Lsi06G006860 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G006860
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionProtein TIC 20-v, chloroplastic
Locationchr06 : 10828971 .. 10829597 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACCTCCATCCCTCTCCTCAATCTCTCCGCCAAAACCGCCATTAAAGCCGCTCTAGTCCCTCACTCCTCCGTCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCCCACGCGAGCTTCGTCGCCTTCTTCGCGCTTTACTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTGCGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGTTGGTGGTGCCGTTGTTGGTACAGAGGATTCTGAGTCCGGGTCGGAGCGGATTAGGGTTTCAGATCATGGTTTGGGGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTGTATAGCCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

mRNA sequence

ATGGCTTCCACCTCCATCCCTCTCCTCAATCTCTCCGCCAAAACCGCCATTAAAGCCGCTCTAGTCCCTCACTCCTCCGTCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCCCACGCGAGCTTCGTCGCCTTCTTCGCGCTTTACTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTGCGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGTTGGTGGTGCCGTTGTTGGTACAGAGGATTCTGAGTCCGGGTCGGAGCGGATTAGGGTTTCAGATCATGGTTTGGGGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTGTATAGCCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Coding sequence (CDS)

ATGGCTTCCACCTCCATCCCTCTCCTCAATCTCTCCGCCAAAACCGCCATTAAAGCCGCTCTAGTCCCTCACTCCTCCGTCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCCCACGCGAGCTTCGTCGCCTTCTTCGCGCTTTACTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTGCGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGTTGGTGGTGCCGTTGTTGGTACAGAGGATTCTGAGTCCGGGTCGGAGCGGATTAGGGTTTCAGATCATGGTTTGGGGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTGTATAGCCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCCTTGTTGCTGATGCTGCTGGCAGGCAGATTTAG

Protein sequence

MASTSIPLLNLSAKTAIKAALVPHSSVIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPLVADAAGRQI
Homology
[Close]
BLAST of Lsi06G006860 vs. Swiss-Prot
Match: TI202_ARATH (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.0e-61
Identity = 116/169 (68.64%), Postives = 138/169 (81.66%), Query Frame = 1 

Query: 41  SKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 100
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 101 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 160
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 161 SGLGFQIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
            G G + M+WGH G+FVFS +CF+Y +VS LLG+TP++P VADAAGRQ+
Sbjct: 160 GGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of Lsi06G006860 vs. Swiss-Prot
Match: TI205_ARATH (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.1e-34
Identity = 71/151 (47.02%), Postives = 102/151 (67.55%), Query Frame = 1 

Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVF 177
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
            ++  +Y   +CL G TP LPLVA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]
BLAST of Lsi06G006860 vs. Swiss-Prot
Match: YC60L_SYNY3 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-21
Identity = 54/151 (35.76%), Postives = 91/151 (60.26%), Query Frame = 1 

Query: 60  DRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYL 119
           DR  SA+ Y +P  ++  +G FL  Q+PVL +   P++P+L  Y   P ASF+ F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 120 GVVRNPSFSHYVRFNSMQAVTLDVLL-VVPLLVQRILSP-GRSGLGFQIMVWGHNGLFVF 179
            VVRN + SH++RFN+MQA+ + +LL +  L+V  ++ P    GL  + +   +N  F+ 
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGLVTETL---YNFAFLG 130

Query: 180 SVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
           ++ C  + +V  +LGR   +P ++DAA  Q+
Sbjct: 131 ALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]
BLAST of Lsi06G006860 vs. Swiss-Prot
Match: YCF60_PYRYE (Tic20 family protein Ycf60 OS=Pyropia yezoensis GN=ycf60 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-09
Identity = 54/169 (31.95%), Postives = 87/169 (51.48%), Query Frame = 1 

Query: 49  IRMSYNPTPATDRLISAVAYTLPFFNSLQ-YGRFLFAQYPVLGLAI--EPLLPILGLYRS 108
           I  + + T  + RL+S V Y LP F  LQ +G+++   YPV  + +  + +LP+L  Y +
Sbjct: 35  INNTESKTRLSIRLVSTVPYYLPLFEGLQNFGQYVLPDYPVAAIPLYKKIILPMLIFYMN 94

Query: 109 IPHASFVAFFALYLGVVRNPS---FSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGL 168
                 V FFALY  +VRN S       VRFNSMQ++   +L +V  L   +       +
Sbjct: 95  HAILGLVTFFALYYVLVRNKSPIPVHQLVRFNSMQSI---LLFLVGSLFGAVFR--AFPI 154

