Cla97C03G061190 (gene) Watermelon (97103) v2

Overview
NameCla97C03G061190
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionprotein TIC 20-II, chloroplastic
LocationCla97Chr03 : 17981375 .. 17982001 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCGTTGTTGCCGATGCTGCTGGCCGGCAGATTTAG

mRNA sequence

ATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCGTTGTTGCCGATGCTGCTGGCCGGCAGATTTAG

Coding sequence (CDS)

ATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCGTTGTTGCCGATGCTGCTGGCCGGCAGATTTAG

Protein sequence

MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI
Homology
[Close]
BLAST of Cla97C03G061190 vs. NCBI nr
Match: XP_004139099.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660220.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >KGN66660.1 hypothetical protein Csa_1G654890 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 3.1e-98
Identity = 187/208 (89.90%), Postives = 197/208 (94.71%), Query Frame = 0 

Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS+SIPLLNLSAK++I+AAL PHSSAIKSRH SSLPFLPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GFKIMVW HNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]
BLAST of Cla97C03G061190 vs. NCBI nr
Match: XP_008443678.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443681.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443682.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443683.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo])

HSP 1 Score: 364.0 bits (933), Expect = 3.4e-97
Identity = 188/211 (89.10%), Postives = 197/211 (93.36%), Query Frame = 0 

Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSA---VIRMSYNPTP 60
           MAS+SIPLLNLSAK+AI+AAL PHSS IKSRH  SLPFLPSK AKSA    IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 180
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIMVW HNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           SVLCFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]
BLAST of Cla97C03G061190 vs. NCBI nr
Match: XP_022987499.1 (protein TIC 20-II, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 360.1 bits (923), Expect = 4.9e-96
Identity = 184/208 (88.46%), Postives = 193/208 (92.79%), Query Frame = 0 

Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPS+PAKS  IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPGRSGLGF+IM W HNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSC+LGRTPHLP+VADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]
BLAST of Cla97C03G061190 vs. NCBI nr
Match: XP_022960653.1 (protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 protein TIC 20-II, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 359.4 bits (921), Expect = 8.4e-96
Identity = 184/208 (88.46%), Postives = 193/208 (92.79%), Query Frame = 0 

Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPSKPAKS  IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPG+SGLGF+IM W HNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSC+LGRTPHLP+VADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

[Close]
BLAST of Cla97C03G061190 vs. NCBI nr
Match: XP_023516082.1 (protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.0 bits (920), Expect = 1.1e-95
Identity = 184/208 (88.46%), Postives = 192/208 (92.31%), Query Frame = 0 

Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPSKPAKS  IRMSYNPTPATD
Sbjct: 1   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 120

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPG+SGLGF IM W HNGLFVFSVL
Sbjct: 121 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFHIMAWSHNGLFVFSVL 180

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSC+LGRTPHLP+VADAAGRQ+
Sbjct: 181 CFLYSVVSCILGRTPHLPIVADAAGRQV 208

[Close]
BLAST of Cla97C03G061190 vs. TrEMBL
Match: tr|A0A0A0LXS7|A0A0A0LXS7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 2.0e-98
Identity = 187/208 (89.90%), Postives = 197/208 (94.71%), Query Frame = 0 

Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MAS+SIPLLNLSAK++I+AAL PHSSAIKSRH SSLPFLPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFSVL 180
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GFKIMVW HNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           CFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]
BLAST of Cla97C03G061190 vs. TrEMBL
Match: tr|A0A1S3B9C6|A0A1S3B9C6_CUCME (protein TIC 20-II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487217 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 2.2e-97
Identity = 188/211 (89.10%), Postives = 197/211 (93.36%), Query Frame = 0 

Query: 1   MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSA---VIRMSYNPTP 60
           MAS+SIPLLNLSAK+AI+AAL PHSS IKSRH  SLPFLPSK AKSA    IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 180
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIMVW HNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           SVLCFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]
BLAST of Cla97C03G061190 vs. TrEMBL
Match: tr|A0A2P5CDH6|A0A2P5CDH6_PARAD (Chloroplast protein import component OS=Parasponia andersonii OX=3476 GN=PanWU01x14_162350 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 8.0e-71
Identity = 150/211 (71.09%), Postives = 171/211 (81.04%), Query Frame = 0 

