CmaCh11G009280 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G009280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProtein TIC 20-v, chloroplastic
LocationCma_Chr11 : 4871229 .. 4872716 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACTTTCATCCCTCTCCTCAACCTCCCCACTCATACTGCCATTAAAGCCACTCTAATCCCTCACTTGTCCGTCCTCAAATCTCGCCACCGTTCCTCTCTCCCTCTTCTCTCCTCAAAACCCGCAAAATCCGTCGCCGTTCGCATGTCCTACAACCCTACTCCCGCCACCGACCGCCTCATCTCTGCCGTTGCCTATACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCCGGTCCTCGGCCTCGCCTTCGAGCCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCGAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGAACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACTCTGGACGTGCTGCTGGCGGTGCCATTGTTGATACAGAGGATTCTGAGTCCCGGTTCGGGCGGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTCGTTTACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTTGCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAGGCTTAGGTTTGTTCCTCAACCGTTCTTTCTCATCCTTTCCTCTTTTTATCACCATTTTTTCCTCTGAGAATTTTTGGATTGAAAAGCTTGTAATTCTGAAATTATTGGATTATTCTTTGAAATTATTGGAATTCTGAAACAATGTTGGTCCATACACCTTTAGATGATGCGTGAGAAATGAATTGAGAAGTGTATTTTAGTTGTGCCTTTTCTGATTATGAGTTTCTGCAGCAGCTATACTGAACAGTTTTGCAAAAGGAAAATTTTGGGTAAGAGGCAATTGCAATAGGTTGATCATGGATGATGGATAGCTCTCAAGGTTAGCCCCTTTGGTTAAGGCAAGTTGGGCTTAAGGCATGTAGTCTACCTTACCCATAGGTTAAGTGTTCAAAATTTTAGGCGAGCTTAATAAGAAAAACCTTCGATGTCTTCCGACGTTGGTGTCCTATGCTTGGATTGGAAAAAAGGGTTTACAAAAAGCAAGAAAAAGGGATTGATTAAGGTAGAGTGAAGTCTACTAGATGTATTGAATTGAATTGCTATAAGACAACCCGGGTGGATGTTTCGAAGAATGATTCTAGAACTAGAATTGGATGGAATCCAACATATGAATAATTGTGGGGCAGTGTGCCACGAAACTGAGTTGCAAAGGAGGCAGTAGTGTCATAAATATTAGAGGAAGGTTGATAGATATTGAGGAGAGCAACGAGGATTGGTAATTCATGAAGTGGAAGAGAATGTACTGTTTTCTTATGGATGTTCCTGGCCACTGCAACTTCATGCTTTCTTTTCAGTTTTCACCCCCTTCTTGACTAGGAGCGTAGGGAGAGCCCGTTGCGCCTTGTTTTTGTTTGACCGGCC

mRNA sequence

ATGGCTTCCACTTTCATCCCTCTCCTCAACCTCCCCACTCATACTGCCATTAAAGCCACTCTAATCCCTCACTTGTCCGTCCTCAAATCTCGCCACCGTTCCTCTCTCCCTCTTCTCTCCTCAAAACCCGCAAAATCCGTCGCCGTTCGCATGTCCTACAACCCTACTCCCGCCACCGACCGCCTCATCTCTGCCGTTGCCTATACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCCGGTCCTCGGCCTCGCCTTCGAGCCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCGAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGAACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACTCTGGACGTGCTGCTGGCGGTGCCATTGTTGATACAGAGGATTCTGAGTCCCGGTTCGGGCGGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTCGTTTACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTTGCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAGGCTTAGGTTTGTTCCTCAACCGTTCTTTCTCATCCTTTCCTCTTTTTATCACCATTTTTTCCTCTGAGAATTTTTGGATTGAAAAGCTTGTAATTCTGAAATTATTGGATTATTCTTTGAAATTATTGGAATTCTGAAACAATGTTGGTCCATACACCTTTAGATGATGCGTGAGAAATGAATTGAGAAGTGTATTTTAGTTGTGCCTTTTCTGATTATGAGTTTCTGCAGCAGCTATACTGAACAGTTTTGCAAAAGGAAAATTTTGGGTAAGAGGCAATTGCAATAGGTTGATCATGGATGATGGATAGCTCTCAAGGTTAGCCCCTTTGGTTAAGGCAAGTTGGGCTTAAGGCATGTAGTCTACCTTACCCATAGGTTAAGTGTTCAAAATTTTAGGCGAGCTTAATAAGAAAAACCTTCGATGTCTTCCGACGTTGGTGTCCTATGCTTGGATTGGAAAAAAGGGTTTACAAAAAGCAAGAAAAAGGGATTGATTAAGGTAGAGTGAAGTCTACTAGATGTATTGAATTGAATTGCTATAAGACAACCCGGGTGGATGTTTCGAAGAATGATTCTAGAACTAGAATTGGATGGAATCCAACATATGAATAATTGTGGGGCAGTGTGCCACGAAACTGAGTTGCAAAGGAGGCAGTAGTGTCATAAATATTAGAGGAAGGTTGATAGATATTGAGGAGAGCAACGAGGATTGGTAATTCATGAAGTGGAAGAGAATGTACTGTTTTCTTATGGATGTTCCTGGCCACTGCAACTTCATGCTTTCTTTTCAGTTTTCACCCCCTTCTTGACTAGGAGCGTAGGGAGAGCCCGTTGCGCCTTGTTTTTGTTTGACCGGCC

