transcribed_cluster
CU095574cucumber EST collection version 3.0transcribed_cluster
CU110981cucumber EST collection version 3.0transcribed_cluster
CU117785cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G654890.1Csa1G654890.1mRNA
Csa1G654890.2Csa1G654890.2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU110981CU110981transcribed_cluster
CU117785CU117785transcribed_cluster
CU095574CU095574transcribed_cluster
CU091129CU091129transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 61..204
score: 1.5
NoneNo IPR availablePANTHERPTHR33510FAMILY NOT NAMEDcoord: 40..208
score: 1.5E
NoneNo IPR availablePANTHERPTHR33510:SF1PROTEIN TIC 20-II, CHLOROPLASTICcoord: 40..208
score: 1.5E