Query: 4   SSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIRMSYN-----PTPA 63
           +SIPLL+LS+ +      I     I   H   L +  +  +KS   RMSYN      TPA
Sbjct: 2   ASIPLLHLSSSTPKPTITIARFPLIPKPHSPLLKW--NTKSKSTATRMSYNHNRGTTTPA 61

Query: 64  TDRLISAVAYTLPFFNSLQYGRFLFAQYPVLG-LAIEPLLPILGLYRSIPHASFVAFFAL 123
           TDRLISAVAYTLPFFNSLQYGRFLFAQYP LG L  +PLLPI+GLYRSIP++SFVAFFAL
Sbjct: 62  TDRLISAVAYTLPFFNSLQYGRFLFAQYPKLGRLLFDPLLPIIGLYRSIPYSSFVAFFAL 121

Query: 124 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 183
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRI SPGR+GLGF+++VW H  LFVF
Sbjct: 122 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLLQRIFSPGRAGLGFRVVVWVHTALFVF 181

Query: 184 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           SVLCF+YS+VSC+LGRTP+LP+VADAAGRQI
Sbjct: 182 SVLCFVYSVVSCVLGRTPYLPLVADAAGRQI 210

[Close]
BLAST of Cla97C03G061190 vs. TrEMBL
Match: tr|A0A218XML5|A0A218XML5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010978 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 8.9e-70
Identity = 133/176 (75.57%), Postives = 156/176 (88.64%), Query Frame = 0 

Query: 34  SSLPFLPSKPAKSA-VIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA 93
           S +P LP    +   V+RMSY+ TPATDRLISAVAY LPFFNSLQYGRFLF +YP LG+ 
Sbjct: 46  SRIPPLPRHRRRGGPVVRMSYSSTPATDRLISAVAYMLPFFNSLQYGRFLFLKYPALGVL 105

Query: 94  IEPLLPILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQ 153
            +P+LP+L LY+S+P+ASFVAFFALYLG+VRNPSFSHYVRFNSMQAVTLDVLLV+PLL+Q
Sbjct: 106 FDPILPLLSLYKSVPYASFVAFFALYLGIVRNPSFSHYVRFNSMQAVTLDVLLVIPLLLQ 165

Query: 154 RILSPGRSGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           RILSPGR+GLGF++MVWGHN +FVFSVLCFLYS+ S +LGRTP+LP VADAAGRQ+
Sbjct: 166 RILSPGRAGLGFRLMVWGHNAIFVFSVLCFLYSVASSILGRTPYLPFVADAAGRQL 221

[Close]
BLAST of Cla97C03G061190 vs. TrEMBL
Match: tr|A0A2P5EU92|A0A2P5EU92_9ROSA (Chloroplast protein import component OS=Trema orientalis OX=63057 GN=TorRG33x02_149720 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.0e-69
Identity = 149/213 (69.95%), Postives = 169/213 (79.34%), Query Frame = 0 

Query: 4   SSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPF--LPSKPAKSAVIRMSYN-----PT 63
           +SIPLL+LS+ +      I     I + H   L +  +          RMSYN      T
Sbjct: 2   ASIPLLHLSSATPKPTITIARFPLIPNPHSPLLKWNTISKSXXXXXXXRMSYNQNRGTTT 61

Query: 64  PATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLG-LAIEPLLPILGLYRSIPHASFVAFF 123
           PATDRLISAVAYTLPFFNSLQYGRFLFAQYP LG L  +PLLPI+GLYRSIP++SFVAFF
Sbjct: 62  PATDRLISAVAYTLPFFNSLQYGRFLFAQYPKLGRLLFDPLLPIIGLYRSIPYSSFVAFF 121