Query: 169 GFQIMVWG---HNGLFVFSVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
            F+I   G    N +F F +    YS+V  + G+  ++P++++A   QI
Sbjct: 155 EFRISFLGLMVCNMMFWFVLSTITYSIVKAVQGKYSNIPVISEAVRIQI 198

[Close]
BLAST of Lsi06G006860 vs. Swiss-Prot
Match: YCF60_PORPU (Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-09
Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 1 

Query: 49  IRMSYNPTPATDRLISAVAYTLPFFNSLQ-YGRFLFAQYPV--LGLAIEPLLPILGLYRS 108
           I  + + T  + RL+S + Y LP F  LQ +G+++   YPV  + L  + LLP+L  Y +
Sbjct: 35  INTTESKTRLSIRLVSIIPYYLPLFEGLQNFGQYVLPDYPVGAIPLYKKILLPMLIFYMN 94

Query: 109 IPHASFVAFFALYLGVVRNPS---FSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGL 168
                 V FFALY  +VRN S       VRFNSMQ++   +L +V  L   I       +
Sbjct: 95  HAILGLVTFFALYYVLVRNKSPITVHQLVRFNSMQSI---LLFLVGSLFGAIFR--AFPI 154

Query: 169 GFQIMVWG---HNGLFVFSVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
            F+I   G    N +F F +    YS+V  + G+  ++P++++A   QI
Sbjct: 155 EFRISFIGLTVCNMMFWFILSTITYSIVKAIQGKYSNIPVISEAVRIQI 198

[Close]
BLAST of Lsi06G006860 vs. TrEMBL
Match: A0A0A0LXS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.4e-99
Identity = 187/208 (89.90%), Postives = 196/208 (94.23%), Query Frame = 1 

Query: 1   MASTSIPLLNLSAKTAIKAALVPHSSVIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MASTSIPLLNLSAKT+I+AAL PHSS IKSRH SSLPFLPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVFSVL 180
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GF+IMVW HNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSLVSCLLGRTPHLPLVADAAGRQI 209
           CFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]
BLAST of Lsi06G006860 vs. TrEMBL
Match: A9PA48_POPTR (Tic20 family protein OS=Populus trichocarpa GN=POPTR_0013s08250g PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.6e-68
Identity = 135/209 (64.59%), Postives = 164/209 (78.47%), Query Frame = 1 

Query: 11  LSAKTAIKAALVPHSSVIKSRHRSS------LPFLPSKPA-----KSAVIRMSYNPTPAT 70
           +++ + ++ +L+P    +   H  S       PFL   P      KS V RMSYNPTPAT
Sbjct: 1   MASISLLRLSLIPTPKTLSKSHPFSSFNPPLTPFLKFPPKTRLSQKSTVTRMSYNPTPAT 60

Query: 71  DRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYL 130
           DRL+SAV+YTLPFFNSLQYGRFLF  YP L L ++PL+P+L LYRSIP+ASFVAFFALYL
Sbjct: 61  DRLVSAVSYTLPFFNSLQYGRFLFTTYPSLALLVDPLIPLLSLYRSIPYASFVAFFALYL 120

Query: 131 GVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVFSV 190
           GVVRNPSFS YVRFN+MQAVTLDVLLVVPLL+ RILSPGR+GLGF++MVWGHN LF+FS 
Sbjct: 121 GVVRNPSFSQYVRFNAMQAVTLDVLLVVPLLLTRILSPGRAGLGFKLMVWGHNALFLFSC 180

Query: 191 LCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
            CF+Y L S +LG+TP+LP +A+AAGRQ+
Sbjct: 181 FCFVYGLASSVLGKTPYLPFIAEAAGRQV 209

[Close]
BLAST of Lsi06G006860 vs. TrEMBL
Match: A0A0D2UI35_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G239700 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 5.9e-68
Identity = 129/170 (75.88%), Postives = 148/170 (87.06%), Query Frame = 1 

Query: 39  LPSKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLP 98
           LP KP  + + RMS NPTPATDRLIS  AY+LPFFNSLQYGR+LF QYP LG+  +P+LP
Sbjct: 38  LPKKPT-TTITRMSLNPTPATDRLISVAAYSLPFFNSLQYGRYLFIQYPQLGILFDPILP 97

Query: 99  ILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPG 158
            L LY+S+P+ASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+ RI +PG
Sbjct: 98  FLSLYKSVPYASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLLTRIFNPG 157

