Cla97C03G051450 (gene) Watermelon (97103) v2

Overview
NameCla97C03G051450
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionprotein PSY1-like
LocationCla97Chr03 : 610175 .. 612091 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCCTTCTCGACTTTCCATTTACTTCTCTTTCCTCTTTCTCCTCCTTGTGGCTACCGCCATGGTAGCCTCTGCCACTCGCTATCCACCCGCAAATCCAATTGCAAGCAAAGAGAGTAAGAACGAAACTCTTTCTTCTTCTTCACCTTATTCATTTCTTTTCGTCAAATATGTCGTAACTGCTCTACTTAAATTTGTACGTTTTAACAGTTTAGCATTGTATAAGGGAGATCGATATCGGTCTCTTGAAGTCATATTTTTCTTATTTTATATAAAAATAGTCTAATTTGTCAAAATTTTGTAGCTGATCGAAGGAGAGAATGCTGATATAATATGCATACAAATGATCAAATATGCCTAACCTCTCAAGTCTCAACTTAAGTTTTCGTAGTTTTATCAATACTTTTAGGGTAAATTTTGGTCCTTGGACGTCTTTGGGTTTCATTTCATCTTCCTCCATTTATTTTCAAATGTCTAATACTACTCTTTATAATACTTTCGACAAATTTTAAATTTAATCCTTCAAAAATTATATTTATCGAAATTGTTACCTATTGATAATAATTTTCATACAATAAATAACTCTATACGTTCATGTGCTTACAAAATTTATAAAAGAAATTTTACTAAGACTAAATTTTTGTTTGAAAAAATCAACAATATAACTAATAGCAAGGACTATTCCTGAGAGCATAAAGACAACAATTTAAAAATTTACAGACTAAAATAAAATGAAATTTTTGAGTTTCAAACTCTAAAAGTGTCATTTTTCCTTTCATTCCTTTTCTATGATAATCAAGTCTTAGGCCTTATGTTTAATTTTCAAGCTTTGTAAATGATTAAATTTATTTGGTGGGTTTATTGGTAGTTTAATAGCTAATTAGTTTTGTGATTACAAATGTTTGTAGATAATGAAGGCATGATTGGCTTACAAGACTACGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAAGGGTAAGCCTAACCATACATTAATAATCCATACTAACATTCCTAATTAACAAATTTAAATTCTAACACCTTGGCTAATTAAGGGCCAAATTAGTAATTTTTCTTACATCTCCTAGATAAAGAGATTTCAATACTAGAAGAAAAACATCTCTACCTAACAAAATTAAGTGAAGGTCCAAAATGGTAGCCATTTTATTTCTAACTTTCCACACATAATTGAAGAATAGAAAAAATTCTTCAAGGGTCTCAAGTTCGAGGAGTGGATGATAAATATTGTCAAAATCCAATACTTTGGACCATAGCCACTCTATATAAATATAAATTATTATTCGAGAGTTGAAACTAATTTATATATGGTTGAATGTATGAATGATTTTTTTTTTTAATAGCTTGAACACAAGTATTTTTCTATATCATTATTACTTAGATTAGTGACCTTATCTATTTAAATATATGATTCTTCATTTTAATTTTTGTTTGATGACGAAGTTTGACTTTATATATGTTCATTATAGAAAAACCTTAAGTGAAGTTGTAGTAAAAGTGAAAATTACTCTTTCTCATGTTGTTCTCAAGTTTTTTTTTTGAAAGACCTATGTGTTTGTAGCTTGTTTCGGATACAATGAAGCATAATTATTATGTTTGTAGATATTATATAGAAATATATACATTTAATACATACAAACATAATAATTATGCTTAGTTGTACTCGAAATAAACTATGAGTTTAGCTTAGTGGTAACAGACATAGACTCTTCATTTGAGGCCGAAAGTTTGATCTCCTATTCTTGTAAAATACCATAGAAAAAAAATACTATATATTATGCTTTTATAGGAAATACCAACTACTCAATAAACTTTGTTGTTTTCATTAATGTTTACTGATTTTTGTAGGGAATAACAAGGAGTTGGGTGGTTAA

mRNA sequence

ATGGCTTCTCCTTCTCGACTTTCCATTTACTTCTCTTTCCTCTTTCTCCTCCTTGTGGCTACCGCCATGGTAGCCTCTGCCACTCGCTATCCACCCGCAAATCCAATTGCAAGCAAAGAGAATAATGAAGGCATGATTGGCTTACAAGACTACGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAAGGGGAATAACAAGGAGTTGGGTGGTTAA

Coding sequence (CDS)

ATGGCTTCTCCTTCTCGACTTTCCATTTACTTCTCTTTCCTCTTTCTCCTCCTTGTGGCTACCGCCATGGTAGCCTCTGCCACTCGCTATCCACCCGCAAATCCAATTGCAAGCAAAGAGAATAATGAAGGCATGATTGGCTTACAAGACTACGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAAGGGGAATAACAAGGAGTTGGGTGGTTAA

Protein sequence

MASPSRLSIYFSFLFLLLVATAMVASATRYPPANPIASKENNEGMIGLQDYGDARANHRHDPHHPLTVKGNNKELGG
Homology
[Close]
BLAST of Cla97C03G051450 vs. NCBI nr
Match: XP_022998316.1 (uncharacterized protein LOC111492989 [Cucurbita maxima])

HSP 1 Score: 87.0 bits (214), Expect = 3.0e-14
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 0 