Query: 124 ALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLF 183
           ALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRI SPGR+GLGF+++VW H  LF
Sbjct: 122 ALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLLQRIFSPGRAGLGFRVVVWVHTALF 181

Query: 184 VFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           VFSVLCF+YSLVSC+LGRTP+LP+VADAAGRQI
Sbjct: 182 VFSVLCFVYSLVSCVLGRTPYLPLVADAAGRQI 214

[Close]
BLAST of Cla97C03G061190 vs. Swiss-Prot
Match: sp|O82251|TI202_ARATH (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 9.2e-62
Identity = 117/169 (69.23%), Postives = 138/169 (81.66%), Query Frame = 0 

Query: 41  SKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 100
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 101 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 160
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 161 SGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            G G K M+WGH G+FVFS +CF+Y +VS LLG+TP++P VADAAGRQ+
Sbjct: 160 GGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of Cla97C03G061190 vs. Swiss-Prot
Match: sp|Q9FM67|TI205_ARATH (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-33
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 0 

Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 177
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]
BLAST of Cla97C03G061190 vs. Swiss-Prot
Match: sp|P73387|YC60L_SYNY3 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-21
Identity = 54/151 (35.76%), Postives = 91/151 (60.26%), Query Frame = 0 

Query: 60  DRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYL 119
           DR  SA+ Y +P  ++  +G FL  Q+PVL +   P++P+L  Y   P ASF+ F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 120 GVVRNPSFSHYVRFNSMQAVTLDVLL-VVPLLVQRILSP-GRSGLGFKIMVWGHNGLFVF 179
            VVRN + SH++RFN+MQA+ + +LL +  L+V  ++ P    GL  + +   +N  F+ 
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGLVTETL---YNFAFLG 130

Query: 180 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
           ++ C  + +V  +LGR   +P ++DAA  Q+
Sbjct: 131 ALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]
BLAST of Cla97C03G061190 vs. Swiss-Prot
Match: sp|Q8GZ79|TI201_ARATH (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.6e-05
Identity = 57/225 (25.33%), Postives = 92/225 (40.89%), Query Frame = 0 

Query: 3   SSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSK------PAKSAVIRMSYNPT 62
           S  +PL  LSA S++        +  +     +LP LP +      P  S  +  S+   
Sbjct: 61  SRGVPLSYLSASSSLLL------NGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 63  PATD------RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHAS 122
           P T       R ++ + Y +P   +  Y    +  +P L        P LG    +P   
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 123 FVA-FFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVW 182
            +A FF  YLG+VR   + H+ RF+ +  + L++ L V   V + +  G        + W
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLG--------VYW 240

Query: 183 GHNGLFVFSVLCFLY------SLVSCLLGRTPHLPVVADAAGRQI 209
           G  G+  ++ + F Y      S+   L G    +P V DAA  QI
Sbjct: 241 GKFGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQI 271

[Close]
BLAST of Cla97C03G061190 vs. TAIR10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60)

HSP 1 Score: 238.0 bits (606), Expect = 5.1e-63
Identity = 117/169 (69.23%), Postives = 138/169 (81.66%), Query Frame = 0 

Query: 41  SKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 100
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 101 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 160
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 161 SGLGFKIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            G G K M+WGH G+FVFS +CF+Y +VS LLG+TP++P VADAAGRQ+
Sbjct: 160 GGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of Cla97C03G061190 vs. TAIR10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 144.4 bits (363), Expect = 7.7e-35
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 0 

Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 177
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSLVSCLLGRTPHLPVVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]
BLAST of Cla97C03G061190 vs. TAIR10
Match: AT1G04940.1 (translocon at the inner envelope membrane of chloroplasts 20)

HSP 1 Score: 49.7 bits (117), Expect = 2.6e-06
Identity = 57/225 (25.33%), Postives = 92/225 (40.89%), Query Frame = 0 

