Cp4.1LG02g11870 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g11870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	PHD finger-like domain-containing protein 5A
Location	Cp4.1LG02 : 10781182 .. 10785089 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATTGCCATTGGCCGACTCTGTGAGAAGTGTGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGTCCCTGTACGCTTGTTCGTGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTTATCTGTGGAGGAGTAGGAATCTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATCGTTAACTTAGGGAGTGCAAAAACAGACTTATTCTATGAACGTAAGAAATACGGGTTCAAGAAACGTTAAAGTTAAAAAAAAAAGGATGGATCTTACTGTAATCTGACCGATTTCGGATTTCTAATCACAAACTCTCTTAGACATGTATGTATATGCTGATGAGAACAGTCGTTTGATCAAGGCCAGGGCCGGTGCCATTCACTAGCATCAAAAACTATATTGATTGTACTGCTTGTATTGTTGTGTTTATATTGATGGATAGGAACTTTGCTCAACCAAATTAATGGAGAAGAAATTGTTGAAGAGGCTGTTGCAAACAGAAAAAAAGGTATGAATATTCCTTCCATCGTGATATATTGAAACTTCATGTGCATTTTTCTTAGTTTGTGCCTTGGTTGGTCTAGAAGGAAATGCGATTGAGATTTGAATGTCAATCTTCTGTTTTACTAGAGTAATGATGCAAGGGAGGAGGTCCCTCCACCCTTCAAATAAGGGAAGAGAAGTTAAATGCTCAAAGTCAACCAAAATACAGTGAATTTTGGGATCCATAGTTGATGGGATGGACAGGTTTGGTTTGAGATTTGTAGGTGCTCATATGCCTGTTGGTAGTGGAATTTCTTTGAATGTTTTCATGCTCCATGTTCGTTTCCTTTTCATCACTTCACTTCTCTTTTGACTGAAAGAGAGGGCATTTGTTCTTTCCATTAATGGCCATCGAATGTTTTCACAATTCATAAGAGATTGTGACATCAGTATCAAATATTGTGTTACAATCGCACTTTTTTTGGCAGCGGATTTGGCGATTGTTCGGCACTCACTCTCTGCATTGAGAGTGAGCCAAGCCAACTTAGGATCGCGTTGCCTACGGTCGAGCAACGTATGTTCAAGCCTTTGGTCTCGTTTTGAGAAGAAGGTTTTAGAAAATAGGGAAGATATTTTGAAAGGGTGTTTGAAAGCAAGATTGAGAGAGAGATTAAAAACAATGTTATAGGACTGTAAGTTAACATATAAGTTAGGTATTATATAAAATAAATGTTGATCGAGAAAAGGTTTTGGAATATCTTAAAGATATTCGTTTGATGCCTACAAAGAGTTGAACAAGAGAAGTTCAAATTGTATTCATTTCATTATTTGATTGAAGTGCCATTAGTGCAAGTCAACTGAAGAGAAGGTAGCAAATTAGAGAGCTAAATCATGGCATGGCTTGAAAGTTGAAACCTGGTTTTTGTGTAAGCATATTGGTTGCACTATTTGGAACCTCTTCTATAGCTATCATCTTTCTTTTGACTTTGGAACAGAAATACCCTCTTTCATTCAATTGCTTGAACCCATAACTCATCTATGCTTTGGAAGTGTTAGAAGGCTCATAGAAAGCAGGGTTCTTTAATGTAATTTATGAGCTTCTTTAGTAATTTAATGTTTAATTTACTTGAACTTTTGAGGTTCGTGATAGTTTGATTATATCTACTTCAAGAATTACAGAAGTGAAGAATGGAACCATCGACTTTTAAGATGTTAAATTGTCTTATTCATTTAACTATATCTGGATCGACTTATTCTCGACCAAACCATTTTAGGTAGATAATTTCTAGGGTTTCTTTGCGCCAAAATTCTTGTATGGTTCATTGAAAGAGGTGAATTTAACCTGAGCTACTAACTTAGTCTTATAGAACTCATATAATACGATAATTTTCTTTTTTAGTTCAAACGATGATGAAATNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTATATTTTTAATGTTTTCATCGATACACATTCTTAGTATTTTTAGTTAAAAGTACCATTGTGATTACAACATGAGTGTATGATTAGGTTTAAGCATTATCTTTATCCCACATGATTCTAATAAATTTCTTAAATCAAAGCCATTAAACAAGGCTTTCTATAGTTAACTAAGATATAGGGCAAACACACTTCAGAACTCCATAATTACACTAGAACGATATTTTATAACTCTATACATCATTTTAGCTACAAAATTGAATTACTGCGTTTTATCGAAGAAGCTCGTACTTCTTTATTGAAGTAAGTATAAACATTCCAGTTCAAAATTTCTTAAGAATAATCTTAGTAAAGTCCGATACTTTGTATATCAAAACAAGAAAAGATCTGTCAAAGTAGAGTCAGTTGTAGTGATCCTATAACAGTGAAAAAAATACGTCGATGCACTGCTCTTAATCTACGTCGATGCACTGCTCTTAATCCAACCACAAAGATAGTTCGACTCGTTATGAAACACGAACGAGCAAAATCTTTTCCCATCAAGAACTTTATTTAAAATAGTAAACAAAAGAAAACCCATTTCTTTCCATACCCAAAACTCATAGTGGAGAGCCATTTTGGGGTCTCTCTCTCTATAAATATGGAGTGTTGTGAGTTTTCTTCTCCATATCATAAGGTGAGAGAATCAGGAAAAGACATAAAGATAAATTAATGGCTTCTCGATCTTCCCTTTACTTCTCTCTCCTCTTTTTCCTTCTCTCTACTGCCGCCATTGTTGCACCTTCTGAAGCTCGCAACATACCTGCAAATCCAATTGCAAGAACAGAAAGTAAGAACAAAACCCTCTTCTTCTTCATCACCATTTTTGTTCGTTATGAATTTTCTAAGTGTTCAAAAAATACTTTTGAATGTAATAGCGAAATTTAGATTTTCGATAGTTTGAATGAATTTTATGATTGGAAATGTTACAGGACATGATGAGATGATTGGATTACGAGACTATGGTGATGCTCGTGCCAATCATCGACACGAACCCCACCATCCTCTTGGTGTCGAAGGTAAGATTATAGTACTCGTAAATTATTATTTGAGAGTTGGGATGATATTTAACTCGTAATTTACTCTATTGTATATGAGAGTTAAAAACAGACAACCACATTAAATAATTTTCGATAATATATTATTAGGTGCTTCGTGTTTTTAGTTGGATTTATGTGTAGCTTAGAACGTAAGTATAAGATTTAGAATTTACTATGATTATATATTTTATGTCAGTTGAATTATGTTTACGATAAATTGACTTATTTATTGATTAATAATGATTTTATTTATTTTTGATAACTATAAATTTATCCTAAAATTCATAAATTTTTTATTTATTTGAACTAAATTCAACTCACGTAAATTTATAATTGAACTCAAATCAGTACAAATTGGATTGGGTTGATCAAATTTTCGGGCTTTTATGTGTGATCCCACATTGATTGGAGAGGGAAAAGAAACATTTCTTATCACGATGTAGAAACTTCTCCCTATTAGACGCATTTTAAAACCATAAGACAAACGACGATGGGTAATGAACCAAAGTGGACAATATCTACTAATGGTGGGTTTGAGCCGTTACAAATGATATCGATATCAGATCCAGACACCAAATGGTGTGCCATTAATGATGTTGGGTCCCCAATGGAGTGAATTGTGAGATCCCACATAAACATGAAGACAATATCTACCCGCGTGGACTTTGACAATTACATTAGATCTTCCTATTCCAATAGTTTACTCGATTCAATTTGTATGAATGATTATGTTCGTAGGTACTCGTAGTTGTTGTTCTTATTATTGTTTGTTAATTTTGGTAGGATATAAGAAGGAGTTGGATGATTAA

