ClCG03G000650 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G000650
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 652048 .. 654221 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCATTACTTTTCACTTTTGTGTTGAAATCAGAAGGTGAAGAGAGGTAGAGACATATATATATATATATATATTAATGGCTTCTCCTTCTCGACTTTCCATTTACTTCTCTTTCCTCTTTCTCCTCCTTGTGGCTACCGCCATGGTAGCCTCTGCCACTCGCTATCCACCCGCAAATCCAATTGCAAGCAAAGAGAGTAAGAACGAAACTCTTTCTTCTTCTTCACCTTATTCATTTCTTTTCGTCAAATATGTCGTAACTGCTCTACTTAAATTTGTACGTTTTAACAGTTTAGCATTGTATAAGGGAGATCGATATCGGTCTCTTGAAGTCATATTTTTCTTATTTTATATAAAAATAGTCTAATTTGTCAAAATTTTGTAGCTGATCGAAGGAGAGAATGCTGATATAATATGCATACAAATGATCAAATATGCCTAACCTCTCAAGTCTCAACTTAAGTTTTCGTAGTTTTATCAATACTTTTAGGGTAAATTTTGGTCCTTGGACGTCTTTGGGTTTCATTTCATCTTCCTCCATTTATTTTCAAATGTCTAATACTACTCTTTATAATACTTTCGACAAATTTTAAATTTAATCCTTCAAAAATTATATTTATCGAAATTGTTACCTATTGATAATAATTTTCATACAATAAATAACTCTATACGTTCATGTGCTTACAAAATTTATAAAAGAAATTTTACTAAGACTAAATTTTTGTTTGAAAAAATCAACAATATAACTAATAGCAAGGACTATTCCTGAGAGCATAAAGACAACAATTTAAAAATTTACAGACTAAAATAAAATGAAATTTTTGAGTTTCAAACTCTAAAAGTGTCATTTTTCCTTTCATTCCTTTTCTATGATAATCAAGTCTTAGGCCTTATGTTTAATTTTCAAGCTTTGTAAATGATTAAATTTATTTGGTGGGTTTATTGGTAGTTTAATAGCTAATTAGTTTTGTGATTACAAATGTTTGTAGATAATGAAGGCATGATTGGCTTACAAGACTACGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAAGGGTAAGCCTAACCATACATTAATAATCCATACTAACATTCCTAATTAACAAATTTAAATTCTAACACCTTGGCTAATTAAGGGCCAAATTAGTAATTTTTCTTACATCTCCTAGATAAAGAGATTTCAATACTAGAAGAAAAACATCTCTACCTAACAAAATTAAGTGAAGGTCCAAAATGGTAGCCATTTTATTTCTAACTTTCCACACATAATTGAAGAATAGAAAAAATTCTTCAAGGGTCTCAAGTTCGAGGAGTGGATGATAAATATTGTCAAAATCCAATACTTTGGACCATAGCCACTCTATATAAATATAAATTATTATTCGAGAGTTGAAACTAATTTATATATGGTTGAATGTATGAATGATTTTTTTTTTTAATAGCTTGAACACAAGTATTTTTCTATATCATTATTACTTAGATTAGTGACCTTATCTATTTAAATATATGATTCTTCATTTTAATTTTTGTTTGATGACGAAGTTTGACTTTATATATGTTCATTATAGAAAAACCTTAAGTGAAGTTGTAGTAAAAGTGAAAATTACTCTTTCTCATGTTGTTCTCAAGTTTTTTTTTTGAAAGACCTATGTGTTTGTAGCTTGTTTCGGATACAATGAAGCATAATTATTATGTTTGTAGATATTATATAGAAATATATACATTTAATACATACAAACATAATAATTATGCTTAGTTGTACTCGAAATAAACTATGAGTTTAGCTTAGTGGTAACAGACATAGACTCTTCATTTGAGGCCGAAAGTTTGATCTCCTATTCTTGTAAAATACCATAGAAAAAAAATACTATATATTATGCTTTTATAGGAAATACCAACTACTCAATAAACTTTGTTGTTTTCATTAATGTTTACTGATTTTTGTAGGGAATAACAAGGAGTTGGGTGGTTAATGGGAAGAGAATGGCAAGGAATTAAGGGCATTATGGTCAAGTGGTGGAAGCAACTATTTGTGTGTTGAGATAATTAGTACAAGAATAAAAATTTTCACACACTATGATATTTTTGCATCCCTTTGTTTTGAGTATCAACTTAAAATGGTATTGTTACTATTATTATTAAGCTAATTTTCTA