Coding sequence (CDS)

ATGGCTTCCACTTTCATCCCTCTCCTCAACCTCCCCACTCATACTGCCATTAAAGCCACTCTAATCCCTCACTTGTCCGTCCTCAAATCTCGCCACCGTTCCTCTCTCCCTCTTCTCTCCTCAAAACCCGCAAAATCCGTCGCCGTTCGCATGTCCTACAACCCTACTCCCGCCACCGACCGCCTCATCTCTGCCGTTGCCTATACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCACCCAGTACCCGGTCCTCGGCCTCGCCTTCGAGCCGATTCTCCCTATTCTAGGGCTTTATCGCTCGATCCCACACTCGAGCTTCATCGCCTTCTTTGCGCTCTACTTGGGCGTTGTCCGGAACCCTAACTTCAACCGCTACGTGAGGTTCAATTCAATGCAGGCGGTGACTCTGGACGTGCTGCTGGCGGTGCCATTGTTGATACAGAGGATTCTGAGTCCCGGTTCGGGCGGATTAGGGTTCCAGATTATGGTTTGGGGCCATAATGGATTGTTTCTTTTCAGTGTTTTGTGTTTCGTTTACAGTCTCGCTTCTTGCCTTCTGGGTCGGACCCCTCACTTGCCGCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Protein sequence

MASTFIPLLNLPTHTAIKATLIPHLSVLKSRHRSSLPLLSSKPAKSVAVRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWGHNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI
Homology
[Close]
BLAST of CmaCh11G009280 vs. Swiss-Prot
Match: TI202_ARATH (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 6.3e-63
Identity = 116/170 (68.24%), Postives = 141/170 (82.94%), Query Frame = 1 

Query: 40  SSKPAKSVAVRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPI 99
           SS+ A ++  R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLF QYP LGL FEPI PI
Sbjct: 39  SSRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPI 98

Query: 100 LGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPG- 159
           L LYRS+P++SF+AFF LYLGVVRN +F+RYVRFN+MQAVTLDVLLAVP+L+ RIL PG 
Sbjct: 99  LNLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQ 158

Query: 160 SGGLGFQIMVWGHNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
            GG G + M+WGH G+F+FS +CFVY + S LLG+TP++P VADAAGRQ+
Sbjct: 159 GGGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of CmaCh11G009280 vs. Swiss-Prot
Match: TI205_ARATH (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.2e-35
Identity = 79/179 (44.13%), Postives = 114/179 (63.69%), Query Frame = 1 

Query: 30  SRHRSSLPLLSSKPAKSVAVRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVL 89
           SR R++  +L SK   SV          A+DR+ISAV Y  PFF+ +QYG+F+ TQY   
Sbjct: 40  SRDRAATLVLQSKGDDSV---------DASDRIISAVCYFYPFFDGIQYGKFIITQYQPF 99

Query: 90  GLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPL 149
            +  +P+ P +  ++S P + F+ F  LY  VVRNPNF+RYVRFN+MQA+ LDVLL  P 
Sbjct: 100 QILIQPLFPAIRAFKSFPFNGFLIFITLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPD 159

