ClCG03G010550 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G010550
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTic20 family protein Ycf60
LocationCG_Chr03 : 19100947 .. 19101573 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCGTTGTTGCCGATGCTGCTGGCCGGCAGATTTAG

mRNA sequence

ATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCGTTGTTGCCGATGCTGCTGGCCGGCAGATTTAG

Coding sequence (CDS)

ATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCGTTGTTGCCGATGCTGCTGGCCGGCAGATTTAG

Protein sequence

MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI
Homology
[Close]
BLAST of ClCG03G010550 vs. Swiss-Prot
Match: TI202_ARATH (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.7e-63
Identity = 117/169 (69.23%), Postives = 136/169 (80.47%), Query Frame = 1 

Query: 41  SKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 100
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 101 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 160
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 161 SGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            G G K M+WGH G+FVFS +CF+Y +VS LLG+TP++P VADAAGRQ+
Sbjct: 160 GGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of ClCG03G010550 vs. Swiss-Prot
Match: TI205_ARATH (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 70/151 (46.36%), Postives = 100/151 (66.23%), Query Frame = 1 

Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 177
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]
BLAST of ClCG03G010550 vs. Swiss-Prot
Match: YC60L_SYNY3 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-22
Identity = 54/151 (35.76%), Postives = 89/151 (58.94%), Query Frame = 1 

Query: 60  DRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYL 119
           DR  SA+ Y +P  ++  +G FL  Q+PVL +   P++P+L  Y   P ASF+ F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 120 GVVRNPSFSHYVRFNSMQAVTLDVLL-VVPLLVQRILSP-GRSGLGFKIMVWGHNGLFVF 179
            VVRN + SH++RFN+MQA+ + +LL +  L+V  ++ P    GL  + +   +N  F+ 
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGLVTETL---YNFAFLG 130

Query: 180 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           ++ C  + +V  +LGR   +P ++DAA  Q+
Sbjct: 131 ALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]
BLAST of ClCG03G010550 vs. Swiss-Prot
Match: YCF60_PYRYE (Tic20 family protein Ycf60 OS=Pyropia yezoensis GN=ycf60 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-11
Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 1 

Query: 49  IRMSYNPTPATDRLISAVAYTLPFFNSLQ-YGRFLFAQYPVLGLAI--EPLLPILGLYRS 108
           I  + + T  + RL+S V Y LP F  LQ +G+++   YPV  + +  + +LP+L  Y +
Sbjct: 35  INNTESKTRLSIRLVSTVPYYLPLFEGLQNFGQYVLPDYPVAAIPLYKKIILPMLIFYMN 94

Query: 109 IPHASFVAFFALYLGVVRNPS---FSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGL 168
                 V FFALY  +VRN S       VRFNSMQ++   +L +V  L   +       +
Sbjct: 95  HAILGLVTFFALYYVLVRNKSPIPVHQLVRFNSMQSI---LLFLVGSLFGAVFR--AFPI 154

Query: 169 GFKIMVWG---HNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            F+I   G    N +F F +    YS+V  + G+  ++PV+++A   QI
Sbjct: 155 EFRISFLGLMVCNMMFWFVLSTITYSIVKAVQGKYSNIPVISEAVRIQI 198

[Close]
BLAST of ClCG03G010550 vs. Swiss-Prot
Match: YCF60_PORPU (Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.6e-11
Identity = 57/169 (33.73%), Postives = 85/169 (50.30%), Query Frame = 1 

Query: 49  IRMSYNPTPATDRLISAVAYTLPFFNSLQ-YGRFLFAQYPV--LGLAIEPLLPILGLYRS 108
           I  + + T  + RL+S + Y LP F  LQ +G+++   YPV  + L  + LLP+L  Y +
Sbjct: 35  INTTESKTRLSIRLVSIIPYYLPLFEGLQNFGQYVLPDYPVGAIPLYKKILLPMLIFYMN 94

