MELO3C020539 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020539
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionZinc-activated ligand-gated ion channel
Locationchr12 : 664409 .. 667023 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATTCATTACTTTTCTCTTTTGTATTGAAAATAGAAGGTGAGGAGAGGTAGAGATATATATTAATGGCTTCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTACTTCTCCTCCTCCTCACTACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTCCAATTCCAATTTCGAGCAATGAGAGTAAGAACGGAACCCTTTCCTAGTTCTTCTCTTCTTCACCTTTGTTCATTTTTCTTTCCTTTAATCTAAATTTGTCGTTTAACATAGGGGTATAAATGAGTAATTGGGTTGAGGGACATTTTTAATCCAACCTATATTTTCAACTTAGTTGGTTGACAACCCAAATAATCCGAATTATATTTCCAATCCAACCCAACTCAACCCTTAGGGGCCGTTTGGGGGAAGGGCTTGAGTTATGGGAGGTTAGGATTATGATAAACCTAGTGTTAAGATAAACCTAGGATTATAATAAAATGTGTTTGGGGGATGGGTTATGGAGGAAGTGTTATGATAAGATGTGTTTGGGGGAAGGGTTATGAAGGAGGTGTTATGATAATGTTGTGATAAGATGTGTTTGGGAGAATGGTTATGTGGGTAGTATTAAGGAAGAGTTGAAGAAGAGTTAAGGAAAAGTTGAAGAAGGGTTAAGAAGTGTTGAAGAAGGATTGGGGAAAAGTTGAAGAAGGGTTAAGAAGTGTTGAAGAAGAGTTAAGGAGTTAAAACTAGGGTTACATGACCCTTCCCCCAAACGGGGGTTGGATTACATAACCCTAATCTCCATAATCCAACCCTTAATGGTTGGGTTGAGTTAGTATTTTTTTTTTTTTCATTCCTAATTTTTACGATTTAAAATTGTTGTACGACAACGATAAATACTCACATCCAAAGATTCAAACATCCATGAATTCAAAGTTTCAAATATTTACAAAAGTTTAACATTCCAAACATTATTGTAATATTAAATAAACAATAAAATATCTATAATATAAATATAAATAAATATAGATATATTTTTAATTCAGGTTGGGTTGACACAAATTTTCCAACACCTAACCGAAGACCTAATTCGACAAAAATCAAAATTTTCAATCTAACTCATATAATATGGGTTGGATAGTATTGATTGTCAGATTATTTGGGTTATTCTTACACACTTAATATAACTTTTTTTTTTTTTAATTTGATAGTTTAACGTAGTATACGAGACATGATATCTATTCCGATTTTTTGAAGATAGAACTTTTGCATTCTTGGTTTATAAAATAATGGTTGAACTTGTCGGATTTTTTTTGTTCCAATGCATACAACTGATTAAAGATGTTTGGCCTCTCAATTTAATTTTTACGTAGAATCAGGGAAAATAAAATTCTGGTTATTTTGCATTTCGAATTTCAGAGTTTCATTAAGTCAAAATTTATTCTTTTTACTTTAAATTGATTTTATATTTAATCATTCAAAGTTAATAATTTTCTAGATGGTCATCAAATAATAATAAATTTTGTAAAAACATAAAATAATATTATACGTGTTTGAATTCTAAAGATTTATAAAAAACCTAAGTAGCAAACAATATTTTTATATTTGGAAAAAGCAACATCGTGATTAAAATCAACAAAAAGTACTATTATTCTTAAGATTTACCGATAGTATTTAAAAAAAAAAAAATATTCGAAAGTACATGAAATAAAACTCGAAATTAAATTAAAATAGTATGTATTTTAGGTATTATATTAAAAATTTAACATGGTGTCAAAATAGAAGGTTTTGAGTAATTTGTCATGTCATATACTTTCATATGTACATATATGATAATTAACCTAAGGTCTTAATGTTTAATTTTCAAGCTTTATAAACTATTGAACTTGTTTTATGGATTTATAGGTAATTTAATATGATTAATTATAAAGTTTTATGGTTAATTAAAAATGTATATATGTAGGAAATGATGAAGGGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAAGGTAAGTTTCACCGTAGACATACCTATAATTGATGAATGGAAAATATACTCTTCAACTGTTTCGAGTCTCGTCACTTATTCTATATAAATATAGATTATTACTCGAGTGATGAAACTAATTGGTATATCATTGAATGCATGAGATGAGATTTTTTATTTATTTGGTTTCTTAATGGCTTAGAGTACAAGTCTCTAACTAAATTATTATTATTTAGATTATTAGTGACTTTATCTATTTAAATAAATGTATAAAAACTATGTGGTGAAGTTCTTTCGTACAAAAGAAAACCATACATTCTTGTAAATATAATATTTTTATACTTAATTGTACTCGAAATAAAACTATGAAAGTTTTTAATACATTCAAAGAGGTTGAAGTTGTTGATATTTCATATATATACTTACGATTATAGCAAATCACCTAATAAAATTTGTTGTTATAATTATTATTTATTGATTTTTTTTTGTAGGGAACAAGAAGGAATTGGATGGTTAATGAGAATTAGAGGATATTATAATGGCATTATGATCAAGTGGTGGAAGCAACTATTTGGTGTGTGTTGAGATAA