Query: 150 LIQRILSPGSGGLGFQIMVWGHNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
           L++R  +P   G G  +++   + +FLF ++  +Y  ++CL G TP LPLVA+AA RQ+
Sbjct: 160 LLERSFNP-RDGFGLDVVMSLDSTVFLFLLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]
BLAST of CmaCh11G009280 vs. Swiss-Prot
Match: YC60L_SYNY3 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.0e-22
Identity = 54/151 (35.76%), Postives = 92/151 (60.93%), Query Frame = 1 

Query: 60  DRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYL 119
           DR  SA+ Y +P  ++  +G FL  Q+PVL + + PI+P+L  Y   P +SFI F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 120 GVVRNPNFNRYVRFNSMQAVTLDVLLAV-PLLIQRILSPGSG-GLGFQIMVWGHNGLFLF 179
            VVRN N + ++RFN+MQA+ + +LL++  L++  ++ P  G GL  + +   +N  FL 
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGLVTETL---YNFAFLG 130

Query: 180 SVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
           ++ C  + +   +LGR   +P ++DAA  Q+
Sbjct: 131 ALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]
BLAST of CmaCh11G009280 vs. Swiss-Prot
Match: YCF60_PYRYE (Tic20 family protein Ycf60 OS=Pyropia yezoensis GN=ycf60 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-09
Identity = 49/157 (31.21%), Postives = 83/157 (52.87%), Query Frame = 1 

Query: 61  RLISAVAYTLPFFNSLQ-YGRFLFTQYPVLGLAF--EPILPILGLYRSIPHSSFIAFFAL 120
           RL+S V Y LP F  LQ +G+++   YPV  +    + ILP+L  Y +      + FFAL
Sbjct: 47  RLVSTVPYYLPLFEGLQNFGQYVLPDYPVAAIPLYKKIILPMLIFYMNHAILGLVTFFAL 106

Query: 121 YLGVVRNPN---FNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWG---H 180
           Y  +VRN +    ++ VRFNSMQ++ L ++ ++   + R        + F+I   G    
Sbjct: 107 YYVLVRNKSPIPVHQLVRFNSMQSILLFLVGSLFGAVFRAFP-----IEFRISFLGLMVC 166

Query: 181 NGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
           N +F F +    YS+   + G+  ++P++++A   QI
Sbjct: 167 NMMFWFVLSTITYSIVKAVQGKYSNIPVISEAVRIQI 198

[Close]
BLAST of CmaCh11G009280 vs. Swiss-Prot
Match: YCF60_PORPU (Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.9e-09
Identity = 50/169 (29.59%), Postives = 89/169 (52.66%), Query Frame = 1 

Query: 49  VRMSYNPTPATDRLISAVAYTLPFFNSLQ-YGRFLFTQYPV--LGLAFEPILPILGLYRS 108
           +  + + T  + RL+S + Y LP F  LQ +G+++   YPV  + L  + +LP+L  Y +
Sbjct: 35  INTTESKTRLSIRLVSIIPYYLPLFEGLQNFGQYVLPDYPVGAIPLYKKILLPMLIFYMN 94

Query: 109 IPHSSFIAFFALYLGVVRNPN---FNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGL 168
                 + FFALY  +VRN +    ++ VRFNSMQ++ L ++ ++   I R        +
Sbjct: 95  HAILGLVTFFALYYVLVRNKSPITVHQLVRFNSMQSILLFLVGSLFGAIFRAFP-----I 154

Query: 169 GFQIMVWG---HNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
            F+I   G    N +F F +    YS+   + G+  ++P++++A   QI
Sbjct: 155 EFRISFIGLTVCNMMFWFILSTITYSIVKAIQGKYSNIPVISEAVRIQI 198

[Close]
BLAST of CmaCh11G009280 vs. TrEMBL
Match: A0A0A0LXS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.1e-90
Identity = 170/208 (81.73%), Postives = 183/208 (87.98%), Query Frame = 1 