Query: 109 IPHASFVAFFALYLGVVRNPS---FSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGL 168
                 V FFALY  +VRN S       VRFNSMQ++   +L +V  L   I       +
Sbjct: 95  HAILGLVTFFALYYVLVRNKSPITVHQLVRFNSMQSI---LLFLVGSLFGAIFR--AFPI 154

Query: 169 GFKIMVWG---HNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            F+I   G    N +F F +    YS+V  + G+  ++PV+++A   QI
Sbjct: 155 EFRISFIGLTVCNMMFWFILSTITYSIVKAIQGKYSNIPVISEAVRIQI 198

[Close]
BLAST of ClCG03G010550 vs. TrEMBL
Match: A0A0A0LXS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.1e-101
Identity = 187/208 (89.90%), Postives = 197/208 (94.71%), Query Frame = 1 

Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS+SIPLLNLSAK++I+AAL PHSSAIKSRH SSLPFLPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GFKIMVW HNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]
BLAST of ClCG03G010550 vs. TrEMBL
Match: A9PA48_POPTR (Tic20 family protein OS=Populus trichocarpa GN=POPTR_0013s08250g PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.6e-71
Identity = 138/209 (66.03%), Postives = 164/209 (78.47%), Query Frame = 1 

Query: 11  LSAKSAIKAALIPHSSAIKSRHRSS------LPFLPSKPA-----KSAVIRMSYNPTPAT 70
           +++ S ++ +LIP    +   H  S       PFL   P      KS V RMSYNPTPAT
Sbjct: 1   MASISLLRLSLIPTPKTLSKSHPFSSFNPPLTPFLKFPPKTRLSQKSTVTRMSYNPTPAT 60

Query: 71  DRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYL 130
           DRL+SAV+YTLPFFNSLQYGRFLF  YP L L ++PL+P+L LYRSIP+ASFVAFFALYL
Sbjct: 61  DRLVSAVSYTLPFFNSLQYGRFLFTTYPSLALLVDPLIPLLSLYRSIPYASFVAFFALYL 120

Query: 131 GVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSV 190
           GVVRNPSFS YVRFN+MQAVTLDVLLVVPLL+ RILSPGR+GLGFK+MVWGHN LF+FS 
Sbjct: 121 GVVRNPSFSQYVRFNAMQAVTLDVLLVVPLLLTRILSPGRAGLGFKLMVWGHNALFLFSC 180

Query: 191 LCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            CF+Y L S +LG+TP+LP +A+AAGRQ+
Sbjct: 181 FCFVYGLASSVLGKTPYLPFIAEAAGRQV 209

[Close]
BLAST of ClCG03G010550 vs. TrEMBL
Match: A0A067JSM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18045 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 5.7e-71
Identity = 142/210 (67.62%), Postives = 165/210 (78.57%), Query Frame = 1 

Query: 4   SSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPA-----KSAVIRMSYNPTPA 63
           +SI  L L+  +++K   IP    + S    S  FL S        K  + RMSYNPTPA
Sbjct: 2   ASISFLRLAPAASLKT--IPKPYPLSSFVPPSPLFLKSPTGTRLSQKLTITRMSYNPTPA 61

Query: 64  TDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALY 123
           TDRLISAVAYTLPFFNSLQYGRFLFAQYP LGL  EPL+P+L LYRS+P+ASFVAFFALY
Sbjct: 62  TDRLISAVAYTLPFFNSLQYGRFLFAQYPQLGLLFEPLIPLLNLYRSMPYASFVAFFALY 121

Query: 124 LGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFS 183
           LGVVRNPSFS YVRFNSMQAVTLDVLLVVPLL+ RI +PGRSGLGFK+++WGHN +F+FS
Sbjct: 122 LGVVRNPSFSQYVRFNSMQAVTLDVLLVVPLLLARIFNPGRSGLGFKLLIWGHNAVFLFS 181

Query: 184 VLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
             CF+Y LVS +LG+TP+LP V +AAGRQI
Sbjct: 182 CFCFVYGLVSSVLGKTPYLPFVGEAAGRQI 209