Query: 159 RSGLGFQIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
           R GLGF++MVWGH G+FVFS LCF+Y +VS +LGRTP+LP VADAAGRQI
Sbjct: 158 RVGLGFKVMVWGHTGVFVFSCLCFVYGVVSSILGRTPYLPFVADAAGRQI 206

[Close]
BLAST of Lsi06G006860 vs. TrEMBL
Match: A0A067JSM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18045 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 7.7e-68
Identity = 140/209 (66.99%), Postives = 163/209 (77.99%), Query Frame = 1 

Query: 5   SIPLLNLSAKTAIKAALVPHSSVIKSRHRSSLPFLPSKPA-----KSAVIRMSYNPTPAT 64
           SI  L L+   ++K   +P    + S    S  FL S        K  + RMSYNPTPAT
Sbjct: 3   SISFLRLAPAASLKT--IPKPYPLSSFVPPSPLFLKSPTGTRLSQKLTITRMSYNPTPAT 62

Query: 65  DRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYL 124
           DRLISAVAYTLPFFNSLQYGRFLFAQYP LGL  EPL+P+L LYRS+P+ASFVAFFALYL
Sbjct: 63  DRLISAVAYTLPFFNSLQYGRFLFAQYPQLGLLFEPLIPLLNLYRSMPYASFVAFFALYL 122

Query: 125 GVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVFSV 184
           GVVRNPSFS YVRFNSMQAVTLDVLLVVPLL+ RI +PGRSGLGF++++WGHN +F+FS 
Sbjct: 123 GVVRNPSFSQYVRFNSMQAVTLDVLLVVPLLLARIFNPGRSGLGFKLLIWGHNAVFLFSC 182

Query: 185 LCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
            CF+Y LVS +LG+TP+LP V +AAGRQI
Sbjct: 183 FCFVYGLVSSVLGKTPYLPFVGEAAGRQI 209

[Close]
BLAST of Lsi06G006860 vs. TrEMBL
Match: A0A061EZC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025129 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 7.7e-68
Identity = 133/194 (68.56%), Postives = 156/194 (80.41%), Query Frame = 1 

Query: 21  LVPHSSVIKSRHRSSLPFLPSKPAK------SAVIRMSYNPTPATDRLISAVAYTLPFFN 80
           L P  S I  +   +L FL    +K        + RMS NPTPATDRLISA AYTLPFFN
Sbjct: 10  LAPKLSPINPKSFPNLTFLNQSKSKVRLARRPTITRMSLNPTPATDRLISAAAYTLPFFN 69

Query: 81  SLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFN 140
           SLQYGR+LF QYP LG   +PL+P+L LY+S+P+ASFVAFFALYLGVVRNPSFSHYVRFN
Sbjct: 70  SLQYGRYLFIQYPQLGTLFDPLIPLLSLYKSVPYASFVAFFALYLGVVRNPSFSHYVRFN 129

Query: 141 SMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVFSVLCFLYSLVSCLLGRT 200
           SMQAVTLDVLL+VPLL+ RIL+PGR+GLG+Q+MVWGH G+FVFS LCF+Y +V  +LGRT
Sbjct: 130 SMQAVTLDVLLIVPLLLTRILNPGRAGLGYQVMVWGHTGVFVFSCLCFVYGVVWSILGRT 189

Query: 201 PHLPLVADAAGRQI 209
           P+LP VADAAGRQ+
Sbjct: 190 PYLPFVADAAGRQV 203

[Close]
BLAST of Lsi06G006860 vs. TAIR10
Match: AT2G47840.1 (AT2G47840.1 Uncharacterised conserved protein ycf60)

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-62
Identity = 116/169 (68.64%), Postives = 138/169 (81.66%), Query Frame = 1 

Query: 41  SKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 100
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 101 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 160
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 161 SGLGFQIMVWGHNGLFVFSVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
            G G + M+WGH G+FVFS +CF+Y +VS LLG+TP++P VADAAGRQ+
Sbjct: 160 GGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of Lsi06G006860 vs. TAIR10
Match: AT5G55710.1 (AT5G55710.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-35
Identity = 71/151 (47.02%), Postives = 102/151 (67.55%), Query Frame = 1 

Query: 58  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 117
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 118 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVF 177
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 178 SVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
            ++  +Y   +CL G TP LPLVA+AA RQ+
Sbjct: 179 LLVSLIYGFSACLFGLTPRLPLVAEAADRQV 208

[Close]
BLAST of Lsi06G006860 vs. NCBI nr
Match: gi|449442661|ref|XP_004139099.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus])