Query: 1   MASTFIPLLNLPTHTAIKATLIPHLSVLKSRHRSSLPLLSSKPAKSVAVRMSYNPTPATD 60
           MAST IPLLNL   T+I+A L PH S +KSRH SSLP L SK  K   +RMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSSF+AFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWGHNGLFLFSVL 180
           VVRNP+FN YVRFNSMQAVTLDVLL VPLLIQRILSPG  G+GF+IMVW HNGLF+FSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFVYSLASCLLGRTPHLPLVADAAGRQI 209
           CF+YS+ SCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]
BLAST of CmaCh11G009280 vs. TrEMBL
Match: A9PA48_POPTR (Tic20 family protein OS=Populus trichocarpa GN=POPTR_0013s08250g PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-66
Identity = 132/203 (65.02%), Postives = 157/203 (77.34%), Query Frame = 1 

Query: 17  IKATLIPHLSVLKSRHRSS------LPLLSSKPA-----KSVAVRMSYNPTPATDRLISA 76
           ++ +LIP    L   H  S       P L   P      KS   RMSYNPTPATDRL+SA
Sbjct: 7   LRLSLIPTPKTLSKSHPFSSFNPPLTPFLKFPPKTRLSQKSTVTRMSYNPTPATDRLVSA 66

Query: 77  VAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNP 136
           V+YTLPFFNSLQYGRFLFT YP L L  +P++P+L LYRSIP++SF+AFFALYLGVVRNP
Sbjct: 67  VSYTLPFFNSLQYGRFLFTTYPSLALLVDPLIPLLSLYRSIPYASFVAFFALYLGVVRNP 126

Query: 137 NFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWGHNGLFLFSVLCFVYS 196
           +F++YVRFN+MQAVTLDVLL VPLL+ RILSPG  GLGF++MVWGHN LFLFS  CFVY 
Sbjct: 127 SFSQYVRFNAMQAVTLDVLLVVPLLLTRILSPGRAGLGFKLMVWGHNALFLFSCFCFVYG 186

Query: 197 LASCLLGRTPHLPLVADAAGRQI 209
           LAS +LG+TP+LP +A+AAGRQ+
Sbjct: 187 LASSVLGKTPYLPFIAEAAGRQV 209

[Close]
BLAST of CmaCh11G009280 vs. TrEMBL
Match: A0A067JSM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18045 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.2e-66
Identity = 122/164 (74.39%), Postives = 143/164 (87.20%), Query Frame = 1 

Query: 45  KSVAVRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYR 104
           K    RMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLF QYP LGL FEP++P+L LYR
Sbjct: 46  KLTITRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPQLGLLFEPLIPLLNLYR 105

Query: 105 SIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGF 164
           S+P++SF+AFFALYLGVVRNP+F++YVRFNSMQAVTLDVLL VPLL+ RI +PG  GLGF
Sbjct: 106 SMPYASFVAFFALYLGVVRNPSFSQYVRFNSMQAVTLDVLLVVPLLLARIFNPGRSGLGF 165

Query: 165 QIMVWGHNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
           ++++WGHN +FLFS  CFVY L S +LG+TP+LP V +AAGRQI
Sbjct: 166 KLLIWGHNAVFLFSCFCFVYGLVSSVLGKTPYLPFVGEAAGRQI 209

[Close]
BLAST of CmaCh11G009280 vs. TrEMBL
Match: W9RQC5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005577 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.0e-64
Identity = 131/195 (67.18%), Postives = 157/195 (80.51%), Query Frame = 1 

Query: 15  TAIKATLIPHLSVLKSRHR-SSLPLLSSKPAKSVAVRMSYNPTPATDRLISAVAYTLPFF 74
           +AI  +L+PH  +   + +  + P  S+     + +  S   TPATDRLISAVAY+LPFF
Sbjct: 30  SAISPSLLPHPLLRTHQTKWQAKPKNSTLTGYGIRMMSSSTTTPATDRLISAVAYSLPFF 89

Query: 75  NSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRF 134
           NSLQYGR+LF QYP LGL F+P+LPI+ LYRSIP+SSF+AFFALYLGVVRNP+F+RYVRF
Sbjct: 90  NSLQYGRYLFLQYPKLGLLFDPLLPIISLYRSIPYSSFVAFFALYLGVVRNPSFSRYVRF 149

Query: 135 NSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWGHNGLFLFSVLCFVYSLASCLLGR 194
           NSMQAVTLDVLL +PLL+QRI SPG  GLGF+IMVW H+ LF+FSVLCFVY  AS +LGR
Sbjct: 150 NSMQAVTLDVLLVLPLLVQRIFSPGRSGLGFRIMVWVHSALFVFSVLCFVYGSASSVLGR 209