mRNA sequence

ATTCATTACTTTTCACTTTTGTGTTGAAATCAGAAGGTGAAGAGAGGTAGAGACATATATATATATATATATATTAATGGCTTCTCCTTCTCGACTTTCCATTTACTTCTCTTTCCTCTTTCTCCTCCTTGTGGCTACCGCCATGGTAGCCTCTGCCACTCGCTATCCACCCGCAAATCCAATTGCAAGCAAAGAGAATAATGAAGGCATGATTGGCTTACAAGACTACGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAAGGGGAATAACAAGGAGTTGGGTGGTTAATGGGAAGAGAATGGCAAGGAATTAAGGGCATTATGGTCAAGTGGTGGAAGCAACTATTTGTGTGTTGAGATAATTAGTACAAGAATAAAAATTTTCACACACTATGATATTTTTGCATCCCTTTGTTTTGAGTATCAACTTAAAATGGTATTGTTACTATTATTATTAAGCTAATTTTCTA

Coding sequence (CDS)

ATGGCTTCTCCTTCTCGACTTTCCATTTACTTCTCTTTCCTCTTTCTCCTCCTTGTGGCTACCGCCATGGTAGCCTCTGCCACTCGCTATCCACCCGCAAATCCAATTGCAAGCAAAGAGAATAATGAAGGCATGATTGGCTTACAAGACTACGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAAGGGGAATAACAAGGAGTTGGGTGGTTAA

Protein sequence

MASPSRLSIYFSFLFLLLVATAMVASATRYPPANPIASKENNEGMIGLQDYGDARANHRHDPHHPLTVKGNNKELGG
Homology
[Close]
BLAST of ClCG03G000650 vs. TrEMBL
Match: A0A0A0LXN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.2e-23
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1 

Query: 4  PSRLSIYFSFLFLLLVATAMVASATRYPPANPIAS-KENNEGMIGLQDYGDARANHRHDP 63
          P RLS YFSFL LLL+ATAMVASA R+ PA P++S K N++ MIGLQDYGDARANHRHDP
Sbjct: 8  PPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDP 67

Query: 64 HHPLTV-KGNNKELGG 78
          HHPL+V KGNNKEL G
Sbjct: 68 HHPLSVNKGNNKELDG 83

[Close]
BLAST of ClCG03G000650 vs. NCBI nr
Match: gi|700210723|gb|KGN65819.1| (hypothetical protein Csa_1G532270 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 8.9e-23
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1 

Query: 4  PSRLSIYFSFLFLLLVATAMVASATRYPPANPIAS-KENNEGMIGLQDYGDARANHRHDP 63
          P RLS YFSFL LLL+ATAMVASA R+ PA P++S K N++ MIGLQDYGDARANHRHDP
Sbjct: 8  PPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDP 67

Query: 64 HHPLTV-KGNNKELGG 78
          HHPL+V KGNNKEL G
Sbjct: 68 HHPLSVNKGNNKELDG 83

[Close]
BLAST of ClCG03G000650 vs. NCBI nr
Match: gi|659115050|ref|XP_008457363.1| (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 1 

Query: 2  ASPSRLSIYFSFLFLLLVATAMVASATRYPPANPIASKE-NNEGMIGLQDYGDARANHRH 61
          +S  RLS YFSFL LLL+ TAMVASA R+ P  PI+S E N+EGMIGLQDYGDARANHRH
Sbjct: 5  SSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANHRH 64