HSP 1 Score: 368.2 bits (944), Expect = 9.2e-99
Identity = 187/208 (89.90%), Postives = 196/208 (94.23%), Query Frame = 1 

Query: 1   MASTSIPLLNLSAKTAIKAALVPHSSVIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 60
           MASTSIPLLNLSAKT+I+AAL PHSS IKSRH SSLPFLPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 120
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 121 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVFSVL 180
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GF+IMVW HNGLFVFSVL
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFSVL 180

Query: 181 CFLYSLVSCLLGRTPHLPLVADAAGRQI 209
           CFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 CFLYSVVSCLLGRTPHLPIVADAAGRQI 208

[Close]
BLAST of Lsi06G006860 vs. NCBI nr
Match: gi|659085922|ref|XP_008443678.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo])

HSP 1 Score: 366.3 bits (939), Expect = 3.5e-98
Identity = 189/211 (89.57%), Postives = 197/211 (93.36%), Query Frame = 1 

Query: 1   MASTSIPLLNLSAKTAIKAALVPHSSVIKSRHRSSLPFLPSKPAKSAV---IRMSYNPTP 60
           MASTSIPLLNLSAKTAI+AAL PHSS IKSRH  SLPFLPSK AKSA    IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 120
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVF 180
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GF+IMVW HNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 181 SVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
           SVLCFLYS+VSCLLGRTPHLP+VADAAGRQI
Sbjct: 181 SVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

[Close]
BLAST of Lsi06G006860 vs. NCBI nr
Match: gi|1009118312|ref|XP_015875794.1| (PREDICTED: protein TIC 20-II, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 280.0 bits (715), Expect = 3.3e-72
Identity = 147/211 (69.67%), Postives = 169/211 (80.09%), Query Frame = 1 

Query: 1   MASTSIPLLNLSAKTAIK---AALVPHSSVIKSRHRSSLPFLPSKPAKSAVIRMSYNPTP 60
           MAS  +  L+L+ KT  K    A  P  S        SL        KS V RMSYNPTP
Sbjct: 1   MASIPLVHLSLTPKTLTKPFLGARSPSFSYTLGAIPKSLHLKLKPKTKSTVTRMSYNPTP 60

Query: 61  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 120
           ATDRLISAVAYTLPFFNSLQYGRF+F Q+P LGL  +PL+P+LGLYRSIP++SFVAFFAL
Sbjct: 61  ATDRLISAVAYTLPFFNSLQYGRFVFMQFPRLGLLFDPLVPLLGLYRSIPYSSFVAFFAL 120

Query: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVF 180
           YLGVVRNPSFSHYVRFN+MQAVTLDVLLV+PLL+QRI +PGR+GLGF+IMVWGH+ LFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNAMQAVTLDVLLVLPLLIQRIFTPGRTGLGFRIMVWGHSALFVF 180

Query: 181 SVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
           SV CF+Y+LV C+LGRTP+LP VADAAGRQ+
Sbjct: 181 SVFCFVYTLVHCILGRTPYLPFVADAAGRQL 211

[Close]
BLAST of Lsi06G006860 vs. NCBI nr
Match: gi|645223097|ref|XP_008218467.1| (PREDICTED: protein TIC 20-II, chloroplastic [Prunus mume])

HSP 1 Score: 269.2 bits (687), Expect = 5.8e-69
Identity = 146/219 (66.67%), Postives = 174/219 (79.45%), Query Frame = 1 

Query: 3   STSIPLLNLSA--KTAIKAALV----PHSSVIKSRHRSSLPFLP--SKPAKSAVIRMSYN 62
           ++SI LL+LSA  KT I  + V    P S++   R  S L  +   SKP  +     SYN
Sbjct: 2   ASSIALLHLSATPKTLIPKSYVCSSFPSSTLAAPRSISFLQLVKRKSKPKSNITCMSSYN 61

Query: 63  -----PTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHA 122
                PTPATDRLISAVAYTLPFFNSLQYGR+LF Q+P LGL  EPL+P+L LYRS+P++
Sbjct: 62  NNTTTPTPATDRLISAVAYTLPFFNSLQYGRYLFFQFPKLGLLFEPLIPLLSLYRSMPYS 121

Query: 123 SFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVW 182
           SFVAFFALYLGVVRNPSFSHYVRFN+MQAVTLDVLLV+PLL+QRI SPGR+GLG+++MVW
Sbjct: 122 SFVAFFALYLGVVRNPSFSHYVRFNAMQAVTLDVLLVLPLLIQRIFSPGRAGLGYKLMVW 181