Query: 195 TPHLPLVADAAGRQI 209
           TP+LP VADAAGRQI
Sbjct: 210 TPYLPFVADAAGRQI 224

[Close]
BLAST of CmaCh11G009280 vs. TrEMBL
Match: A0A0D2UI35_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G239700 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.0e-64
Identity = 128/187 (68.45%), Postives = 150/187 (80.21%), Query Frame = 1 

Query: 22  IPHLSVLKSRHRSSLPLLSSKPAKSVAVRMSYNPTPATDRLISAVAYTLPFFNSLQYGRF 81
           IP LS  K   R     L  KP  ++  RMS NPTPATDRLIS  AY+LPFFNSLQYGR+
Sbjct: 26  IPFLSHPKPNLR-----LPKKPTTTIT-RMSLNPTPATDRLISVAAYSLPFFNSLQYGRY 85

Query: 82  LFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTL 141
           LF QYP LG+ F+PILP L LY+S+P++SF+AFFALYLGVVRNP+F+ YVRFNSMQAVTL
Sbjct: 86  LFIQYPQLGILFDPILPFLSLYKSVPYASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTL 145

Query: 142 DVLLAVPLLIQRILSPGSGGLGFQIMVWGHNGLFLFSVLCFVYSLASCLLGRTPHLPLVA 201
           DVLL VPLL+ RI +PG  GLGF++MVWGH G+F+FS LCFVY + S +LGRTP+LP VA
Sbjct: 146 DVLLVVPLLLTRIFNPGRVGLGFKVMVWGHTGVFVFSCLCFVYGVVSSILGRTPYLPFVA 205

Query: 202 DAAGRQI 209
           DAAGRQI
Sbjct: 206 DAAGRQI 206

[Close]
BLAST of CmaCh11G009280 vs. TAIR10
Match: AT2G47840.1 (AT2G47840.1 Uncharacterised conserved protein ycf60)

HSP 1 Score: 241.9 bits (616), Expect = 3.5e-64
Identity = 116/170 (68.24%), Postives = 141/170 (82.94%), Query Frame = 1 

Query: 40  SSKPAKSVAVRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPI 99
           SS+ A ++  R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLF QYP LGL FEPI PI
Sbjct: 39  SSRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPI 98

Query: 100 LGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPG- 159
           L LYRS+P++SF+AFF LYLGVVRN +F+RYVRFN+MQAVTLDVLLAVP+L+ RIL PG 
Sbjct: 99  LNLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQ 158

Query: 160 SGGLGFQIMVWGHNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
            GG G + M+WGH G+F+FS +CFVY + S LLG+TP++P VADAAGRQ+
Sbjct: 159 GGGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of CmaCh11G009280 vs. TAIR10
Match: AT5G55710.1 (AT5G55710.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-36
Identity = 79/179 (44.13%), Postives = 114/179 (63.69%), Query Frame = 1 

Query: 30  SRHRSSLPLLSSKPAKSVAVRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVL 89
           SR R++  +L SK   SV          A+DR+ISAV Y  PFF+ +QYG+F+ TQY   
Sbjct: 40  SRDRAATLVLQSKGDDSV---------DASDRIISAVCYFYPFFDGIQYGKFIITQYQPF 99

Query: 90  GLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPL 149
            +  +P+ P +  ++S P + F+ F  LY  VVRNPNF+RYVRFN+MQA+ LDVLL  P 
Sbjct: 100 QILIQPLFPAIRAFKSFPFNGFLIFITLYFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPD 159

Query: 150 LIQRILSPGSGGLGFQIMVWGHNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
           L++R  +P   G G  +++   + +FLF ++  +Y  ++CL G TP LPLVA+AA RQ+
Sbjct: 160 LLERSFNP-RDGFGLDVVMSLDSTVFLFLLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]
BLAST of CmaCh11G009280 vs. NCBI nr
Match: gi|449442661|ref|XP_004139099.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 1.6e-90
Identity = 170/208 (81.73%), Postives = 183/208 (87.98%), Query Frame = 1 