Query: 5  SRLSIYFSFLFLLLVATAMVAS-ATRYPPANPIASKENNEGMIGLQDYGDARANHRHDPH 64
          S+ S+YFS LF LL   A+VA+   R  PANPI+S E ++ MIGL+DYGDARANHRH+PH
Sbjct: 3  SQSSLYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHDEMIGLRDYGDARANHRHEPH 62

Query: 65 HPLTVKGNNKEL 76
          HPL V+G  KEL
Sbjct: 63 HPLGVEGYKKEL 74

[Close]
BLAST of Cla97C03G051450 vs. NCBI nr
Match: XP_022150920.1 (uncharacterized protein LOC111018956 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 3.6e-12
Identity = 46/101 (45.54%), Postives = 53/101 (52.48%), Query Frame = 0 

Query: 5   SRLSIYFSFLFLLLVATAMVASATRYPPANPIASKEN----------------------- 64
           SRLS+YFS L LLL   ++V+SA R+ PA       N                       
Sbjct: 3   SRLSLYFSLLILLLATASIVSSAARHAPATSSKLARNGGMVEIHERFAKSRVEDNSMVHH 62

Query: 65  -----NEGMIGLQDYGDARANHRHDPHHPLTVKGNNKELGG 78
                +E MIGL DYGD  ANH+HDPHHPL VKGNNKEL G
Sbjct: 63  RLLTGHEEMIGLHDYGDTHANHKHDPHHPLAVKGNNKELDG 103

[Close]
BLAST of Cla97C03G051450 vs. NCBI nr
Match: XP_008457363.1 (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-11
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 32 PANPIASKE-NNEGMIGLQDYGDARANHRHDPHHPLTV-KGNNKELGG 78
          P  PI+S E N+EGMIGLQDYGDARANHRHDPHHPLTV KGN KEL G
Sbjct: 35 PPIPISSNERNDEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG 82

[Close]
BLAST of Cla97C03G051450 vs. TrEMBL
Match: tr|A0A1S3C5B4|A0A1S3C5B4_CUCME (protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 32 PANPIASKE-NNEGMIGLQDYGDARANHRHDPHHPLTV-KGNNKELGG 78
          P  PI+S E N+EGMIGLQDYGDARANHRHDPHHPLTV KGN KEL G
Sbjct: 35 PPIPISSNERNDEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG 82

The following BLAST results are available for this feature:
BLAST of Cla97C03G051450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022998316.13.0e-1462.50uncharacterized protein LOC111492989 [Cucurbita maxima][more]
XP_022150920.13.6e-1245.54uncharacterized protein LOC111018956 [Momordica charantia][more]
XP_008457363.11.8e-1181.25PREDICTED: protein PSY1-like [Cucumis melo][more]
BLAST of Cla97C03G051450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C5B4|A0A1S3C5B4_CUCME1.2e-1181.25protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1[more]
BLAST of Cla97C03G051450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C03G051450 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G051450.1Cla97C03G051450.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..68

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C03G051450Csa1G532270Cucumber (Chinese Long) v2cuwmbB043
Cla97C03G051450MELO3C020539Melon (DHL92) v3.5.1mewmbB153
Cla97C03G051450ClCG03G000650Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G051450CSPI01G23990Wild cucumber (PI 183967)cpiwmbB044
Cla97C03G051450CmoCh01G007030Cucurbita moschata (Rifu)cmowmbB448
Cla97C03G051450Lsi02G012730Bottle gourd (USVL1VR-Ls)lsiwmbB177
Cla97C03G051450CsGy1G023480Cucumber (Gy14) v2cgybwmbB042
Cla97C03G051450MELO3C020539.2Melon (DHL92) v3.6.1medwmbB142
Cla97C03G051450CsaV3_1G036300Cucumber (Chinese Long) v3cucwmbB042
Cla97C03G051450Bhi08G000410Wax gourdwgowmbB470
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G051450Watermelon (97103) v2wmbwmbB051
Cla97C03G051450Silver-seed gourdcarwmbB0404
Cla97C03G051450Silver-seed gourdcarwmbB0545
Cla97C03G051450Silver-seed gourdcarwmbB0694
Cla97C03G051450Silver-seed gourdcarwmbB1053
Cla97C03G051450Cucumber (Gy14) v1cgywmbB320
Cla97C03G051450Cucurbita maxima (Rimu)cmawmbB225
Cla97C03G051450Cucurbita maxima (Rimu)cmawmbB257
Cla97C03G051450Cucurbita maxima (Rimu)cmawmbB467
Cla97C03G051450Cucurbita maxima (Rimu)cmawmbB748
Cla97C03G051450Cucurbita maxima (Rimu)cmawmbB749
Cla97C03G051450Cucurbita maxima (Rimu)cmawmbB854
Cla97C03G051450Cucurbita moschata (Rifu)cmowmbB209
Cla97C03G051450Cucurbita moschata (Rifu)cmowmbB237
Cla97C03G051450Cucurbita moschata (Rifu)cmowmbB720
Cla97C03G051450Cucurbita moschata (Rifu)cmowmbB721
Cla97C03G051450Cucurbita moschata (Rifu)cmowmbB830
Cla97C03G051450Wild cucumber (PI 183967)cpiwmbB204
Cla97C03G051450Cucumber (Chinese Long) v2cuwmbB199
Cla97C03G051450Melon (DHL92) v3.6.1medwmbB316
Cla97C03G051450Melon (DHL92) v3.5.1mewmbB328
Cla97C03G051450Watermelon (Charleston Gray)wcgwmbB046
Cla97C03G051450Watermelon (97103) v1wmwmbB065
Cla97C03G051450Watermelon (97103) v1wmwmbB124