CmoCh01G007030 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G007030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr01 : 3603191 .. 3604519 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCGATCTTCCCTTTACTTCTCTCTCCTCTTTTTCCTGCTCTCTACTGCCGCCATTGTTGCACCTTCTGAAGCTCGCAACATACCTGCAAGTCCAATTGCAAGCACAGAAAGTAAGAATAAAACCCTCTTCTTCTTCGTAACCATTTTTGTTCGTTATGAATTTTCTAAGTGTTTAAAATATACATTTTAATGTGATTGCGAAATTTAGATTTTCGATAGTTTGAATGAGTTTTATGATTGGAAATGTTACAGGAGAGATGATTGGATTACGAGACTATGGTGATGCTCGTGCCAATCATCGACACGAACCCCACCATCCTCTTGGTGTCGAAGGTAAGATTATAGTATTCATAAATTATTATTTGAGAGTTGGGACGATATTTATCTCGTAATTTACTCTATTGTATATGATAGTTAAAAACAGACAACCACATTAAATAATTTTTCGATAATATTTTATTAAGTGGTTCGTGTTTTTAGTTGGATTTATGTTTATGATGAAAGTGACTTATTTATTGATTAATAATGATTTTATTTAGTTTGAATAACTATAAATTTATCTTAATTCATAAATTTTTATTTATTTCAACTAAACTAACTCAGATAAATTTATAATTGAATTCAAATCAATACAAGTTGGATTGGGTTGATCAAACTTTCAGGCTATTATGTGTGATTCCGCATTGATTGGAGAGGGAAATGAAACATTTCTTATCACGATGTGGAAACTTCTCCCTATTAGACGCGTTTTAAAACCATAAGACAAACGACAATGGGTAATGAACCAAAGTGGGCAATATCTACTAATGGTAGATTTGAGCCATTACAAATGATATCGATATCAGATCTAGACACCAGGTGGTGTGCCATCGATGATGCTGGGTCTCCAATGGGGTGAATTGTGAGATCCCACATAAACATGAAGACAATATCTACCAGCGTGGGCTTGAACGGTTACATTAGATCTTCCTATTCCAATAGTTTGCTCGATTCAATTTGTATGAATGATTATGTTTGTAGGTACTCGTTGTTGTTGTTCTTATTATTGTTCGTTAATTTTGGTAGGATATAAGAAGGAGTTGGATGATTGATGAGAAGCGAATGGCAAGCAAATCATTGGTAAAATGATGGTGGCAACTACTCGATGAGATTAGTACAACAATAAAAACATTATGATATCTCTTTGCATCCATGCCCTTTATCTATGTATCAAACTTAAAAGGATATTGTTACTATTAAAGTTTCTATTATACTCGTCATGCCCAAAACATATCGAGATCTAATGTAACTAGTTTACATTCAGACATATTTAGTAGCGTTT

mRNA sequence

ATGGCTTCTCGATCTTCCCTTTACTTCTCTCTCCTCTTTTTCCTGCTCTCTACTGCCGCCATTGTTGCACCTTCTGAAGCTCGCAACATACCTGCAAGTCCAATTGCAAGCACAGAAAGAGAGATGATTGGATTACGAGACTATGGTGATGCTCGTGCCAATCATCGACACGAACCCCACCATCCTCTTGGTGTCGAAGGATATAAGAAGGAGTTGGATGATTGATGAGAAGCGAATGGCAAGCAAATCATTGGTAAAATGATGGTGGCAACTACTCGATGAGATTAGTACAACAATAAAAACATTATGATATCTCTTTGCATCCATGCCCTTTATCTATGTATCAAACTTAAAAGGATATTGTTACTATTAAAGTTTCTATTATACTCGTCATGCCCAAAACATATCGAGATCTAATGTAACTAGTTTACATTCAGACATATTTAGTAGCGTTT

Coding sequence (CDS)

ATGGCTTCTCGATCTTCCCTTTACTTCTCTCTCCTCTTTTTCCTGCTCTCTACTGCCGCCATTGTTGCACCTTCTGAAGCTCGCAACATACCTGCAAGTCCAATTGCAAGCACAGAAAGAGAGATGATTGGATTACGAGACTATGGTGATGCTCGTGCCAATCATCGACACGAACCCCACCATCCTCTTGGTGTCGAAGGATATAAGAAGGAGTTGGATGATTGA
Homology
[Close]
BLAST of CmoCh01G007030 vs. TrEMBL
Match: A0A0A0LXN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-12
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 

Query: 4  RSSLYFSLLFFLLSTAAIVAPSEARNIPASPIAST---EREMIGLRDYGDARANHRHEPH 63
          R S YFS L  LL   A+VA S AR+ PA P++S    ++EMIGL+DYGDARANHRH+PH
Sbjct: 10 RLSFYFSFLILLLLATAMVA-SAARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDPH 69

Query: 64 HPLGV-EGYKKELD 74
          HPL V +G  KELD
Sbjct: 70 HPLSVNKGNNKELD 82

[Close]
BLAST of CmoCh01G007030 vs. NCBI nr
Match: gi|659115050|ref|XP_008457363.1| (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 8.0e-13
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 1 

