CU110981 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU110981
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 26188767 .. 26189034 (+)
Sequence length269
The following sequences are available for this feature:

transcribed_cluster sequence

GGAATGGAACTAAAAAGCCGTCGGAAAAGAGCATCGTTTCATCTTCTTCGTCCTCACTCTCCTACAAAGAAATGGCTTCCACTTCCATCCCCCTCCTCAATCTCTCCGCCAAAACCTCCATTAGAGCAGCTCTATTCCCTCACTCCTCCGCCATCAAATCTCGCCACCATTTTTCTCTCCCTTTTCTCCCCTCTAAGTCCCCAAAATTCACCCCCATTCGCATGTCCTACAACCCTACTCCAAGCCACCGACCGCCTCATCTCCGCTGT
BLAST of CU110981 vs. TrEMBL
Match: A0A0A0LXS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.2e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 3

Query: 72  MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHFSLPFLPSKSPKFTPIRMSYNPTPS 131
           MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHH SLPFLPSKSPKFTPIRMSYNPTP+
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPA 58

Query: 132 191
           
Sbjct: 61  58

Query: 192 246
           
Sbjct: 121 58

BLAST of CU110981 vs. NCBI nr
Match: gi|449442661|ref|XP_004139099.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 3

Query: 72  MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHFSLPFLPSKSPKFTPIRMSYNPTPS 131
           MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHH SLPFLPSKSPKFTPIRMSYNPTP+
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPA 58

Query: 132 191
           
Sbjct: 61  58

Query: 192 246
           
Sbjct: 121 58

BLAST of CU110981 vs. NCBI nr
Match: gi|659085922|ref|XP_008443678.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-18
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 3

Query: 72  MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHFSLPFLPS---KSPKFTPIRMSYNPTP 131
           MASTSIPLLNLSAKT+IRAALFPHSS IKSRHHFSLPFLPS   KS K TPIRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 132 S 191
           +
Sbjct: 61  A 61

Query: 192 246
           
Sbjct: 121 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LXS7_CUCSA7.2e-2396.55Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449442661|ref|XP_004139099.1|1.1e-2196.55PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus][more]
gi|659085922|ref|XP_008443678.1|2.6e-1886.89PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G654890Csa1G654890gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0035299G0035299EST
G0137610G0137610EST
H0105897H0105897EST
H0115564H0115564EST