CsaV3_1G044440 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G044440
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	protein TIC 20-II, chloroplastic
Location	chr1 : 29783992 .. 29787143 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAAAGTAAGCAAAGAAAGAAAGAAAGAAAGTGAGTTAGAGAGAAACTTCAAGTGAAAGTATGAGCGAGTCTTTTGAAAGGTAAAAATGTGTTATTTCTAAAACTTTATTGTTTGTAATTTTTTTAAATAAAAGTTTCTTTCTTCTAAGTGAGTGTCTCTTTATTTTGTGTCAATTTCTTCAACATGTCCTGACAAGTTCTTTTTTCTTTTTATAGAATATTATTGGTTGAGTTAGTTGTTGGAAATGAACAACAAAGTCGATGATTGAAGTTAGTTGCTGAAGACGATCATAAGAGTTGGCCACAAATGTGATCGTTGCTGAATTACTTGATCGTTAAAGGTGGTATTTGTCATTCTTAGTTGTGTAAGGTGAATGTTGATATTTGATTGTTTGAGGTGATTGCCATCTATCATTGAAGTTAATTATGCAAGGTGATTTTAATTTGTTGAAGTTTATGGTTTAGGTAGTACGTTATTGGAGCCCAAAGTTGAAGGCAGTTTTTGAAGATGATTATCATAGTTGATTTTCACCAAAGTTTGTAGTCATGGGTGGTTGTCGAAGGTAGAAGTTGGCACTACAAGAAATCGATGTTCTTCCAACTGCACTTTTTGGCGTCAGGATAAGAAACGTCAAAAAATAGCACATACGTCGACGTCGTAAGGTGTGTGTCGACAAATTGAATCTTTCTCAACGTCATGAATCCGATGTTGATAATAGCTAGCCGATCCCCAACGTGGTACACGTACATGTTGGGAAAAAATAATTAAATAATAAATCTCTTTTTCTCGATGTCATGCATACGCACATAACATTTAACATTATAATTTTCTTTTTCTCGATGCCATGCATATATACATAAGAAATAGGTAAGTTGTGCCTGAGGTGGACATTTACGACGTTGAGGGAAAGGAAAACAATCAAATAATAATTCTTTTTTCCTCCGACGCCATGCAATTATGTCAAGAGTAAACGATATATACCCGATACATTACTAATGACATTGAGAATATTGTGTCACTAATGTTATCAGAAATAGGAGAGTGCTCCTGATGTTTTCTTTGTGCATCCGGAGTTCCCTATAAAAGGTCTGAGGTACTTGATAATGAGAGACAACACTATTTGTGTAGATATTTTTAAAATCGAGCTGACCCTAATTCGGTAGTTAATCGGGTTGGGAAGCCGTTTTTATAATTTAGCGTAAAAAGAATTATTTGAATTGAACTAAAAAGCCGTCGGAAAAGAGCATCGTTTCATCTTCTTCGTCCTCACTCTCCTACAAAGAAATGGCTTCCACTTCCATCCCCCTCCTCAATCTCTCCGCCAAAACCTCCATTAGAGCAGCTCTATTCCCTCACTCCTCCGCCATCAAATCTCGCCACCATTCTTCTCTCCCTTTTCTCCCCTCTAAGTCCCCAAAATTCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCTGTTGCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCATTCCAGCTTCGTCGCGTTCTTCGCTTTATACTTGGGCGTGGTTCGAAACCCCAGTTTCAATCACTATGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAAGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTGTGGTTTCTTGTCTTCTCGGTCGAACCCCACACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAGCTTCCAGGTTTGTTCTTCAACCCTTTCTCTTTCATCTATTTTTGGGATTTTTTTGGATTCAGGAGTTTGTAATTTGGGATTTTGATTTTTCTTTTCTGGAAGTTTTGGGGAAAATCTGAAATCAAATCAATGTAGGTTGGTCTGTACACTTTGATAAGATGTATGCGAGAGGAATTAAGAAGAAGTGTATTTTGATTGTGCATTTTTTTTTTTTTTTTGTTACGAGAGTTCTTTGCAGCTATACTAAATAAGTGTTTTTTGAAGCATTTGTGCAAGGAAACTGTAGATAATGAGATGACTTAAATACTATTTGGTACGCCATTACTTATCAAAAGGTTCATTTTGGTTTACATAGTTTCAAATTTTGTTTATTTTGGTACTCTATTTTCAAAAACAAGAACCAAAAGGTATATAGACCAAATTAGTGTTTGAACGTAATAGATGAAGGAAGTGATGATATTGGAGAGAACCATGTGGATGGAGAAGTGTTATGTGAAATAGGACCTGGTATTTTTTTTTTTTGAATGTAAGATCCACTATTGCAAATACATGTGGGAATCTTAAAACTAAGAAAAGCAAGAAGCAGTGTGTAAATTGAATCTACTTCTATATCCACTGAATATGTGAAGCTTGCAAGAGTGTTGGAGAGAGGATCTCTGTTTCACCGTGTAAGAAATTGGTAGCAATTTTTTTCTTTAATATGATGATAGGTGGATTCGATCTTTTATATTGTATATCATAATTATAATTAGGTGGAAGTTATGTCACAGCTAGGTAGGTTTGTAGCAACTAATGGTGGAGGGAAGCAAGCTGAAGTGAACATTGTTCCACTAGTATAAAGTATGCACCTCAATCTGGAGGTTGGAGGTTAAACCATCTCGCCAAACAATTGTGTAAGGAAAGGATGGTGATTCTTTGTAGTTTGGTTGAAAGAATGAGAGGCCCCATGAACTTTTGAAGAATTGATAGAAAAAATGGATGGGGACTTTCTTTCACTTTTATTTTTTTTATAAAATTTGATCTCTAAAACTTGTGATAGTTGTTAATTTGATCTCCATAGCAATCTTGGCTGACAAGCATCAAGATAACTCATTGAAATAGTTGGCTAAACAGAAGAAACTTATTGTGCTATTTTTGACAACTATCACTATTGACAAACACCTTTATAAAATATAATGGGTAATCTAGTTCATCCTCAATTGTTGGGGTACCGACAATTAGTTGACATTCTCACAAAG