Query: 4  RSSLYFSLLFFLLSTAAIVAPSEARNIPASPIASTERE---MIGLRDYGDARANHRHEPH 63
          R S YFS L  LL T A+VA S AR+ P  PI+S ER    MIGL+DYGDARANHRH+PH
Sbjct: 9  RLSFYFSFLLLLLLTTAMVA-SAARHAPPIPISSNERNDEGMIGLQDYGDARANHRHDPH 68

Query: 64 HPLGV-EGYKKELD 74
          HPL V +G KKELD
Sbjct: 69 HPLTVNKGNKKELD 81

[Close]
BLAST of CmoCh01G007030 vs. NCBI nr
Match: gi|700210723|gb|KGN65819.1| (hypothetical protein Csa_1G532270 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-12
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1 

Query: 4  RSSLYFSLLFFLLSTAAIVAPSEARNIPASPIAST---EREMIGLRDYGDARANHRHEPH 63
          R S YFS L  LL   A+VA S AR+ PA P++S    ++EMIGL+DYGDARANHRH+PH
Sbjct: 10 RLSFYFSFLILLLLATAMVA-SAARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDPH 69

Query: 64 HPLGV-EGYKKELD 74
          HPL V +G  KELD
Sbjct: 70 HPLSVNKGNNKELD 82

The following BLAST results are available for this feature:
BLAST of CmoCh01G007030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G007030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXN0_CUCSA2.1e-1260.81Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532270 PE=4 SV=1[more]
BLAST of CmoCh01G007030 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G007030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115050|ref|XP_008457363.1|8.0e-1364.86PREDICTED: protein PSY1-like [Cucumis melo][more]
gi|700210723|gb|KGN65819.1|3.1e-1260.81hypothetical protein Csa_1G532270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G007030.1CmoCh01G007030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G007030Csa1G532270Cucumber (Chinese Long) v2cmocuB416
CmoCh01G007030MELO3C020539Melon (DHL92) v3.5.1cmomeB382
CmoCh01G007030ClCG03G000650Watermelon (Charleston Gray)cmowcgB403
CmoCh01G007030CSPI01G23990Wild cucumber (PI 183967)cmocpiB420
CmoCh01G007030Lsi02G012730Bottle gourd (USVL1VR-Ls)cmolsiB403
CmoCh01G007030Cp4.1LG02g11870Cucurbita pepo (Zucchini)cmocpeB446
CmoCh01G007030MELO3C020539.2Melon (DHL92) v3.6.1cmomedB439
CmoCh01G007030CsaV3_1G036300Cucumber (Chinese Long) v3cmocucB0500
CmoCh01G007030Cla97C03G051450Watermelon (97103) v2cmowmbB448
CmoCh01G007030Bhi08G000410Wax gourdcmowgoB0590
CmoCh01G007030CsGy1G023480Cucumber (Gy14) v2cgybcmoB098
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G007030Cucumber (Chinese Long) v3cmocucB0538
CmoCh01G007030Cucumber (Chinese Long) v3cmocucB0550
CmoCh01G007030Watermelon (97103) v2cmowmbB424
CmoCh01G007030Watermelon (97103) v2cmowmbB443
CmoCh01G007030Watermelon (97103) v2cmowmbB451
CmoCh01G007030Wax gourdcmowgoB0575
CmoCh01G007030Wax gourdcmowgoB0579
CmoCh01G007030Cucurbita moschata (Rifu)cmocmoB173
CmoCh01G007030Cucurbita moschata (Rifu)cmocmoB205
CmoCh01G007030Cucurbita moschata (Rifu)cmocmoB359
CmoCh01G007030Cucurbita moschata (Rifu)cmocmoB375
CmoCh01G007030Cucumber (Gy14) v1cgycmoB0502
CmoCh01G007030Cucurbita maxima (Rimu)cmacmoB226
CmoCh01G007030Cucurbita maxima (Rimu)cmacmoB259
CmoCh01G007030Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G007030Cucurbita maxima (Rimu)cmacmoB815
CmoCh01G007030Wild cucumber (PI 183967)cmocpiB452
CmoCh01G007030Cucumber (Chinese Long) v2cmocuB449
CmoCh01G007030Melon (DHL92) v3.5.1cmomeB412
CmoCh01G007030Watermelon (Charleston Gray)cmowcgB382
CmoCh01G007030Watermelon (Charleston Gray)cmowcgB398
CmoCh01G007030Watermelon (97103) v1cmowmB450
CmoCh01G007030Watermelon (97103) v1cmowmB408
CmoCh01G007030Watermelon (97103) v1cmowmB422
CmoCh01G007030Cucurbita pepo (Zucchini)cmocpeB441
CmoCh01G007030Bottle gourd (USVL1VR-Ls)cmolsiB384
CmoCh01G007030Bottle gourd (USVL1VR-Ls)cmolsiB391
CmoCh01G007030Bottle gourd (USVL1VR-Ls)cmolsiB408
CmoCh01G007030Cucumber (Gy14) v2cgybcmoB345
CmoCh01G007030Cucumber (Gy14) v2cgybcmoB480
CmoCh01G007030Melon (DHL92) v3.6.1cmomedB470
CmoCh01G007030Silver-seed gourdcarcmoB0217
CmoCh01G007030Silver-seed gourdcarcmoB0518
CmoCh01G007030Silver-seed gourdcarcmoB0708
CmoCh01G007030Silver-seed gourdcarcmoB1337