Csa1G532270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G532270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 18767829 .. 18769587 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGTATTGAAAATAGAAGGTGAGGAGAGGTAGAGATATATATTAATGGCTTCTTCTTCTTCTCCTCCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATTCTCCTCCTCCTCGCAACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAGTTTCGAGCAACAAGAGTAAGAACGAAACCCTTTCTAGTTCTTCCTTCTTCACCTTTATTCATTTCTCATCGTTTAATTTAAATTTGTCATAACCTTTTTATTTAATGTTTTACGATTTGATAGTTTAACATAATAGTATTAAAGAACTCGATATCTATATCAATTTTCACGAAGATAAAACTTTTGCAATGTCGTTCTTGGTTTATATAATAATGATCGAAGTTGTCAAATTTGTTGTGCCAATCCGTACAAATGATAAAAAATGTCTTACCTCCCAATTTAATCTTTACAGGGAAAATAATATTTTGGCTCTTTTGTATTCCAAGTTTCCTGAAGTGTTTTCAATCGTCTAAATTTACTCTTTTTATATTACTTTCAATATATTTTAAATTTAATCATTCAAAAATTAATAATTTTCTAGAGTGTTATCAAATAATAATAAATTTTGTAAAATAAATAAATTATCATATATATGTGAGTTCAAAAAATTTATAAAAGAAATCTAAATAGAGATAATATTTTTATATTTGGAAAAATGTGGTTATATAATCAACAAAAGATACTATTATTTTAAAGATTTACAGATGGTATTAATAAAAAATATTCCAAAGTACATAAAATAAAATTCAAAATTAAATTAAAGTAATAGGTAATTTAAACGATTATATTAATTTTAACATGGTGTCAAAATAGAAGGTCTTTGAGTAAGTGTCATATATCCTCTTTATATATATATATATAATTTAACCCTAAGGCCTTATGTTTAATTTTTCAAGCTTTACTGATTTAACCCTAAGGCCTTATGTTTAATTTTTCAAGCTTTACAAATGATCAAACTTATTTGACGATGGGTTTATTGGTGTAGTTTAGTACATAGTTAACTATATAGTTTTATGGTTAATTAAATTTTTTTATATACGTAGGAAATGACAAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTATCTGTAAACAAGGGTATGTTTAACCAAAGGTTCTTCAACGGTTTCGAATCTCTCACTCACTCCATACAAATATAGATTATTACTCAATGGATAAAACTAATTGGTATATCGTTGAATGCGTGAGATAGAAATTATTATTTATTTATTTTTTTAATGACTTAGATCCCGAGTCTCTAACTAAATTATTATTATTTAGGTTATTAGTGTTTTTATCTATTCAAATAACATAACAAGTACGAGAATGGTGAAGTTTCATCCATTCTCATAAACATAATTAAGTATGAAAGTTTAGCTCAACATTGAGGGTTATATTTCGTCATATATACTTACCATTGTAGCAAACCCACCTAATAAAAATTTGTTGTTATAATTAATCATGATTTGTTGATTTTTGCAGGGAACAACAAGGAATTGGATGGTTAATGAGAATTAGAGAAGATAATGGCATTATGGTCAAGTGGTGGAAGCAACTATTTGATGTGTGTTGAGATAGTTAATACAAGAAATAAAATTTTTCACACACTATATGATATTTTTGCATATCCCTTAATTTTATGTATCAAATTTAAAAGGATATATATTGTAACTATTT

mRNA sequence

ATGGCTTCTTCTTCTTCTCCTCCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATTCTCCTCCTCCTCGCAACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAGTTTCGAGCAACAAGAGAAATGACAAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTATCTGTAAACAAGGGGAACAACAAGGAATTGGATGGTTAA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCTCCTCCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATTCTCCTCCTCCTCGCAACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAGTTTCGAGCAACAAGAGAAATGACAAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTATCTGTAAACAAGGGGAACAACAAGGAATTGGATGGTTAA

Protein sequence

MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDPHHPLSVNKGNNKELDG*
Homology
[Close]
BLAST of Csa1G532270 vs. TrEMBL
Match: A0A0A0LXN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.0e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60
          MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR
Sbjct: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLSVNKGNNKELDG 84
          ANHRHDPHHPLSVNKGNNKELDG
Sbjct: 61 ANHRHDPHHPLSVNKGNNKELDG 83