mRNA sequence

ATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATTGCCATTGGCCGACTCTGTGAGAAGTGTGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGTCCCTGTACGCTTGTTCGTGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTTATCTGTGGAGGAGTAGGAATCTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATCGTTAACTTAGGGAGTGCAAAAACAGACTTATTCTATGAACGAACTTTGCTCAACCAAATTAATGGAGAAGAAATTGTTGAAGAGGCTGTTGCAAACAGAAAAAAAGGTGAGAGAATCAGGAAAAGACATAAAGATAAATTAATGGCTTCTCGATCTTCCCTTTACTTCTCTCTCCTCTTTTTCCTTCTCTCTACTGCCGCCATTGTTGCACCTTCTGAAGCTCGCAACATACCTGCAAATCCAATTGCAAGAACAGAAAGACATGATGAGATGATTGGATTACGAGACTATGGTGATGCTCGTGCCAATCATCGACACGAACCCCACCATCCTCTTGGTGTCGAAGGATATAAGAAGGAGTTGGATGATTAA

Coding sequence (CDS)

ATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATTGCCATTGGCCGACTCTGTGAGAAGTGTGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGTCCCTGTACGCTTGTTCGTGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTTATCTGTGGAGGAGTAGGAATCTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATCGTTAACTTAGGGAGTGCAAAAACAGACTTATTCTATGAACGAACTTTGCTCAACCAAATTAATGGAGAAGAAATTGTTGAAGAGGCTGTTGCAAACAGAAAAAAAGGTGAGAGAATCAGGAAAAGACATAAAGATAAATTAATGGCTTCTCGATCTTCCCTTTACTTCTCTCTCCTCTTTTTCCTTCTCTCTACTGCCGCCATTGTTGCACCTTCTGAAGCTCGCAACATACCTGCAAATCCAATTGCAAGAACAGAAAGACATGATGAGATGATTGGATTACGAGACTATGGTGATGCTCGTGCCAATCATCGACACGAACCCCACCATCCTCTTGGTGTCGAAGGATATAAGAAGGAGTTGGATGATTAA

Protein sequence

MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERTLLNQINGEEIVEEAVANRKKGERIRKRHKDKLMASRSSLYFSLLFFLLSTAAIVAPSEARNIPANPIARTERHDEMIGLRDYGDARANHRHEPHHPLGVEGYKKELDD

Homology

[Close]

BLAST of Cp4.1LG02g11870 vs. Swiss-Prot
Match: PHF5A_ARATH (PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana GN=At2g30000 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-59
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. Swiss-Prot
Match: PHF5B_ARATH (PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-59
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. Swiss-Prot
Match: PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-55
Identity = 93/102 (91.18%), Postives = 98/102 (96.08%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYER
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. Swiss-Prot
Match: PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-55
Identity = 93/102 (91.18%), Postives = 98/102 (96.08%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYER
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. Swiss-Prot
Match: PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-55
Identity = 93/102 (91.18%), Postives = 98/102 (96.08%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYER
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. TrEMBL
Match: A0A0D9WFQ1_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. TrEMBL
Match: A0A161YNN0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018691 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. TrEMBL
Match: A0A061GW65_THECC (PHF5-like protein OS=Theobroma cacao GN=TCM_041599 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. TrEMBL
Match: A0A068UU41_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035270001 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. TrEMBL
Match: W5BZM2_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. TAIR10
Match: AT1G07170.1 (AT1G07170.1 PHF5-like protein)

HSP 1 Score: 230.7 bits (587), Expect = 8.2e-61
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. TAIR10
Match: AT2G30000.1 (AT2G30000.1 PHF5-like protein)

HSP 1 Score: 230.7 bits (587), Expect = 8.2e-61
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. NCBI nr
Match: gi|475621181|gb|EMT31378.1| (Zinc finger CCCH domain-containing protein 30 [Aegilops tauschii])

HSP 1 Score: 231.1 bits (588), Expect = 1.8e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. NCBI nr
Match: gi|351720989|ref|NP_001235659.1| (uncharacterized protein LOC100305969 [Glycine max])

HSP 1 Score: 231.1 bits (588), Expect = 1.8e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. NCBI nr
Match: gi|226494093|ref|NP_001152699.1| (PHD finger-like domain-containing protein 5A [Zea mays])

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-57
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. NCBI nr
Match: gi|414584946|tpg|DAA35517.1| (TPA: hypothetical protein ZEAMMB73_457709 [Zea mays])

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-57
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

[Close]

BLAST of Cp4.1LG02g11870 vs. NCBI nr
Match: gi|18390735|ref|NP_563782.1| (splicing factor 3b-like protein [Arabidopsis thaliana])

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-57
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 103
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYER 102