[Close]
BLAST of ClCG03G010550 vs. TrEMBL
Match: A0A0D2UI35_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G239700 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-69
Identity = 130/170 (76.47%), Postives = 148/170 (87.06%), Query Frame = 1 

Query: 39  LPSKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLP 98
           LP KP  + + RMS NPTPATDRLIS  AY+LPFFNSLQYGR+LF QYP LG+  +P+LP
Sbjct: 38  LPKKPT-TTITRMSLNPTPATDRLISVAAYSLPFFNSLQYGRYLFIQYPQLGILFDPILP 97

Query: 99  ILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPG 158
            L LY+S+P+ASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+ RI +PG
Sbjct: 98  FLSLYKSVPYASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLLTRIFNPG 157

Query: 159 RSGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           R GLGFK+MVWGH G+FVFS LCF+Y +VS +LGRTP+LP VADAAGRQI
Sbjct: 158 RVGLGFKVMVWGHTGVFVFSCLCFVYGVVSSILGRTPYLPFVADAAGRQI 206

[Close]
BLAST of ClCG03G010550 vs. TrEMBL
Match: A0A061EZC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025129 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.1e-69
Identity = 132/194 (68.04%), Postives = 156/194 (80.41%), Query Frame = 1 

Query: 21  LIPHSSAIKSRHRSSLPFLPSKPAK------SAVIRMSYNPTPATDRLISAVAYTLPFFN 80
           L P  S I  +   +L FL    +K        + RMS NPTPATDRLISA AYTLPFFN
Sbjct: 10  LAPKLSPINPKSFPNLTFLNQSKSKVRLARRPTITRMSLNPTPATDRLISAAAYTLPFFN 69

Query: 81  SLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFN 140
           SLQYGR+LF QYP LG   +PL+P+L LY+S+P+ASFVAFFALYLGVVRNPSFSHYVRFN
Sbjct: 70  SLQYGRYLFIQYPQLGTLFDPLIPLLSLYKSVPYASFVAFFALYLGVVRNPSFSHYVRFN 129

Query: 141 SMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRT 200
           SMQAVTLDVLL+VPLL+ RIL+PGR+GLG+++MVWGH G+FVFS LCF+Y +V  +LGRT
Sbjct: 130 SMQAVTLDVLLIVPLLLTRILNPGRAGLGYQVMVWGHTGVFVFSCLCFVYGVVWSILGRT 189

Query: 201 PHLPVVADAAGRQI 209
           P+LP VADAAGRQ+
Sbjct: 190 PYLPFVADAAGRQV 203

[Close]
BLAST of ClCG03G010550 vs. TAIR10
Match: AT2G47840.1 (AT2G47840.1 Uncharacterised conserved protein ycf60)

HSP 1 Score: 242.7 bits (618), Expect = 2.1e-64
Identity = 117/169 (69.23%), Postives = 136/169 (80.47%), Query Frame = 1 

Query: 41  SKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 100
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 101 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 160
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 161 SGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            G G K M+WGH G+FVFS +CF+Y +VS LLG+TP++P VADAAGRQ+
Sbjct: 160 GGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of ClCG03G010550 vs. TAIR10
Match: AT5G55710.1 (AT5G55710.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 147.5 bits (371), Expect = 9.0e-36
Identity = 70/151 (46.36%), Postives = 100/151 (66.23%), Query Frame = 1 

Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 177
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]
BLAST of ClCG03G010550 vs. NCBI nr
Match: gi|449442661|ref|XP_004139099.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 1.5e-101
Identity = 187/208 (89.90%), Postives = 197/208 (94.71%), Query Frame = 1 

Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS+SIPLLNLSAK++I+AAL PHSSAIKSRH SSLPFLPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GFKIMVW HNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]
BLAST of ClCG03G010550 vs. NCBI nr
Match: gi|659085922|ref|XP_008443678.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo])

HSP 1 Score: 374.0 bits (959), Expect = 1.7e-100
Identity = 188/211 (89.10%), Postives = 197/211 (93.36%), Query Frame = 1 

Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAV---IRMSYNPTP 60
           MAS+SIPLLNLSAK+AI+AAL PHSS IKSRH  SLPFLPSK AKSA    IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 180
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIMVW HNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           SVLCFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]
BLAST of ClCG03G010550 vs. NCBI nr
Match: gi|1009118312|ref|XP_015875794.1| (PREDICTED: protein TIC 20-II, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 286.2 bits (731), Expect = 4.6e-74
Identity = 149/211 (70.62%), Postives = 175/211 (82.94%), Query Frame = 1 

Query: 4   SSIPLLNLSA--KSAIKAALIPHSSAIKSRHRSSLP---FLPSKP-AKSAVIRMSYNPTP 63
           +SIPL++LS   K+  K  L   S +  S    ++P    L  KP  KS V RMSYNPTP
Sbjct: 2   ASIPLVHLSLTPKTLTKPFLGARSPSF-SYTLGAIPKSLHLKLKPKTKSTVTRMSYNPTP 61

Query: 64  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 123
           ATDRLISAVAYTLPFFNSLQYGRF+F Q+P LGL  +PL+P+LGLYRSIP++SFVAFFAL
Sbjct: 62  ATDRLISAVAYTLPFFNSLQYGRFVFMQFPRLGLLFDPLVPLLGLYRSIPYSSFVAFFAL 121

Query: 124 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 183
           YLGVVRNPSFSHYVRFN+MQAVTLDVLLV+PLL+QRI +PGR+GLGF+IMVWGH+ LFVF
Sbjct: 122 YLGVVRNPSFSHYVRFNAMQAVTLDVLLVLPLLIQRIFTPGRTGLGFRIMVWGHSALFVF 181

Query: 184 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           SV CF+Y+LV C+LGRTP+LP VADAAGRQ+
Sbjct: 182 SVFCFVYTLVHCILGRTPYLPFVADAAGRQL 211

[Close]
BLAST of ClCG03G010550 vs. NCBI nr
Match: gi|764596660|ref|XP_011466077.1| (PREDICTED: protein TIC 20-II, chloroplastic isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 277.7 bits (709), Expect = 1.6e-71
Identity = 144/207 (69.57%), Postives = 169/207 (81.64%), Query Frame = 1 

Query: 4   SSIPLLNLSAKSAIKAALIPH--SSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATDR 63
           +SI LL+  + +  KA  +P   +S I +R   SL F P   +K+     S  PTPATDR
Sbjct: 2   ASIHLLHGLSPTTPKALALPRFRTSTIATR---SLSF-PKPKSKTITCMSSGTPTPATDR 61

Query: 64  LISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLGV 123
           LISAV+YTLPFFNSLQYGR+LF Q+P LGL  EPLLP+LGLYRSIP++SFVAFFALYLGV
Sbjct: 62  LISAVSYTLPFFNSLQYGRYLFLQFPKLGLLFEPLLPLLGLYRSIPYSSFVAFFALYLGV 121

Query: 124 VRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVLC 183
           VRNPSFSHY RFN+MQAVTLDVLLV+PLLVQRI SPG++GLGFK+MVWGHNG+FVFSV C
Sbjct: 122 VRNPSFSHYARFNAMQAVTLDVLLVLPLLVQRIFSPGQAGLGFKLMVWGHNGIFVFSVFC 181

Query: 184 FLYSLVSCLLGRTPHLPVVADAAGRQI 209
           F+Y LVS +LGRTP+LP VADAAGRQ+
Sbjct: 182 FVYGLVSSVLGRTPYLPFVADAAGRQL 204

[Close]
BLAST of ClCG03G010550 vs. NCBI nr
Match: gi|645223097|ref|XP_008218467.1| (PREDICTED: protein TIC 20-II, chloroplastic [Prunus mume])

HSP 1 Score: 276.9 bits (707), Expect = 2.8e-71
Identity = 146/219 (66.67%), Postives = 173/219 (79.00%), Query Frame = 1 