mRNA sequence

ATGGCTTCCACTTCCATCCCCCTCCTCAATCTCTCCGCCAAAACCTCCATTAGAGCAGCTCTATTCCCTCACTCCTCCGCCATCAAATCTCGCCACCATTCTTCTCTCCCTTTTCTCCCCTCTAAGTCCCCAAAATTCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCTGTTGCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCATTCCAGCTTCGTCGCGTTCTTCGCTTTATACTTGGGCGTGGTTCGAAACCCCAGTTTCAATCACTATGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAAGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTGTGGTTTCTTGTCTTCTCGGTCGAACCCCACACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Coding sequence (CDS)

ATGGCTTCCACTTCCATCCCCCTCCTCAATCTCTCCGCCAAAACCTCCATTAGAGCAGCTCTATTCCCTCACTCCTCCGCCATCAAATCTCGCCACCATTCTTCTCTCCCTTTTCTCCCCTCTAAGTCCCCAAAATTCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCTGTTGCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCGCATTCCAGCTTCGTCGCGTTCTTCGCTTTATACTTGGGCGTGGTTCGAAACCCCAGTTTCAATCACTATGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAAGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTGTGGTTTCTTGTCTTCTCGGTCGAACCCCACACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Protein sequence

MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI

Homology

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BLAST of CsaV3_1G044440 vs. NCBI nr
Match: XP_004139099.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660220.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >KGN66660.1 hypothetical protein Csa_1G654890 [Cucumis sativus])

HSP 1 Score: 407.9 bits (1047), Expect = 2.1e-110
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           CFLYSVVSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

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BLAST of CsaV3_1G044440 vs. NCBI nr
Match: XP_008443678.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443681.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443682.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443683.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo])

HSP 1 Score: 385.6 bits (989), Expect = 1.1e-103
Identity = 199/211 (94.31%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPS---KSPKFTPIRMSYNPTP 60
           MASTSIPLLNLSAKT+IRAALFPHSS IKSRHH SLPFLPS   KS K TPIRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 180
           YLGVVRNPSF+HYVRFNSMQAVTLDVLLVVPLLIQRILSPGR GIGFKIMVWSHNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           SVLCFLYS+VSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

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BLAST of CsaV3_1G044440 vs. NCBI nr
Match: XP_022987499.1 (protein TIC 20-II, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 352.4 bits (903), Expect = 1.0e-93
Identity = 178/208 (85.58%), Postives = 189/208 (90.87%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MAS SIPLLNLS K +I+AAL PH SAIKSRH  SLP LPS+  K   IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG AFEPLLPILGLYRSIPHSSF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSF+ Y RFNSMQA+TLDVLLVVPLL+QRILSPGRSG+GF+IM WSHNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           CFLYSVVSC+LGRTPHLPIVADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

