CSPI01G23990 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G23990
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 19425835 .. 19427587 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAATAAGGATGCTTTTGCTTTGGCTTCTCCATTCAATACTTTTCACTTTTGTATTGAAAATAGAAGGTGAGGAGAGGTAGAGATATATATTAATGGCTTCTTCTTCTCCTCCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATTTTCCTCCTCCTCGCAACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAGTTTCGAGCAACAAGAGTAAGAACGAAACCCTTTCTAGTTCTTCCTTCTTCACCTTTATTCATTTCTGATCGTTTAATTTAAATTTGTCATAACCTTTTTATTTAATGTTTTACGATTTGATAGTTTAACACAATAGTATTAAAGAACTCGATATCTATATCAATTTTCACGAAGATAAAACTTTTGCAATGTCGTTCTTGGTTTATATAATAATGGTCGAAGTTGTCAAATTTTTTGTGCCAATCCGTACAAATGATAAAAAATGTCTTACCTCTCAATTTAATCTTTACAGGGAAAATAATATTTTGGCTCTTTTGTATTCCAAGTTTCCTGAAGTGTTTTCAATCGTCTAAATTTACTCTTTTTATATTACTTTCAATATATTTTAAATTTAATCATTCAAAAATTAATAATTTTGTAGAGTGTTATCAAATAATAATAAATTTTGTAAATAAATTATCATATATACGTGAGTTCAAAAAATTTATAAAAGAAATCTAAATAGAGATAATATTTTTATATTTGGAAAAATGTGGTTATAATCAACAAAAGATACTATTATTTTAAAGATTTACAGATGGTATTAATAAAAAATATTCCGAAGTACATAAAATAAAATTCGAAATTAAATTAAAGTAATAGGTATTTTAGACTATTATATTAATTTTAACATGGTGTCAAAATAGAAGGTTTTGAGTAAGTGTCATGTATCCTCTTTATATATATATATATGATTTAACCCTAAGGCCTTATGTTTAATTTTTCAAGCTTTACAAATGATCAAACTTATTTGACAAGGTGTAGTTTAGTACATAGTTAACTATATAGTTTTATGGTTAATTAAAAAATTTTATATACGTAGGAAATGACAAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTATCTGTAAACAAGGGTATGTTTAACCAAAGGTTCTTCAACGGTTTCGAATCTCTCACTCACTCCATACAAATATAGATTATTACTCAATGGATAAAACTAATTGGTATATCATTGAATGCGTGAGATATAAATTATTATTTATTTGTTTTTTTAATGACTTAGATCCCGAGTCTCTAACTAAATTATTATTATTTAGGTTATTAGTGTTTTTATCTATTCAAATAACATAACAAGTACGAGAATGGTGAAGTTTCATCCATTCTCATAAACATATTTAAGTATGAGAGTTTAGCTCAACATTGAGGGTTATATATCATATATACTTACCATTATAGCAAACCCACCTAATAAAAATTTGTTGTTATAATTAATCATGATTTGTTGATTTTTGCAGGGAACAACAAGGAATTGGATGGTTAATGAGAATTAGAGAAGATAATGGCATTATGGTCAAGTGGTGGAAGCAACTATTTGATGTGTGTTGAGATAGTTAATACAAGAAATAAAATTTTTCACACACTATATGATATTTTTGCATATCCCTTAGTTTTATGTATCAAATTTAAAAGGATATATATTGTAACTATTTACTAATGTTGAGG

mRNA sequence

ATGGCTTCTTCTTCTCCTCCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATTTTCCTCCTCCTCGCAACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAGTTTCGAGCAACAAGAGAAATGACAAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTATCTGTAAACAAGGGGAACAACAAGGAATTGGATGGTTAA

Coding sequence (CDS)

ATGGCTTCTTCTTCTCCTCCTCCTCGACTTTCCTTTTACTTCTCTTTCTTAATTTTCCTCCTCCTCGCAACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTGCAATTCCAGTTTCGAGCAACAAGAGAAATGACAAAGAGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTATCTGTAAACAAGGGGAACAACAAGGAATTGGATGGTTAA
Homology
[Close]
BLAST of CSPI01G23990 vs. TrEMBL
Match: A0A0A0LXN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-36
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 2  ASSSPPPRLSFYFSFLIFLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN 61
          +SSSPPPRLSFYFSFLI LLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN
Sbjct: 3  SSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN 62