Query: 3   SSSIPLLNLSA--KSAIKAALI----PHSSAIKSRHRSSLPFLP--SKPAKSAVIRMSYN 62
           +SSI LL+LSA  K+ I  + +    P S+    R  S L  +   SKP  +     SYN
Sbjct: 2   ASSIALLHLSATPKTLIPKSYVCSSFPSSTLAAPRSISFLQLVKRKSKPKSNITCMSSYN 61

Query: 63  -----PTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHA 122
                PTPATDRLISAVAYTLPFFNSLQYGR+LF Q+P LGL  EPL+P+L LYRS+P++
Sbjct: 62  NNTTTPTPATDRLISAVAYTLPFFNSLQYGRYLFFQFPKLGLLFEPLIPLLSLYRSMPYS 121

Query: 123 SFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVW 182
           SFVAFFALYLGVVRNPSFSHYVRFN+MQAVTLDVLLV+PLL+QRI SPGR+GLG+K+MVW
Sbjct: 122 SFVAFFALYLGVVRNPSFSHYVRFNAMQAVTLDVLLVLPLLIQRIFSPGRAGLGYKLMVW 181

Query: 183 GHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           GHNG+FVFSV CF+YS+VS +LGRTP+LP VADAA RQ+
Sbjct: 182 GHNGIFVFSVFCFVYSVVSSILGRTPYLPFVADAAARQL 220

The following BLAST results are available for this feature:
BLAST of ClCG03G010550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI202_ARATH3.7e-6369.23Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1[more]
TI205_ARATH1.6e-3446.36Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1[more]
YC60L_SYNY33.1e-2235.76Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 ... [more]
YCF60_PYRYE4.3e-1132.54Tic20 family protein Ycf60 OS=Pyropia yezoensis GN=ycf60 PE=3 SV=1[more]
YCF60_PORPU5.6e-1133.73Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1[more]
BLAST of ClCG03G010550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXS7_CUCSA1.1e-10189.90Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1[more]
A9PA48_POPTR2.6e-7166.03Tic20 family protein OS=Populus trichocarpa GN=POPTR_0013s08250g PE=2 SV=1[more]
A0A067JSM5_JATCU5.7e-7167.62Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18045 PE=4 SV=1[more]
A0A0D2UI35_GOSRA1.1e-6976.47Uncharacterized protein OS=Gossypium raimondii GN=B456_010G239700 PE=4 SV=1[more]
A0A061EZC4_THECC4.1e-6968.04Uncharacterized protein OS=Theobroma cacao GN=TCM_025129 PE=4 SV=1[more]
BLAST of ClCG03G010550 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47840.12.1e-6469.23 Uncharacterised conserved protein ycf60[more]
AT5G55710.19.0e-3646.36 FUNCTIONS IN: molecular_function unknown[more]
BLAST of ClCG03G010550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442661|ref|XP_004139099.1|1.5e-10189.90PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus][more]
gi|659085922|ref|XP_008443678.1|1.7e-10089.10PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo][more]
gi|1009118312|ref|XP_015875794.1|4.6e-7470.62PREDICTED: protein TIC 20-II, chloroplastic [Ziziphus jujuba][more]
gi|764596660|ref|XP_011466077.1|1.6e-7169.57PREDICTED: protein TIC 20-II, chloroplastic isoform X1 [Fragaria vesca subsp. ve... [more]
gi|645223097|ref|XP_008218467.1|2.8e-7166.67PREDICTED: protein TIC 20-II, chloroplastic [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0008150 biological_process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
cellular_component GO:0009528 plastid inner membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016791 phosphatase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G010550.1ClCG03G010550.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 61..204
score: 1.2
NoneNo IPR availablePANTHERPTHR33510FAMILY NOT NAMEDcoord: 40..208
score: 6.0E
NoneNo IPR availablePANTHERPTHR33510:SF1PROTEIN TIC 20-II, CHLOROPLASTICcoord: 40..208
score: 6.0E