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BLAST of CsaV3_1G044440 vs. NCBI nr
Match: XP_022960653.1 (protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 protein TIC 20-II, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 351.7 bits (901), Expect = 1.7e-93
Identity = 178/208 (85.58%), Postives = 189/208 (90.87%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MAS SIPLLNLS K +I+AAL PH SAIKSRH  SLP LPSK  K   IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG AFEPLLPILGLYRSIPHSSF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSF+ Y RFNSMQA+TLDVLLVVPLL+QRILSPG+SG+GF+IM WSHNGLFVFSVL
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFSVL 182

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           CFLYSVVSC+LGRTPHLPIVADAAGRQ+
Sbjct: 183 CFLYSVVSCILGRTPHLPIVADAAGRQV 210

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BLAST of CsaV3_1G044440 vs. NCBI nr
Match: XP_023516082.1 (protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.3 bits (900), Expect = 2.3e-93
Identity = 178/208 (85.58%), Postives = 188/208 (90.38%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MAS SIPLLNLS K +I+AAL PH SAIKSRH  SLP LPSK  K   IRMSYNPTPATD
Sbjct: 1   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG AFEPLLPILGLYRSIPHSSF+AFFA YLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 120

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSF+ Y RFNSMQA+TLDVLLVVPLL+QRILSPG+SG+GF IM WSHNGLFVFSVL
Sbjct: 121 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFHIMAWSHNGLFVFSVL 180

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           CFLYSVVSC+LGRTPHLPIVADAAGRQ+
Sbjct: 181 CFLYSVVSCILGRTPHLPIVADAAGRQV 208

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BLAST of CsaV3_1G044440 vs. TAIR10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60)

HSP 1 Score: 236.5 bits (602), Expect = 1.5e-62
Identity = 113/160 (70.62%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 50  RMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHS 109
           R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LG  FEP+ PIL LYRS+P++
Sbjct: 49  RASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYA 108

Query: 110 SFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGR-SGIGFKIMV 169
           SFVAFF LYLGVVRN SF+ YVRFN+MQAVTLDVLL VP+L+ RIL PG+  G G K M+
Sbjct: 109 SFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMM 168

Query: 170 WSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           W H G+FVFS +CF+Y VVS LLG+TP++P VADAAGRQ+
Sbjct: 169 WGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

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BLAST of CsaV3_1G044440 vs. TAIR10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 144.4 bits (363), Expect = 7.7e-35
Identity = 68/151 (45.03%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY       +PL P +  ++S P + F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 177
           Y  VVRNP+F+ YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

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BLAST of CsaV3_1G044440 vs. TAIR10
Match: AT1G04940.1 (translocon at the inner envelope membrane of chloroplasts 20)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05
Identity = 55/225 (24.44%), Postives = 91/225 (40.44%), Query Frame = 0


Query: 3   STSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLP-SKSPKFTP-----IRMSYNPT 62
           S  +PL  LSA +S+        +  +     +LP LP  +    TP     +  S+   
Sbjct: 61  SRGVPLSYLSASSSLLL------NGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 63  PATD------RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 122
           P T       R ++ + Y +P   +  Y    +  +P L        P LG    +P   
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 123 FVA-FFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVW 182
            +A FF  YLG+VR   + H+ RF+ +  + L++ L V   + + +  G        + W
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLG--------VYW 240

Query: 183 SHNGLFVFSVLCFLY------SVVSCLLGRTPHLPIVADAAGRQI 209
              G+  ++ + F Y      S+   L G    +P V DAA  QI
Sbjct: 241 GKFGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQI 271

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BLAST of CsaV3_1G044440 vs. Swiss-Prot
Match: sp|O82251|TI202_ARATH (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.7e-61
Identity = 113/160 (70.62%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 50  RMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHS 109
           R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LG  FEP+ PIL LYRS+P++
Sbjct: 49  RASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYA 108

Query: 110 SFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGR-SGIGFKIMV 169
           SFVAFF LYLGVVRN SF+ YVRFN+MQAVTLDVLL VP+L+ RIL PG+  G G K M+
Sbjct: 109 SFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMM 168

Query: 170 WSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           W H G+FVFS +CF+Y VVS LLG+TP++P VADAAGRQ+
Sbjct: 169 WGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]