Query: 1   MASTFIPLLNLPTHTAIKATLIPHLSVLKSRHRSSLPLLSSKPAKSVAVRMSYNPTPATD 60
           MAST IPLLNL   T+I+A L PH S +KSRH SSLP L SK  K   +RMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSSF+AFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWGHNGLFLFSVL 180
           VVRNP+FN YVRFNSMQAVTLDVLL VPLLIQRILSPG  G+GF+IMVW HNGLF+FSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFVYSLASCLLGRTPHLPLVADAAGRQI 209
           CF+YS+ SCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]
BLAST of CmaCh11G009280 vs. NCBI nr
Match: gi|659085922|ref|XP_008443678.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo])

HSP 1 Score: 339.0 bits (868), Expect = 6.0e-90
Identity = 171/211 (81.04%), Postives = 186/211 (88.15%), Query Frame = 1 

Query: 1   MASTFIPLLNLPTHTAIKATLIPHLSVLKSRHRSSLPLL---SSKPAKSVAVRMSYNPTP 60
           MAST IPLLNL   TAI+A L PH S +KSRH  SLP L   S+K AKS  +RMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLF QYP LG AFEP+LPILGLYRSIPHSSF+AFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWGHNGLFLF 180
           YLGVVRNP+F+ YVRFNSMQAVTLDVLL VPLLIQRILSPG GG+GF+IMVW HNGLF+F
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
           SVLCF+YS+ SCLLGRTPHLP+VADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]
BLAST of CmaCh11G009280 vs. NCBI nr
Match: gi|1009118312|ref|XP_015875794.1| (PREDICTED: protein TIC 20-II, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 268.5 bits (685), Expect = 1.0e-68
Identity = 141/211 (66.82%), Postives = 163/211 (77.25%), Query Frame = 1 

Query: 1   MASTFIPLLNLPTHTAIKATL---IPHLSVLKSRHRSSLPLLSSKPAKSVAVRMSYNPTP 60
           MAS  +  L+L   T  K  L    P  S        SL L      KS   RMSYNPTP
Sbjct: 1   MASIPLVHLSLTPKTLTKPFLGARSPSFSYTLGAIPKSLHLKLKPKTKSTVTRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFAL 120
           ATDRLISAVAYTLPFFNSLQYGRF+F Q+P LGL F+P++P+LGLYRSIP+SSF+AFFAL
Sbjct: 61  ATDRLISAVAYTLPFFNSLQYGRFVFMQFPRLGLLFDPLVPLLGLYRSIPYSSFVAFFAL 120

Query: 121 YLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWGHNGLFLF 180
           YLGVVRNP+F+ YVRFN+MQAVTLDVLL +PLLIQRI +PG  GLGF+IMVWGH+ LF+F
Sbjct: 121 YLGVVRNPSFSHYVRFNAMQAVTLDVLLVLPLLIQRIFTPGRTGLGFRIMVWGHSALFVF 180

Query: 181 SVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
           SV CFVY+L  C+LGRTP+LP VADAAGRQ+
Sbjct: 181 SVFCFVYTLVHCILGRTPYLPFVADAAGRQL 211

[Close]
BLAST of CmaCh11G009280 vs. NCBI nr
Match: gi|566200135|ref|XP_006376041.1| (tic20 family protein [Populus trichocarpa])

HSP 1 Score: 260.8 bits (665), Expect = 2.1e-66
Identity = 132/203 (65.02%), Postives = 157/203 (77.34%), Query Frame = 1 

Query: 17  IKATLIPHLSVLKSRHRSS------LPLLSSKPA-----KSVAVRMSYNPTPATDRLISA 76
           ++ +LIP    L   H  S       P L   P      KS   RMSYNPTPATDRL+SA
Sbjct: 7   LRLSLIPTPKTLSKSHPFSSFNPPLTPFLKFPPKTRLSQKSTVTRMSYNPTPATDRLVSA 66

Query: 77  VAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYRSIPHSSFIAFFALYLGVVRNP 136
           V+YTLPFFNSLQYGRFLFT YP L L  +P++P+L LYRSIP++SF+AFFALYLGVVRNP
Sbjct: 67  VSYTLPFFNSLQYGRFLFTTYPSLALLVDPLIPLLSLYRSIPYASFVAFFALYLGVVRNP 126

Query: 137 NFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGFQIMVWGHNGLFLFSVLCFVYS 196
           +F++YVRFN+MQAVTLDVLL VPLL+ RILSPG  GLGF++MVWGHN LFLFS  CFVY 
Sbjct: 127 SFSQYVRFNAMQAVTLDVLLVVPLLLTRILSPGRAGLGFKLMVWGHNALFLFSCFCFVYG 186

