CU117785 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU117785
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTic20 family protein Ycf60
LocationChr1 : 26189310 .. 26190350 (+)
Sequence length279
The following sequences are available for this feature:

transcribed_cluster sequence

AAGAAGCGGGGATAGGGTTCAAGATAAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTGTGGTTTCTTGTCTTCTCGGTCGAACCCCACACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAGCTTCCAGCTAGGTAGGTTTGTAGCAACTAATGGTGGAGGGAAGCAAGCTGAAGTGAACATTGTTCCACTAGTATAAAGTATGCACCTCAATCTGGAGGTTGGAGGTTAAACCATCTCGCCAAA
BLAST of CU117785 vs. Swiss-Prot
Match: TI202_ARATH (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-11
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1

Query: 10  G*GSR*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 69
           G G + M+W H G+FVFS +CF+Y VVS LLG+TP++P VADAAGRQ+
Sbjct: 161 GFGMKAMMWGHTGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

Query: 70  129
           
Sbjct: 221 208

Query: 130 154
           
Sbjct: 281 208

BLAST of CU117785 vs. TrEMBL
Match: A0A0A0LXS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query: 4   KRG*GSR*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 63
           + G G + MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI
Sbjct: 159 RSGIGFKIMVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 208

Query: 64  123
           
Sbjct: 219 208

Query: 124 154
           
Sbjct: 279 208

BLAST of CU117785 vs. TrEMBL
Match: M5W7U9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022924mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-11
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query: 4   KRG*GSR*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 63
           + G G + MVW HNG+FVFSV CF+YSVVS +LGRTP+LP VADAA RQ+
Sbjct: 101 RAGLGYKLMVWGHNGIFVFSVFCFVYSVVSSILGRTPYLPFVADAAARQL 150

Query: 64  123
           
Sbjct: 161 150

Query: 124 154
           
Sbjct: 221 150

BLAST of CU117785 vs. TrEMBL
Match: A0A0D2UI35_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G239700 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1

Query: 10  G*GSR*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 69
           G G + MVW H G+FVFS LCF+Y VVS +LGRTP+LP VADAAGRQI
Sbjct: 159 GLGFKVMVWGHTGVFVFSCLCFVYGVVSSILGRTPYLPFVADAAGRQI 206

Query: 70  129
           
Sbjct: 219 206

Query: 130 154
           
Sbjct: 279 206

BLAST of CU117785 vs. TrEMBL
Match: D7LHC8_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483969 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1

Query: 10  G*GSR*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 69
           G G + M+W H G+FVFS +CF+Y VVSCLLG+TP++P VADAAGRQ+
Sbjct: 162 GFGMKAMMWGHTGVFVFSSMCFVYGVVSCLLGKTPYIPFVADAAGRQL 209

Query: 70  129
           
Sbjct: 222 209

Query: 130 154
           
Sbjct: 282 209

BLAST of CU117785 vs. TrEMBL
Match: G7KRK7_MEDTR (Tic20, putative OS=Medicago truncatula GN=MTR_7g080300 PE=4 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1

Query: 10  G*GSR*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 69
           G G + +VWSHN +FVFS+LCF+YS + CLLGRTP+LP VADAA RQI
Sbjct: 162 GLGFKILVWSHNVVFVFSILCFVYSALCCLLGRTPYLPFVADAAARQI 209

Query: 70  129
           
Sbjct: 222 209

Query: 130 154
           
Sbjct: 282 209

BLAST of CU117785 vs. NCBI nr
Match: gi|449442661|ref|XP_004139099.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 5.2e-17
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query: 4   KRG*GSR*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 63
           + G G + MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI
Sbjct: 159 RSGIGFKIMVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 208

Query: 64  123
           
Sbjct: 219 208

Query: 124 154
           
Sbjct: 279 208

BLAST of CU117785 vs. NCBI nr
Match: gi|659085922|ref|XP_008443678.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1

Query: 10  G*GSR*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 69
           G G + MVWSHNGLFVFSVLCFLYS+VSCLLGRTPHLPIVADAAGRQI
Sbjct: 164 GIGFKIMVWSHNGLFVFSVLCFLYSMVSCLLGRTPHLPIVADAAGRQI 211

Query: 70  129
           
Sbjct: 224 211

Query: 130 154
           
Sbjct: 284 211

BLAST of CU117785 vs. NCBI nr
Match: gi|502105641|ref|XP_004492852.1| (PREDICTED: protein TIC 20-II, chloroplastic [Cicer arietinum])

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-12
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1

Query: 22  R*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 81
           R M+W+HN +F+FS+LCFLYSV+SCLLGRTP+LP VADAA RQI
Sbjct: 166 RVMIWAHNAVFIFSILCFLYSVLSCLLGRTPYLPFVADAAARQI 209

Query: 82  141
           
Sbjct: 226 209

Query: 142 154
           
Sbjct: 286 209

BLAST of CU117785 vs. NCBI nr
Match: gi|1012119328|ref|XP_015961943.1| (PREDICTED: protein TIC 20-II, chloroplastic [Arachis duranensis])

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-12
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query: 4   KRG*GSR*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 63
           + G G + MVWSHN LFVFSV+CF+YSVV+C++GRTP LP VADAA RQI
Sbjct: 160 RTGLGFQVMVWSHNALFVFSVVCFVYSVVTCVVGRTPTLPFVADAASRQI 209

Query: 64  123
           
Sbjct: 220 209

Query: 124 154
           
Sbjct: 280 209

BLAST of CU117785 vs. NCBI nr
Match: gi|645223097|ref|XP_008218467.1| (PREDICTED: protein TIC 20-II, chloroplastic [Prunus mume])

HSP 1 Score: 79.0 bits (193), Expect = 5.0e-12
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query: 4   KRG*GSR*MVWSHNGLFVFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 63
           + G G + MVW HNG+FVFSV CF+YSVVS +LGRTP+LP VADAA RQ+
Sbjct: 171 RAGLGYKLMVWGHNGIFVFSVFCFVYSVVSSILGRTPYLPFVADAAARQL 220

Query: 64  123
           
Sbjct: 231 220

Query: 124 154
           
Sbjct: 291 220

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TI202_ARATH1.1e-1162.50Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana GN=TIC20-II PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LXS7_CUCSA3.1e-1688.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654890 PE=4 SV=1[more]
M5W7U9_PRUPE3.0e-1168.00Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022924mg PE=4 S... [more]
A0A0D2UI35_GOSRA1.1e-1070.83Uncharacterized protein OS=Gossypium raimondii GN=B456_010G239700 PE=4 SV=1[more]
D7LHC8_ARALL1.1e-1064.58Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
G7KRK7_MEDTR1.1e-1068.75Tic20, putative OS=Medicago truncatula GN=MTR_7g080300 PE=4 SV=2[more]
Match NameE-valueIdentityDescription
gi|449442661|ref|XP_004139099.1|5.2e-1788.00PREDICTED: protein TIC 20-II, chloroplastic [Cucumis sativus][more]
gi|659085922|ref|XP_008443678.1|1.5e-1689.58PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo][more]
gi|502105641|ref|XP_004492852.1|2.2e-1275.00PREDICTED: protein TIC 20-II, chloroplastic [Cicer arietinum][more]
gi|1012119328|ref|XP_015961943.1|3.8e-1270.00PREDICTED: protein TIC 20-II, chloroplastic [Arachis duranensis][more]
gi|645223097|ref|XP_008218467.1|5.0e-1268.00PREDICTED: protein TIC 20-II, chloroplastic [Prunus mume][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G654890Csa1G654890gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0125519G0125519EST
H0079030H0079030EST