[Close]
BLAST of Csa1G532270 vs. NCBI nr
Match: gi|700210723|gb|KGN65819.1| (hypothetical protein Csa_1G532270 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60
          MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR
Sbjct: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLSVNKGNNKELDG 84
          ANHRHDPHHPLSVNKGNNKELDG
Sbjct: 61 ANHRHDPHHPLSVNKGNNKELDG 83

[Close]
BLAST of Csa1G532270 vs. NCBI nr
Match: gi|659115050|ref|XP_008457363.1| (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-32
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 1 

Query: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60
          MASSSS  PRLSFYFSFL+LLLL TAMVASAARHAP IP+SSN+RND+ MIGLQDYGDAR
Sbjct: 1  MASSSSS-PRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLSVNKGNNKELDG 84
          ANHRHDPHHPL+VNKGN KELDG
Sbjct: 61 ANHRHDPHHPLTVNKGNKKELDG 82

The following BLAST results are available for this feature:
BLAST of Csa1G532270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXN0_CUCSA8.0e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532270 PE=4 SV=1[more]
BLAST of Csa1G532270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210723|gb|KGN65819.1|1.1e-39100.00hypothetical protein Csa_1G532270 [Cucumis sativus][more]
gi|659115050|ref|XP_008457363.1|2.3e-3286.75PREDICTED: protein PSY1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU109219cucumber EST collection version 3.0transcribed_cluster
CU124013cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G532270.1Csa1G532270.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU109219CU109219transcribed_cluster
CU124013CU124013transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G532270MELO3C020539Melon (DHL92) v3.5.1cumeB028
Csa1G532270ClCG03G000650Watermelon (Charleston Gray)cuwcgB047
Csa1G532270Lsi02G012730Bottle gourd (USVL1VR-Ls)culsiB030
Csa1G532270MELO3C020539.2Melon (DHL92) v3.6.1cumedB023
Csa1G532270Cla97C03G051450Watermelon (97103) v2cuwmbB043
Csa1G532270Bhi08G000410Wax gourdcuwgoB048
Csa1G532270CSPI01G23990Wild cucumber (PI 183967)cpicuB001
Csa1G532270CmoCh01G007030Cucurbita moschata (Rifu)cmocuB416
Csa1G532270Cp4.1LG02g11870Cucurbita pepo (Zucchini)cpecuB529
Csa1G532270CsGy1G023480Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G532270Silver-seed gourdcarcuB0171
Csa1G532270Silver-seed gourdcarcuB0412
Csa1G532270Silver-seed gourdcarcuB0550
Csa1G532270Silver-seed gourdcarcuB0680
Csa1G532270Silver-seed gourdcarcuB1010
Csa1G532270Watermelon (97103) v2cuwmbB015
Csa1G532270Cucumber (Chinese Long) v2cucuB020
Csa1G532270Cucumber (Gy14) v1cgycuB267
Csa1G532270Cucurbita maxima (Rimu)cmacuB219
Csa1G532270Cucurbita maxima (Rimu)cmacuB234
Csa1G532270Cucurbita maxima (Rimu)cmacuB427
Csa1G532270Cucurbita maxima (Rimu)cmacuB688
Csa1G532270Cucurbita maxima (Rimu)cmacuB689
Csa1G532270Cucurbita moschata (Rifu)cmocuB204
Csa1G532270Cucurbita moschata (Rifu)cmocuB220
Csa1G532270Cucurbita moschata (Rifu)cmocuB677
Csa1G532270Cucurbita moschata (Rifu)cmocuB678
Csa1G532270Melon (DHL92) v3.5.1cumeB064
Csa1G532270Watermelon (Charleston Gray)cuwcgB004
Csa1G532270Watermelon (97103) v1cuwmB004
Csa1G532270Watermelon (97103) v1cuwmB021
Csa1G532270Cucurbita pepo (Zucchini)cpecuB382
Csa1G532270Cucurbita pepo (Zucchini)cpecuB507
Csa1G532270Melon (DHL92) v3.6.1cumedB058