BLAST of CsaV3_1G044440 vs. Swiss-Prot
Match: sp|Q9FM67|TI205_ARATH (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-33
Identity = 68/151 (45.03%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY       +PL P +  ++S P + F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 177
           Y  VVRNP+F+ YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
            ++  +Y   +CL G TP LP+VA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]

BLAST of CsaV3_1G044440 vs. Swiss-Prot
Match: sp|P73387|YC60L_SYNY3 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-20
Identity = 50/154 (32.47%), Postives = 87/154 (56.49%), Query Frame = 0


Query: 60  DRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYL 119
           DR  SA+ Y +P  ++  +G FL  Q+P L   + P++P+L  Y   P +SF+ F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 120 GVVRNPSFNHYVRFNSMQAVTLDVL-----LVVPLLIQRILSPGRSGIGFKIMVWSHNGL 179
            VVRN + +H++RFN+MQA+ + +L     L+V  +IQ +   G       +    +N  
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQG------LVTETLYNFA 130

Query: 180 FVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           F+ ++ C  + +V  +LGR   +P ++DAA  Q+
Sbjct: 131 FLGALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]

BLAST of CsaV3_1G044440 vs. Swiss-Prot
Match: sp|Q9ZST8|TIC20_PEA (Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.5e-07
Identity = 49/193 (25.39%), Postives = 88/193 (45.60%), Query Frame = 0


Query: 35  SLPFLP-----SKSPKFTPIRMSYNPTPATD------RLISAVAYTLPFFNSLQYGRFLF 94
           ++P LP     S +P+ T     +   P T       R +S + Y LPF  +  Y R  +
Sbjct: 67  TIPVLPTLHKSSTTPRATKDSSGFRFPPMTKKPRWWWRTLSCIPYLLPFHQAWMYARTAY 126

Query: 95  AQYPALGFAFEPL-LPILGLYRSIPHSSFVAFFAL-YLGVVRNPSFNHYVRFNSMQAVTL 154
             +P + + F+P+  P L    ++P  S +A+F + YL +VR   + H+ RF+    + +
Sbjct: 127 HLHPFIPY-FQPMTYPFLMAIGTLPRWSLIAYFLIAYLTIVRRKEWPHFFRFHVAVGMLI 186

Query: 155 DVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSV--LCFLYSVVSC----LLGRTP 209
           ++ L V  ++ R +         +   W   G+  ++     FL++ + C    L+G   
Sbjct: 187 EIALQVTGIVSRWMP--------RSFYWGKLGMHFWTTAFFVFLFTTIECIRCALVGMYA 246

[Close]

BLAST of CsaV3_1G044440 vs. Swiss-Prot
Match: sp|Q8GZ79|TI201_ARATH (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.3e-04
Identity = 55/225 (24.44%), Postives = 91/225 (40.44%), Query Frame = 0


Query: 3   STSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLP-SKSPKFTP-----IRMSYNPT 62
           S  +PL  LSA +S+        +  +     +LP LP  +    TP     +  S+   
Sbjct: 61  SRGVPLSYLSASSSLLL------NGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFP 120

Query: 63  PATD------RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSS 122
           P T       R ++ + Y +P   +  Y    +  +P L        P LG    +P   
Sbjct: 121 PMTKKPQWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWF 180

Query: 123 FVA-FFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVW 182
            +A FF  YLG+VR   + H+ RF+ +  + L++ L V   + + +  G        + W
Sbjct: 181 LMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLG--------VYW 240

Query: 183 SHNGLFVFSVLCFLY------SVVSCLLGRTPHLPIVADAAGRQI 209
              G+  ++ + F Y      S+   L G    +P V DAA  QI
Sbjct: 241 GKFGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQI 271

[Close]

BLAST of CsaV3_1G044440 vs. TrEMBL
Match: tr|A0A0A0LXS7|A0A0A0LXS7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 1.4e-110
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60
           MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180
           VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           CFLYSVVSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]

BLAST of CsaV3_1G044440 vs. TrEMBL
Match: tr|A0A1S3B9C6|A0A1S3B9C6_CUCME (protein TIC 20-II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487217 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 7.2e-104
Identity = 199/211 (94.31%), Postives = 203/211 (96.21%), Query Frame = 0