Query: 3   SSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSK------PAKSAVIRMSYNPT 62
           S  +PL  LSA S++        +  +     +LP LP +      P  S  +  S+   
Sbjct: 61  SRGVPLSYLSASSSLLL------NGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 63  PATD------RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHAS 122
           P T       R ++ + Y +P   +  Y    +  +P L        P LG    +P   
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 123 FVA-FFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVW 182
            +A FF  YLG+VR   + H+ RF+ +  + L++ L V   V + +  G        + W
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLG--------VYW 240

Query: 183 GHNGLFVFSVLCFLY------SLVSCLLGRTPHLPVVADAAGRQI 209
           G  G+  ++ + F Y      S+   L G    +P V DAA  QI
Sbjct: 241 GKFGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQI 271

[Close]
BLAST of Cla97C03G061190 vs. TAIR10
Match: AT1G04945.3 (HIT-type Zinc finger family protein)

HSP 1 Score: 42.0 bits (97), Expect = 5.4e-04
Identity = 47/195 (24.10%), Postives = 80/195 (41.03%), Query Frame = 0 

Query: 3   SSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSK------PAKSAVIRMSYNPT 62
           S  +PL  LSA S++        +  +     +LP LP +      P  S  +  S+   
Sbjct: 61  SRGVPLSYLSASSSLLL------NGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 63  PATD------RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHAS 122
           P T       R ++ + Y +P   +  Y    +  +P L        P LG    +P   
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 123 FVA-FFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVW 182
            +A FF  YLG+VR   + H+ RF+ +  + L++ L V   V + +  G        + W
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLG--------VYW 240

Query: 183 GHNGLFVFSVLCFLY 185
           G  G+  ++ + F Y
Sbjct: 241 GKFGMHFWTAVAFAY 241

The following BLAST results are available for this feature:
BLAST of Cla97C03G061190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139099.13.1e-9889.90PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 PR... [more]
XP_008443678.13.4e-9789.10PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDI... [more]
XP_022987499.14.9e-9688.46protein TIC 20-II, chloroplastic-like [Cucurbita maxima][more]
XP_022960653.18.4e-9688.46protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 prote... [more]
XP_023516082.11.1e-9588.46protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C03G061190 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXS7|A0A0A0LXS7_CUCSA2.0e-9889.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=4 SV=1[more]
tr|A0A1S3B9C6|A0A1S3B9C6_CUCME2.2e-9789.10protein TIC 20-II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487217 PE=4 SV... [more]
tr|A0A2P5CDH6|A0A2P5CDH6_PARAD8.0e-7171.09Chloroplast protein import component OS=Parasponia andersonii OX=3476 GN=PanWU01... [more]
tr|A0A218XML5|A0A218XML5_PUNGR8.9e-7075.57Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010978 PE=4 SV=1[more]
tr|A0A2P5EU92|A0A2P5EU92_9ROSA2.0e-6969.95Chloroplast protein import component OS=Trema orientalis OX=63057 GN=TorRG33x02_... [more]
BLAST of Cla97C03G061190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O82251|TI202_ARATH9.2e-6269.23Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=... [more]
sp|Q9FM67|TI205_ARATH1.4e-3346.36Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ... [more]
sp|P73387|YC60L_SYNY32.7e-2135.76Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ... [more]
sp|Q8GZ79|TI201_ARATH4.6e-0525.33Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 ... [more]
BLAST of Cla97C03G061190 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47840.15.1e-6369.23Uncharacterised conserved protein ycf60[more]
AT5G55710.17.7e-3546.36FUNCTIONS IN: molecular_function unknown[more]
AT1G04940.12.6e-0625.33translocon at the inner envelope membrane of chloroplasts 20[more]
AT1G04945.35.4e-0424.10HIT-type Zinc finger family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009536 plastid
cellular_component GO:0009528 plastid inner membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G061190.1Cla97C03G061190.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 61..204
e-value: 1.2E-44
score: 152.1
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510FAMILY NOT NAMEDcoord: 5..208
NoneNo IPR availablePANTHERPTHR33510:SF1PROTEIN TIC 20-II, CHLOROPLASTICcoord: 5..208