MELO3C020538 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020538
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPHD finger-like domain-containing protein 5A
Locationchr12 : 656834 .. 660906 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATGAATAAAATGTAAGAGAAAAACCCTAAACTCTTTCATCTGTGCTCAAAGCCCACTTCTTCTTCTTCCTCTTCTTCCTCTTCAGGACGTCTCCTCCTCCTTTTCAGCAGCTCAGCCTCGCCTCCGCGGTCGCCGTCTACTTTCTTCTGTTCGTGCCGCCGGAGCCTCCCCTAGCGGTTTTTCACTGATTTTCTCACCCATTATTACTGGTATTCTCCCAGTTTCCATCTACGTTTTTGCTCTCACTTGAAAAACAACAATTAGAACTTTTCTGATGAAGAATAAAGGATTTGTTTGATTTTTTCTCATTTAATTTATAGCTGGATTGATTAATCGAACAACTTTATTCTTTTTTATATTTGTAGATTATAGTTGGGAAATGGACAATGGATTTTTTTCCCTTGTTCTTCGAAAACTGAAATTCTCTCTCTCCCTCAGATTAGCCAATAAAATGTTTAATAATCCTTTGAATTTATTGGAACAATGGGATTGTATATGCTCTGTACTTCATGTGCTTGATTCTAAAAATGGAGGTCTTGAATTGGATTAAAGAATCTCCGCCACTTTTACATACGGTACAGACCAAGAAACGTTGGGTTGAAACCTTAAGCTAATGACATAATGTTAGCCGGACCTGTCTATCTCTCTCTTTTGCCACCAAACTATCTGTGGCATTGAAGGAGAAAAAGAAATGGGGCAGGGGATGTCTAATGGTGCTAGGGTTGGGGTCATTTTCTAGTGTTTCATAGTTGGAATTGGGTAATTGCTTCTATGATTTCTAGGGTTACGGTTTATGTGGGATAAAGAATGAAGAAAGAGAGGAAGAAGAAATGGAAACAAGAGACAGAGAGTTGTAGTTATTTTTGTTGCCAGGTTACCAAAATTAATATACAAACTAATAGTTAGACACGTAATTGGTAACCTAAGCATCTAACTTGCTCAGTTGCTGCCAACCTAAGCAGAACTCAGCTATTTAAGGCACACATTCTTGACCGAGAGAAAAAAGAACTTGCTGAGTTACTGTTAGGATACCACTTGACAAGGTTCAAGAATACTCAAGAATAACTAGATCAACAATGAACATCAAAAGAAAGGAATCTATGAAAATTTGCTGTGATATCATAAGGTAAGTACCGAGACCATATAGCCTTTCGAGAGATCTAGTCTCTCACTAATTCCCTAAAGGAAATCTGACAAAATTCTTCACACCTTGTTTCCAAGTTCCCAACTTTTTCTAACTAAAAGCCTACTTACTATCTAATTACTAATATGCTCCTTCTAATAACCATGCCAATATTCTACAAATAATCCTACCTAATGGAAGAAGGTTCTTTGGGCTTATTAACTTGTTGTTGTTGTTATGTCAATATGCTTGTGTTTAATGAAACTTATGAACATAGGCACAATCAAAGTGTGAACATAGATAGGCACAACCAAAGTGTGGTGAAATTTTAAGGAGATAGGAGATTGAATTTTAATGTACATCTTTCCAAATGAAATGCTTTTTTGGAAATAGATGATGTGCATCTGTGATCTGTCTAAATGATTCTTCTCTTCTTCTTCTTCTTCTTGTGTCTATATGCTTGTATTTAATGGAACTTATGAACGTTGGCACAACCAATGTGTGGTGAAATTTTAAGGAGCTAGGAGATTGAATTTTAATGTGCATCTGAATAAATAAAATGCTTTTTTTGGAAATAGATAATGCACATCTGTCTAAAGGATTCTTTTTCTTCTTCTTCTTCTTGCTTGTGTTTATGGAACTTGTGAACGTAGGCACAACCAAAGTGCGGTGAAATTTTAAGGAGATAGGAGATTGAATTTTAATGTGCATCTGTCTAAATGAAATGTTTCTTTTGGAATAGATAACGTGCATCTGTCTAAATGAAAACAATCAGAGGATTGAAATGCTAATAATTGAAAATATTTTATTTTGTTGTATTACTATAACAATGTTCAAATGCTCCTAAATAAACAGGCATGGAGAACATGTTCAAAATTGTGAAACAGTGACAACTAAGGAAGTGTGATTAGTGCCTTTACCTACTGGCTAATTTTGCTGACCTAGCTCTGTATTTTTTTTCTATTTTTCCCTTGGAGGGATGATTACATGAGTCTGAATAGGATTGTAATGGTTGGAGAGCTTTGTGATAAGTTCTACAGTGGAGGTTTATTCAATCCATACGTTTTCAAGTTGCCATCTAAGAGACTTGTCATCAATATTCACCATCCTAGTTTTTTTTTTTTTAAGATGAAACCAACAACTTTCATTGGTGATTCTCATAATTGAATGGAGTCATACACCTTTTGGTCTTAATCTTGCTTGCATCCTCGGGTTTACTTGAAGAACTCAAGGATATAGTGGTACAACCTATTGAACAAATGATTCTACACGTTTTCAGTACTCTTGAATGCTTTGATCTCGATTATCTTTCCCCCTCGTATAGGCCATTTTTTAAAAGCAAAAACTATTTATGAAAAGCCACTTTTATTGAAGGAAAAAATGAAGGAAGATATAGGATTTCAAAACAGAAGTCTTAGGGAGATGGGCAACACAAAAGGGCTTTAGCTATGTAAAAGAAGGCTAAAAGTACAATTAGAAAGAGACTTGGTCACTGAATTCCGGAGGGAAACATAGAATCTAACGAAAGACCAAACATCTCTCCAAGAACTCTTTTGAGTCCTGACTTGGGGTATTCATTGGTTGTTTGACATCGATTTTGGGCTAGAACCAATTCCAACTAGTTGGTTTTTATTGGTTGGTGATGATCGGTTTTTAAGAAATAGGATGCGCTGATCGAGTGACCACATCAGCAGTCGGTCGGTTTTGGTAGTCATCATAGTAAGTGCGGACCTCTAAAAAGAAGAGAACAAGAAAAGAAGAAGAGAATAAGAAAAGAGACGAATTGGCAAACTCCAACCTGTTGGTCCATGATTTTGTCAAGTTTCCAGTTAAATTATTCACTTGGTATTTGGAAATTCCAACTTCATTGTGAATATATAGTAGACCCCATATTTTGGATGCATATTTTGTTGGTTTTTTTTAAAACAGTAGCTTTTTATGAAGATTGGATTTTAAGTTCGGTTCTAGTCTATGCAGTTTTACATCATATTTAGCCTGTGCTTCAATTTCAATGACCAAATATCAAGATATGCAACAGTCGTTTGCATTTGTAACAGTGCAACTATAATGATCCTTTACTCAAATATGAAGTGATAGAAGATGATCTTATTGCCTGTGGTTAGACGGTCGATGTGAATTATGCCATCCGTCTACGAACTAGAAAGATGTAAACAAATATATGCATACATTAGGAATTGCTATTCTCCCATCGGTTTTATTTTATTTTAAATTATTATTATTATTTTTATTTGGTTAATTCATATGCCTAACCGTTTATTTTCTTAAAAGAGTTACCTTAGTCGGGGTTCATGAGATTAATTTTAACATTTCAAGTTTGAAAACATGTCTTCAGGTTACAAATTTTACTGGAACTTGATAGATTGTTGCGGTTGCATAAGCCATGGCCAAGCATCATCCTGATTTGATAATGTGCAGAAAGCAGCCAGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGACCCTGTACGCTTGTTCGTGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCTTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGATGAAGCAAAAACACATTGAGTTTCCTTCCTAAGATGGATCTTACTGTAATATGATGAATTTCTGACATCTAATCTCAAAACTCTCTTAGACATGTATGTATATGCTGATGAGTCAGAATGAGAACAGTTGTTGGGGCTAAGGCAATTCATAAGAATTAAAACTTTATCAATTGTATTGTGTCTTTTGAGTACAACTGTGGCAGACAGATTGAACC