mRNA sequence

TCCATTCATTACTTTTCTCTTTTGTATTGAAAATAGAAGGTGAGGAGAGGTAGAGATATATATTAATGGCTTCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTACTTCTCCTCCTCCTCACTACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTCCAATTCCAATTTCGAGCAATGAGAGAAATGATGAAGGGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAAGGGAACAAGAAGGAATTGGATGGTTAATGAGAATTAGAGGATATTATAATGGCATTATGATCAAGTGGTGGAAGCAACTATTTGGTGTGTGTTGAGATAA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTACTTCTCCTCCTCCTCACTACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTCCAATTCCAATTTCGAGCAATGAGAGAAATGATGAAGGGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAAGGGAACAAGAAGGAATTGGATGGTTAA

Protein sequence

MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG*
Homology
[Close]
BLAST of MELO3C020539 vs. TrEMBL
Match: A0A0A0LXN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.6e-32
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 1 

Query: 1  MASSSSS-PRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDAR 60
          MASSSS  PRLSFYFSFL+LLLL TAMVASAARHAP IP+SSN+RND+ MIGLQDYGDAR
Sbjct: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLTVNKGNKKELDG 83
          ANHRHDPHHPL+VNKGN KELDG
Sbjct: 61 ANHRHDPHHPLSVNKGNNKELDG 83

[Close]
BLAST of MELO3C020539 vs. NCBI nr
Match: gi|659115050|ref|XP_008457363.1| (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 4.3e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA 60
          MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA
Sbjct: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA 60

Query: 61 NHRHDPHHPLTVNKGNKKELDG 83
          NHRHDPHHPLTVNKGNKKELDG
Sbjct: 61 NHRHDPHHPLTVNKGNKKELDG 82

[Close]
BLAST of MELO3C020539 vs. NCBI nr
Match: gi|700210723|gb|KGN65819.1| (hypothetical protein Csa_1G532270 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-32
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 1 

Query: 1  MASSSSS-PRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDAR 60
          MASSSS  PRLSFYFSFL+LLLL TAMVASAARHAP IP+SSN+RND+ MIGLQDYGDAR
Sbjct: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLTVNKGNKKELDG 83
          ANHRHDPHHPL+VNKGN KELDG
Sbjct: 61 ANHRHDPHHPLSVNKGNNKELDG 83