Query: 183 GHNGLFVFSVLCFLYSLVSCLLGRTPHLPLVADAAGRQI 209
           GHNG+FVFSV CF+YS+VS +LGRTP+LP VADAA RQ+
Sbjct: 182 GHNGIFVFSVFCFVYSVVSSILGRTPYLPFVADAAARQL 220

[Close]
BLAST of Lsi06G006860 vs. NCBI nr
Match: gi|764596660|ref|XP_011466077.1| (PREDICTED: protein TIC 20-II, chloroplastic isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 269.2 bits (687), Expect = 5.8e-69
Identity = 144/206 (69.90%), Postives = 168/206 (81.55%), Query Frame = 1 

Query: 5   SIPLLNLSAKTAIKAALVPH--SSVIKSRHRSSLPFLPSKPAKSAVIRMSYNPTPATDRL 64
           SI LL+  + T  KA  +P   +S I +R   SL F P   +K+     S  PTPATDRL
Sbjct: 3   SIHLLHGLSPTTPKALALPRFRTSTIATR---SLSF-PKPKSKTITCMSSGTPTPATDRL 62

Query: 65  ISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLGVV 124
           ISAV+YTLPFFNSLQYGR+LF Q+P LGL  EPLLP+LGLYRSIP++SFVAFFALYLGVV
Sbjct: 63  ISAVSYTLPFFNSLQYGRYLFLQFPKLGLLFEPLLPLLGLYRSIPYSSFVAFFALYLGVV 122

Query: 125 RNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFQIMVWGHNGLFVFSVLCF 184
           RNPSFSHY RFN+MQAVTLDVLLV+PLLVQRI SPG++GLGF++MVWGHNG+FVFSV CF
Sbjct: 123 RNPSFSHYARFNAMQAVTLDVLLVLPLLVQRIFSPGQAGLGFKLMVWGHNGIFVFSVFCF 182

Query: 185 LYSLVSCLLGRTPHLPLVADAAGRQI 209
           +Y LVS +LGRTP+LP VADAAGRQ+
Sbjct: 183 VYGLVSSVLGRTPYLPFVADAAGRQL 204

The following BLAST results are available for this feature:
BLAST of Lsi06G006860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI202_ARATH2.0e-6168.64Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1[more]
TI205_ARATH6.1e-3447.02Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1[more]
YC60L_SYNY32.7e-2135.76Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 ... [more]
YCF60_PYRYE2.3e-0931.95Tic20 family protein Ycf60 OS=Pyropia yezoensis GN=ycf60 PE=3 SV=1[more]
YCF60_PORPU3.0e-0933.14Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1[more]
BLAST of Lsi06G006860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXS7_CUCSA6.4e-9989.90Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1[more]
A9PA48_POPTR2.6e-6864.59Tic20 family protein OS=Populus trichocarpa GN=POPTR_0013s08250g PE=2 SV=1[more]
A0A0D2UI35_GOSRA5.9e-6875.88Uncharacterized protein OS=Gossypium raimondii GN=B456_010G239700 PE=4 SV=1[more]
A0A067JSM5_JATCU7.7e-6866.99Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18045 PE=4 SV=1[more]
A0A061EZC4_THECC7.7e-6868.56Uncharacterized protein OS=Theobroma cacao GN=TCM_025129 PE=4 SV=1[more]
BLAST of Lsi06G006860 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47840.11.1e-6268.64 Uncharacterised conserved protein ycf60[more]
AT5G55710.13.4e-3547.02 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Lsi06G006860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442661|ref|XP_004139099.1|9.2e-9989.90PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus][more]
gi|659085922|ref|XP_008443678.1|3.5e-9889.57PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo][more]
gi|1009118312|ref|XP_015875794.1|3.3e-7269.67PREDICTED: protein TIC 20-II, chloroplastic [Ziziphus jujuba][more]
gi|645223097|ref|XP_008218467.1|5.8e-6966.67PREDICTED: protein TIC 20-II, chloroplastic [Prunus mume][more]
gi|764596660|ref|XP_011466077.1|5.8e-6969.90PREDICTED: protein TIC 20-II, chloroplastic isoform X1 [Fragaria vesca subsp. ve... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010207 photosystem II assembly
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G006860.1Lsi06G006860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 61..204
score: 8.8
NoneNo IPR availablePANTHERPTHR33510FAMILY NOT NAMEDcoord: 40..208
score: 2.3E
NoneNo IPR availablePANTHERPTHR33510:SF1PROTEIN TIC 20-II, CHLOROPLASTICcoord: 40..208
score: 2.3E