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g11870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PHF5A_ARATH	1.5e-59	99.02	PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana GN=At2g3000...	[more]
PHF5B_ARATH	1.5e-59	99.02	PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g0717...	[more]
PHF5A_HUMAN	1.7e-55	91.18	PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1	[more]
PHF5A_MOUSE	1.7e-55	91.18	PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1	[more]
PHF5A_RAT	1.7e-55	91.18	PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 ...	[more]

BLAST of Cp4.1LG02g11870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D9WFQ1_9ORYZ	1.2e-57	100.00	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]
A0A161YNN0_DAUCA	1.2e-57	100.00	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018691 PE=4 SV=1	[more]
A0A061GW65_THECC	1.2e-57	100.00	PHF5-like protein OS=Theobroma cacao GN=TCM_041599 PE=4 SV=1	[more]
A0A068UU41_COFCA	1.2e-57	100.00	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035270001 PE=4 SV=1	[more]
W5BZM2_WHEAT	1.2e-57	100.00	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]

BLAST of Cp4.1LG02g11870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07170.1	8.2e-61	99.02	PHF5-like protein	[more]
AT2G30000.1	8.2e-61	99.02	PHF5-like protein	[more]

BLAST of Cp4.1LG02g11870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|475621181\|gb\|EMT31378.1\|	1.8e-57	100.00	Zinc finger CCCH domain-containing protein 30 [Aegilops tauschii]	[more]
gi\|351720989\|ref\|NP_001235659.1\|	1.8e-57	100.00	uncharacterized protein LOC100305969 [Glycine max]	[more]
gi\|226494093\|ref\|NP_001152699.1\|	2.3e-57	99.02	PHD finger-like domain-containing protein 5A [Zea mays]	[more]
gi\|414584946\|tpg\|DAA35517.1\|	2.3e-57	99.02	TPA: hypothetical protein ZEAMMB73_457709 [Zea mays]	[more]
gi\|18390735\|ref\|NP_563782.1\|	2.3e-57	99.02	splicing factor 3b-like protein [Arabidopsis thaliana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005345	PHF5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g11870.1	Cp4.1LG02g11870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005345	PHF5-like	PANTHER	PTHR13120	FAMILY NOT NAMED	coord: 1..102 score: 6.9
IPR005345	PHF5-like	PFAM	PF03660	PHF5	coord: 1..102 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG02g11870	Cucsa.151610	Cucumber (Gy14) v1	cgycpeB0408
Cp4.1LG02g11870	CmaCh13G000570	Cucurbita maxima (Rimu)	cmacpeB245
Cp4.1LG02g11870	CmaCh01G006750	Cucurbita maxima (Rimu)	cmacpeB486
Cp4.1LG02g11870	CmoCh13G000480	Cucurbita moschata (Rifu)	cmocpeB211
Cp4.1LG02g11870	CmoCh01G007030	Cucurbita moschata (Rifu)	cmocpeB446
Cp4.1LG02g11870	Csa1G532270	Cucumber (Chinese Long) v2	cpecuB529
Cp4.1LG02g11870	MELO3C020538	Melon (DHL92) v3.5.1	cpemeB496
Cp4.1LG02g11870	ClCG03G000650	Watermelon (Charleston Gray)	cpewcgB503
Cp4.1LG02g11870	CSPI01G23990	Wild cucumber (PI 183967)	cpecpiB531
Cp4.1LG02g11870	Lsi02G012720	Bottle gourd (USVL1VR-Ls)	cpelsiB447
Cp4.1LG02g11870	MELO3C020538.2	Melon (DHL92) v3.6.1	cpemedB589
Cp4.1LG02g11870	CsaV3_1G036300	Cucumber (Chinese Long) v3	cpecucB0658
Cp4.1LG02g11870	Bhi08G000409	Wax gourd	cpewgoB0705
Cp4.1LG02g11870	CsGy1G023480	Cucumber (Gy14) v2	cgybcpeB091
Cp4.1LG02g11870	Carg07066	Silver-seed gourd	carcpeB0739
Cp4.1LG02g11870	Carg26028	Silver-seed gourd	carcpeB0878
Cp4.1LG02g11870	Carg20591	Silver-seed gourd	carcpeB0534

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG02g11870	Cp4.1LG20g07820	Cucurbita pepo (Zucchini)	cpecpeB430

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG02g11870	Watermelon (97103) v1	cpewmB551