Query: 62 DPHHPLTV-KGNNKELGG 78
          DPHHPLTV KGN KEL G
Sbjct: 65 DPHHPLTVNKGNKKELDG 82

The following BLAST results are available for this feature:
BLAST of ClCG03G000650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXN0_CUCSA6.2e-2376.32Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532270 PE=4 SV=1[more]
BLAST of ClCG03G000650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210723|gb|KGN65819.1|8.9e-2376.32hypothetical protein Csa_1G532270 [Cucumis sativus][more]
gi|659115050|ref|XP_008457363.1|1.2e-2275.64PREDICTED: protein PSY1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G000650.1ClCG03G000650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G000650Csa1G532270Cucumber (Chinese Long) v2cuwcgB047
ClCG03G000650MELO3C020539Melon (DHL92) v3.5.1mewcgB149
ClCG03G000650Cla97C03G051450Watermelon (97103) v2wcgwmbB186
ClCG03G000650Bhi08G000410Wax gourdwcgwgoB340
ClCG03G000650CSPI01G23990Wild cucumber (PI 183967)cpiwcgB050
ClCG03G000650CmoCh01G007030Cucurbita moschata (Rifu)cmowcgB403
ClCG03G000650Lsi02G012730Bottle gourd (USVL1VR-Ls)lsiwcgB185
ClCG03G000650Cp4.1LG02g11870Cucurbita pepo (Zucchini)cpewcgB503
ClCG03G000650CsGy1G023480Cucumber (Gy14) v2cgybwcgB044
ClCG03G000650MELO3C020539.2Melon (DHL92) v3.6.1medwcgB141
ClCG03G000650CsaV3_1G036300Cucumber (Chinese Long) v3cucwcgB051
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G000650Cucurbita pepo (Zucchini)cpewcgB380
ClCG03G000650Cucurbita pepo (Zucchini)cpewcgB467
ClCG03G000650Melon (DHL92) v3.6.1medwcgB322
ClCG03G000650Silver-seed gourdcarwcgB0154
ClCG03G000650Silver-seed gourdcarwcgB0504
ClCG03G000650Silver-seed gourdcarwcgB0648
ClCG03G000650Silver-seed gourdcarwcgB0974
ClCG03G000650Watermelon (97103) v2wcgwmbB176
ClCG03G000650Watermelon (97103) v2wcgwmbB187
ClCG03G000650Wax gourdwcgwgoB337
ClCG03G000650Watermelon (Charleston Gray)wcgwcgB049
ClCG03G000650Watermelon (Charleston Gray)wcgwcgB140
ClCG03G000650Cucumber (Gy14) v1cgywcgB315
ClCG03G000650Cucurbita maxima (Rimu)cmawcgB194
ClCG03G000650Cucurbita maxima (Rimu)cmawcgB229
ClCG03G000650Cucurbita maxima (Rimu)cmawcgB404
ClCG03G000650Cucurbita maxima (Rimu)cmawcgB646
ClCG03G000650Cucurbita maxima (Rimu)cmawcgB735
ClCG03G000650Cucurbita moschata (Rifu)cmowcgB184
ClCG03G000650Cucurbita moschata (Rifu)cmowcgB212
ClCG03G000650Cucurbita moschata (Rifu)cmowcgB648
ClCG03G000650Cucurbita moschata (Rifu)cmowcgB649
ClCG03G000650Cucurbita moschata (Rifu)cmowcgB741
ClCG03G000650Wild cucumber (PI 183967)cpiwcgB220
ClCG03G000650Cucumber (Chinese Long) v2cuwcgB216
ClCG03G000650Melon (DHL92) v3.5.1mewcgB328
ClCG03G000650Watermelon (97103) v1wcgwmB221
ClCG03G000650Watermelon (97103) v1wcgwmB223