Query: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPS---KSPKFTPIRMSYNPTP 60
           MASTSIPLLNLSAKT+IRAALFPHSS IKSRHH SLPFLPS   KS K TPIRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVF 180
           YLGVVRNPSF+HYVRFNSMQAVTLDVLLVVPLLIQRILSPGR GIGFKIMVWSHNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           SVLCFLYS+VSCLLGRTPHLPIVADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]

BLAST of CsaV3_1G044440 vs. TrEMBL
Match: tr|A0A2P5CDH6|A0A2P5CDH6_PARAD (Chloroplast protein import component OS=Parasponia andersonii OX=3476 GN=PanWU01x14_162350 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 8.6e-73
Identity = 156/213 (73.24%), Postives = 176/213 (82.63%), Query Frame = 0


Query: 5   SIPLLNLSAKT---SIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYN-----PT 64
           SIPLL+LS+ T   +I  A FP    +  + HS L    +KS K T  RMSYN      T
Sbjct: 3   SIPLLHLSSSTPKPTITIARFP----LIPKPHSPLLKWNTKS-KSTATRMSYNHNRGTTT 62

Query: 65  PATDRLISAVAYTLPFFNSLQYGRFLFAQYPALG-FAFEPLLPILGLYRSIPHSSFVAFF 124
           PATDRLISAVAYTLPFFNSLQYGRFLFAQYP LG   F+PLLPI+GLYRSIP+SSFVAFF
Sbjct: 63  PATDRLISAVAYTLPFFNSLQYGRFLFAQYPKLGRLLFDPLLPIIGLYRSIPYSSFVAFF 122

Query: 125 ALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLF 184
           ALYLGVVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRI SPGR+G+GF+++VW H  LF
Sbjct: 123 ALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLLQRIFSPGRAGLGFRVVVWVHTALF 182

Query: 185 VFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           VFSVLCF+YSVVSC+LGRTP+LP+VADAAGRQI
Sbjct: 183 VFSVLCFVYSVVSCVLGRTPYLPLVADAAGRQI 210

[Close]

BLAST of CsaV3_1G044440 vs. TrEMBL
Match: tr|A0A2P5EU92|A0A2P5EU92_9ROSA (Chloroplast protein import component OS=Trema orientalis OX=63057 GN=TorRG33x02_149720 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.3e-70
Identity = 151/215 (70.23%), Postives = 172/215 (80.00%), Query Frame = 0


Query: 5   SIPLLNLSA---KTSIRAALFPHSSAIKSRHHSSLPF--LPSKSPKFTPIRMSYN----- 64
           SIPLL+LS+   K +I  A FP    I + H   L +  +          RMSYN     
Sbjct: 3   SIPLLHLSSATPKPTITIARFP---LIPNPHSPLLKWNTISKSXXXXXXXRMSYNQNRGT 62

Query: 65  PTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALG-FAFEPLLPILGLYRSIPHSSFVA 124
            TPATDRLISAVAYTLPFFNSLQYGRFLFAQYP LG   F+PLLPI+GLYRSIP+SSFVA
Sbjct: 63  TTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPKLGRLLFDPLLPIIGLYRSIPYSSFVA 122

Query: 125 FFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNG 184
           FFALYLGVVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRI SPGR+G+GF+++VW H  
Sbjct: 123 FFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLLQRIFSPGRAGLGFRVVVWVHTA 182

Query: 185 LFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           LFVFSVLCF+YS+VSC+LGRTP+LP+VADAAGRQI
Sbjct: 183 LFVFSVLCFVYSLVSCVLGRTPYLPLVADAAGRQI 214

[Close]

BLAST of CsaV3_1G044440 vs. TrEMBL
Match: tr|A0A218XML5|A0A218XML5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010978 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 8.9e-70
Identity = 132/176 (75.00%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 34  SSLPFLPSKSPKFTP-IRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFA 93
           S +P LP    +  P +RMSY+ TPATDRLISAVAY LPFFNSLQYGRFLF +YPALG  
Sbjct: 46  SRIPPLPRHRRRGGPVVRMSYSSTPATDRLISAVAYMLPFFNSLQYGRFLFLKYPALGVL 105

Query: 94  FEPLLPILGLYRSIPHSSFVAFFALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQ 153
           F+P+LP+L LY+S+P++SFVAFFALYLG+VRNPSF+HYVRFNSMQAVTLDVLLV+PLL+Q
Sbjct: 106 FDPILPLLSLYKSVPYASFVAFFALYLGIVRNPSFSHYVRFNSMQAVTLDVLLVIPLLLQ 165

Query: 154 RILSPGRSGIGFKIMVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 209
           RILSPGR+G+GF++MVW HN +FVFSVLCFLYSV S +LGRTP+LP VADAAGRQ+
Sbjct: 166 RILSPGRAGLGFRLMVWGHNAIFVFSVLCFLYSVASSILGRTPYLPFVADAAGRQL 221

The following BLAST results are available for this feature:

BLAST of CsaV3_1G044440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139099.1	2.1e-110	100.00	PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 PR...	[more]
XP_008443678.1	1.1e-103	94.31	PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDI...	[more]
XP_022987499.1	1.0e-93	85.58	protein TIC 20-II, chloroplastic-like [Cucurbita maxima]	[more]
XP_022960653.1	1.7e-93	85.58	protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 prote...	[more]
XP_023516082.1	2.3e-93	85.58	protein TIC 20-II, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G044440 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47840.1	1.5e-62	70.63	Uncharacterised conserved protein ycf60	[more]
AT5G55710.1	7.7e-35	45.03	FUNCTIONS IN: molecular_function unknown	[more]
AT1G04940.1	1.3e-05	24.44	translocon at the inner envelope membrane of chloroplasts 20	[more]

BLAST of CsaV3_1G044440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82251\|TI202_ARATH	2.7e-61	70.63	Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=...	[more]
sp\|Q9FM67\|TI205_ARATH	1.4e-33	45.03	Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ...	[more]
sp\|P73387\|YC60L_SYNY3	1.3e-20	32.47	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]
sp\|Q9ZST8\|TIC20_PEA	6.5e-07	25.39	Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1	[more]
sp\|Q8GZ79\|TI201_ARATH	2.3e-04	24.44	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 ...	[more]

BLAST of CsaV3_1G044440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXS7\|A0A0A0LXS7_CUCSA	1.4e-110	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=4 SV=1	[more]
tr\|A0A1S3B9C6\|A0A1S3B9C6_CUCME	7.2e-104	94.31	protein TIC 20-II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487217 PE=4 SV...	[more]
tr\|A0A2P5CDH6\|A0A2P5CDH6_PARAD	8.6e-73	73.24	Chloroplast protein import component OS=Parasponia andersonii OX=3476 GN=PanWU01...	[more]
tr\|A0A2P5EU92\|A0A2P5EU92_9ROSA	2.3e-70	70.23	Chloroplast protein import component OS=Trema orientalis OX=63057 GN=TorRG33x02_...	[more]
tr\|A0A218XML5\|A0A218XML5_PUNGR	8.9e-70	75.00	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010978 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005691	Tic20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006470	protein dephosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016791	phosphatase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G044440.1	CsaV3_1G044440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 61..204 e-value: 1.5E-44 score: 151.8
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	FAMILY NOT NAMED	coord: 5..208
None	No IPR available	PANTHER	PTHR33510:SF1	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 5..208

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G044440	CSPI01G32210	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G044440	Cucsa.356610	Cucumber (Gy14) v1	cgycucB542
CsaV3_1G044440	CmaCh10G008390	Cucurbita maxima (Rimu)	cmacucB0066
CsaV3_1G044440	CmaCh11G009280	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G044440	CmoCh10G008690	Cucurbita moschata (Rifu)	cmocucB0053
CsaV3_1G044440	Cp4.1LG00g01470	Cucurbita pepo (Zucchini)	cpecucB0000
CsaV3_1G044440	CsGy1G031140	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G044440	Carg22719	Silver-seed gourd	carcucB0573
CsaV3_1G044440	Carg17801	Silver-seed gourd	carcucB1010
CsaV3_1G044440	Cla009541	Watermelon (97103) v1	cucwmB016
CsaV3_1G044440	MELO3C010044	Melon (DHL92) v3.5.1	cucmeB044
CsaV3_1G044440	ClCG03G010550	Watermelon (Charleston Gray)	cucwcgB041
CsaV3_1G044440	Lsi06G006860	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G044440	MELO3C010044.2	Melon (DHL92) v3.6.1	cucmedB041
CsaV3_1G044440	Cla97C03G061190	Watermelon (97103) v2	cucwmbB033
CsaV3_1G044440	Bhi02G001093	Wax gourd	cucwgoB115

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G044440	Wax gourd	cucwgoB098
CsaV3_1G044440	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G044440	Cucurbita pepo (Zucchini)	cpecucB0428