Query: 197 LASCLLGRTPHLPLVADAAGRQI 209
           LAS +LG+TP+LP +A+AAGRQ+
Sbjct: 187 LASSVLGKTPYLPFIAEAAGRQV 209

[Close]
BLAST of CmaCh11G009280 vs. NCBI nr
Match: gi|743930418|ref|XP_011009457.1| (PREDICTED: protein TIC 20-II, chloroplastic [Populus euphratica])

HSP 1 Score: 260.8 bits (665), Expect = 2.1e-66
Identity = 122/164 (74.39%), Postives = 146/164 (89.02%), Query Frame = 1 

Query: 45  KSVAVRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFTQYPVLGLAFEPILPILGLYR 104
           +S   RMSYNPTPATDRL+SAV+YTLPFFNSLQYGRFLFT+YP L L  +P++P+L LYR
Sbjct: 46  QSTVTRMSYNPTPATDRLVSAVSYTLPFFNSLQYGRFLFTKYPSLALLVDPLIPLLSLYR 105

Query: 105 SIPHSSFIAFFALYLGVVRNPNFNRYVRFNSMQAVTLDVLLAVPLLIQRILSPGSGGLGF 164
           SIP++SF+AFFALYLGVVRNP+F++YVRFN+MQAVTLDVLL VPLL+ RILSPG  GLGF
Sbjct: 106 SIPYASFVAFFALYLGVVRNPSFSQYVRFNAMQAVTLDVLLVVPLLLTRILSPGRAGLGF 165

Query: 165 QIMVWGHNGLFLFSVLCFVYSLASCLLGRTPHLPLVADAAGRQI 209
           ++MVWGHN LFLFS  CFVY LAS +LG+TP+LP +A+AAGRQ+
Sbjct: 166 KLMVWGHNALFLFSCFCFVYGLASSVLGKTPYLPFIAEAAGRQV 209

The following BLAST results are available for this feature:
BLAST of CmaCh11G009280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI202_ARATH6.3e-6368.24Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1[more]
TI205_ARATH3.2e-3544.13Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1[more]
YC60L_SYNY37.0e-2235.76Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 ... [more]
YCF60_PYRYE3.0e-0931.21Tic20 family protein Ycf60 OS=Pyropia yezoensis GN=ycf60 PE=3 SV=1[more]
YCF60_PORPU8.9e-0929.59Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1[more]
BLAST of CmaCh11G009280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXS7_CUCSA1.1e-9081.73Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1[more]
A9PA48_POPTR1.4e-6665.02Tic20 family protein OS=Populus trichocarpa GN=POPTR_0013s08250g PE=2 SV=1[more]
A0A067JSM5_JATCU4.2e-6674.39Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18045 PE=4 SV=1[more]
W9RQC5_9ROSA1.0e-6467.18Uncharacterized protein OS=Morus notabilis GN=L484_005577 PE=4 SV=1[more]
A0A0D2UI35_GOSRA3.0e-6468.45Uncharacterized protein OS=Gossypium raimondii GN=B456_010G239700 PE=4 SV=1[more]
BLAST of CmaCh11G009280 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47840.13.5e-6468.24 Uncharacterised conserved protein ycf60[more]
AT5G55710.11.8e-3644.13 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CmaCh11G009280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442661|ref|XP_004139099.1|1.6e-9081.73PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus][more]
gi|659085922|ref|XP_008443678.1|6.0e-9081.04PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo][more]
gi|1009118312|ref|XP_015875794.1|1.0e-6866.82PREDICTED: protein TIC 20-II, chloroplastic [Ziziphus jujuba][more]
gi|566200135|ref|XP_006376041.1|2.1e-6665.02tic20 family protein [Populus trichocarpa][more]
gi|743930418|ref|XP_011009457.1|2.1e-6674.39PREDICTED: protein TIC 20-II, chloroplastic [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0008150 biological_process
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G009280.1CmaCh11G009280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 61..204
score: 6.2
NoneNo IPR availablePANTHERPTHR33510FAMILY NOT NAMEDcoord: 40..208
score: 1.3E
NoneNo IPR availablePANTHERPTHR33510:SF1PROTEIN TIC 20-II, CHLOROPLASTICcoord: 40..208
score: 1.3E