The following BLAST results are available for this feature:
BLAST of MELO3C020539 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXN0_CUCSA1.6e-3286.75Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532270 PE=4 SV=1[more]
BLAST of MELO3C020539 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115050|ref|XP_008457363.1|4.3e-39100.00PREDICTED: protein PSY1-like [Cucumis melo][more]
gi|700210723|gb|KGN65819.1|2.3e-3286.75hypothetical protein Csa_1G532270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020539T1MELO3C020539T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C020539Csa1G532270Cucumber (Chinese Long) v2cumeB028
MELO3C020539ClCG03G000650Watermelon (Charleston Gray)mewcgB149
MELO3C020539Cla97C03G051450Watermelon (97103) v2mewmbB153
MELO3C020539Bhi08G000410Wax gourdmewgoB161
MELO3C020539CSPI01G23990Wild cucumber (PI 183967)cpimeB025
MELO3C020539CmoCh01G007030Cucurbita moschata (Rifu)cmomeB382
MELO3C020539Lsi02G012730Bottle gourd (USVL1VR-Ls)lsimeB174
MELO3C020539CsGy1G023480Cucumber (Gy14) v2cgybmeB023
MELO3C020539CsaV3_1G036300Cucumber (Chinese Long) v3cucmeB025
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020539Watermelon (97103) v1mewmB145
MELO3C020539Watermelon (97103) v1mewmB146
MELO3C020539Watermelon (97103) v1mewmB175
MELO3C020539Cucurbita pepo (Zucchini)cpemeB390
MELO3C020539Cucurbita pepo (Zucchini)cpemeB479
MELO3C020539Cucurbita pepo (Zucchini)cpemeB496
MELO3C020539Bottle gourd (USVL1VR-Ls)lsimeB245
MELO3C020539Cucumber (Gy14) v2cgybmeB398
MELO3C020539Silver-seed gourdcarmeB0159
MELO3C020539Silver-seed gourdcarmeB0388
MELO3C020539Silver-seed gourdcarmeB0522
MELO3C020539Silver-seed gourdcarmeB0663
MELO3C020539Silver-seed gourdcarmeB0971
MELO3C020539Cucumber (Chinese Long) v3cucmeB465
MELO3C020539Watermelon (97103) v2mewmbB148
MELO3C020539Watermelon (97103) v2mewmbB160
MELO3C020539Wax gourdmewgoB152
MELO3C020539Melon (DHL92) v3.5.1memeB069
MELO3C020539Melon (DHL92) v3.5.1memeB072
MELO3C020539Cucumber (Gy14) v1cgymeB220
MELO3C020539Cucumber (Gy14) v1cgymeB313
MELO3C020539Cucurbita maxima (Rimu)cmameB194
MELO3C020539Cucurbita maxima (Rimu)cmameB216
MELO3C020539Cucurbita maxima (Rimu)cmameB391
MELO3C020539Cucurbita maxima (Rimu)cmameB666
MELO3C020539Cucurbita maxima (Rimu)cmameB667
MELO3C020539Cucurbita maxima (Rimu)cmameB669
MELO3C020539Cucurbita maxima (Rimu)cmameB750
MELO3C020539Cucurbita moschata (Rifu)cmomeB181
MELO3C020539Cucurbita moschata (Rifu)cmomeB201
MELO3C020539Cucurbita moschata (Rifu)cmomeB658
MELO3C020539Cucurbita moschata (Rifu)cmomeB661
MELO3C020539Cucurbita moschata (Rifu)cmomeB662
MELO3C020539Cucurbita moschata (Rifu)cmomeB742
MELO3C020539Wild cucumber (PI 183967)cpimeB180
MELO3C020539Wild cucumber (PI 183967)cpimeB454
MELO3C020539Cucumber (Chinese Long) v2cumeB185
MELO3C020539Cucumber (Chinese Long) v2cumeB459
MELO3C020539Watermelon (Charleston Gray)mewcgB128
MELO3C020539Watermelon (Charleston Gray)mewcgB155