Query: 62 HRHDPHHPLSVNKGNNKELDG 83
          HRHDPHHPLSVNKGNNKELDG
Sbjct: 63 HRHDPHHPLSVNKGNNKELDG 83

[Close]
BLAST of CSPI01G23990 vs. NCBI nr
Match: gi|700210723|gb|KGN65819.1| (hypothetical protein Csa_1G532270 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-36
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 2  ASSSPPPRLSFYFSFLIFLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN 61
          +SSSPPPRLSFYFSFLI LLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN
Sbjct: 3  SSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARAN 62

Query: 62 HRHDPHHPLSVNKGNNKELDG 83
          HRHDPHHPLSVNKGNNKELDG
Sbjct: 63 HRHDPHHPLSVNKGNNKELDG 83

[Close]
BLAST of CSPI01G23990 vs. NCBI nr
Match: gi|659115050|ref|XP_008457363.1| (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-31
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1 

Query: 1  MASSSPPPRLSFYFSFLIFLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARA 60
          MASSS  PRLSFYFSFL+ LLL TAMVASAARHAP IP+SSN+RND+ MIGLQDYGDARA
Sbjct: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA 60

Query: 61 NHRHDPHHPLSVNKGNNKELDG 83
          NHRHDPHHPL+VNKGN KELDG
Sbjct: 61 NHRHDPHHPLTVNKGNKKELDG 82

The following BLAST results are available for this feature:
BLAST of CSPI01G23990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G23990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXN0_CUCSA1.1e-3697.53Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532270 PE=4 SV=1[more]
BLAST of CSPI01G23990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G23990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210723|gb|KGN65819.1|1.5e-3697.53hypothetical protein Csa_1G532270 [Cucumis sativus][more]
gi|659115050|ref|XP_008457363.1|2.5e-3185.37PREDICTED: protein PSY1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G23990.1CSPI01G23990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G23990Csa1G532270Cucumber (Chinese Long) v2cpicuB001
CSPI01G23990MELO3C020539Melon (DHL92) v3.5.1cpimeB025
CSPI01G23990ClCG03G000650Watermelon (Charleston Gray)cpiwcgB050
CSPI01G23990Lsi02G012730Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G23990MELO3C020539.2Melon (DHL92) v3.6.1cpimedB024
CSPI01G23990CsaV3_1G036300Cucumber (Chinese Long) v3cpicucB000
CSPI01G23990Cla97C03G051450Watermelon (97103) v2cpiwmbB044
CSPI01G23990Bhi08G000410Wax gourdcpiwgoB048
CSPI01G23990CmoCh01G007030Cucurbita moschata (Rifu)cmocpiB420
CSPI01G23990Cp4.1LG02g11870Cucurbita pepo (Zucchini)cpecpiB531
CSPI01G23990CsGy1G023480Cucumber (Gy14) v2cgybcpiB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G23990Cucumber (Chinese Long) v2cpicuB028
CSPI01G23990Melon (DHL92) v3.5.1cpimeB065
CSPI01G23990Watermelon (Charleston Gray)cpiwcgB004
CSPI01G23990Watermelon (97103) v1cpiwmB004
CSPI01G23990Watermelon (97103) v1cpiwmB023
CSPI01G23990Cucurbita pepo (Zucchini)cpecpiB382
CSPI01G23990Cucurbita pepo (Zucchini)cpecpiB507
CSPI01G23990Melon (DHL92) v3.6.1cpimedB057
CSPI01G23990Silver-seed gourdcarcpiB0177
CSPI01G23990Silver-seed gourdcarcpiB0415
CSPI01G23990Silver-seed gourdcarcpiB0557
CSPI01G23990Silver-seed gourdcarcpiB0691
CSPI01G23990Silver-seed gourdcarcpiB1034
CSPI01G23990Watermelon (97103) v2cpiwmbB015
CSPI01G23990Wild cucumber (PI 183967)cpicpiB019
CSPI01G23990Cucumber (Gy14) v1cgycpiB277
CSPI01G23990Cucurbita maxima (Rimu)cmacpiB220
CSPI01G23990Cucurbita maxima (Rimu)cmacpiB236
CSPI01G23990Cucurbita maxima (Rimu)cmacpiB430
CSPI01G23990Cucurbita maxima (Rimu)cmacpiB697
CSPI01G23990Cucurbita maxima (Rimu)cmacpiB699
CSPI01G23990Cucurbita moschata (Rifu)cmocpiB206
CSPI01G23990Cucurbita moschata (Rifu)cmocpiB223
CSPI01G23990Cucurbita moschata (Rifu)cmocpiB691
CSPI01G23990Cucurbita moschata (Rifu)cmocpiB692