mRNA sequence

AAAAATGAATAAAATGTAAGAGAAAAACCCTAAACTCTTTCATCTGTGCTCAAAGCCCACTTCTTCTTCTTCCTCTTCTTCCTCTTCAGGACGTCTCCTCCTCCTTTTCAGCAGCTCAGCCTCGCCTCCGCGGTCGCCGTCTACTTTCTTCTGTTCGTGCCGCCGGAGCCTCCCCTAGCGGTTTTTCACTGATTTTCTCACCCATTATTACTGGTTACAAATTTTACTGGAACTTGATAGATTGTTGCGGTTGCATAAGCCATGGCCAAGCATCATCCTGATTTGATAATGTGCAGAAAGCAGCCAGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGACCCTGTACGCTTGTTCGTGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCTTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGATGAAGCAAAAACACATTGAGTTTCCTTCCTAAGATGGATCTTACTGTAATATGATGAATTTCTGACATCTAATCTCAAAACTCTCTTAGACATGTATGTATATGCTGATGAGTCAGAATGAGAACAGTTGTTGGGGCTAAGGCAATTCATAAGAATTAAAACTTTATCAATTGTATTGTGTCTTTTGAGTACAACTGTGGCAGACAGATTGAACC

Coding sequence (CDS)

ATGGCCAAGCATCATCCTGATTTGATAATGTGCAGAAAGCAGCCAGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGACCCTGTACGCTTGTTCGTGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCTTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGATGA

Protein sequence

MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR*
Homology
[Close]
BLAST of MELO3C020538 vs. Swiss-Prot
Match: PHF5A_ARATH (PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana GN=At2g30000 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.9e-64
Identity = 109/110 (99.09%), Postives = 108/110 (98.18%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. Swiss-Prot
Match: PHF5B_ARATH (PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.9e-64
Identity = 109/110 (99.09%), Postives = 108/110 (98.18%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. Swiss-Prot
Match: PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.5e-60
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. Swiss-Prot
Match: PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.5e-60
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. Swiss-Prot
Match: PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.5e-60
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. TrEMBL
Match: C6SXE4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G173100 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. TrEMBL
Match: A0A0E0DJK7_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. TrEMBL
Match: A9P9G1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28430g PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. TrEMBL
Match: A0A0K9Q643_ZOSMR (Pre-mRNA-splicing factor ini1 OS=Zostera marina GN=ZOSMA_105G00570 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. TrEMBL
Match: A0A0D3G1A3_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. TAIR10
Match: AT1G07170.1 (AT1G07170.1 PHF5-like protein)

HSP 1 Score: 245.0 bits (624), Expect = 2.2e-65
Identity = 109/110 (99.09%), Postives = 108/110 (98.18%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. TAIR10
Match: AT2G30000.1 (AT2G30000.1 PHF5-like protein)

HSP 1 Score: 245.0 bits (624), Expect = 2.2e-65
Identity = 109/110 (99.09%), Postives = 108/110 (98.18%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. NCBI nr
Match: gi|351720989|ref|NP_001235659.1| (uncharacterized protein LOC100305969 [Glycine max])

HSP 1 Score: 245.4 bits (625), Expect = 4.8e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. NCBI nr
Match: gi|226494093|ref|NP_001152699.1| (PHD finger-like domain-containing protein 5A [Zea mays])

HSP 1 Score: 245.0 bits (624), Expect = 6.3e-62
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. NCBI nr
Match: gi|18390735|ref|NP_563782.1| (splicing factor 3b-like protein [Arabidopsis thaliana])

HSP 1 Score: 245.0 bits (624), Expect = 6.3e-62
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of MELO3C020538 vs. NCBI nr
Match: gi|922467047|ref|XP_013633804.1| (PREDICTED: PHD finger-like domain-containing protein 5B [Brassica oleracea var. oleracea])

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-62
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 48  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCVI 107

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 108 CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 157

[Close]
BLAST of MELO3C020538 vs. NCBI nr
Match: gi|685300614|ref|XP_009141029.1| (PREDICTED: PHD finger-like domain-containing protein 5B [Brassica rapa])

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-62
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

The following BLAST results are available for this feature:
BLAST of MELO3C020538 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PHF5A_ARATH3.9e-6499.09PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana GN=At2g3000... [more]
PHF5B_ARATH3.9e-6499.09PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g0717... [more]
PHF5A_HUMAN4.5e-6091.82PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1[more]
PHF5A_MOUSE4.5e-6091.82PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1[more]
PHF5A_RAT4.5e-6091.82PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 ... [more]
BLAST of MELO3C020538 vs. TrEMBL
Match NameE-valueIdentityDescription
C6SXE4_SOYBN3.4e-62100.00Uncharacterized protein OS=Glycine max GN=GLYMA_11G173100 PE=2 SV=1[more]
A0A0E0DJK7_9ORYZ3.4e-62100.00Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1[more]
A9P9G1_POPTR3.4e-62100.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28430g PE=2 SV=1[more]
A0A0K9Q643_ZOSMR3.4e-62100.00Pre-mRNA-splicing factor ini1 OS=Zostera marina GN=ZOSMA_105G00570 PE=4 SV=1[more]
A0A0D3G1A3_9ORYZ3.4e-62100.00Uncharacterized protein OS=Oryza barthii PE=4 SV=1[more]
BLAST of MELO3C020538 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07170.12.2e-6599.09 PHF5-like protein[more]
AT2G30000.12.2e-6599.09 PHF5-like protein[more]
BLAST of MELO3C020538 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|351720989|ref|NP_001235659.1|4.8e-62100.00uncharacterized protein LOC100305969 [Glycine max][more]
gi|226494093|ref|NP_001152699.1|6.3e-6299.09PHD finger-like domain-containing protein 5A [Zea mays][more]
gi|18390735|ref|NP_563782.1|6.3e-6299.09splicing factor 3b-like protein [Arabidopsis thaliana][more]
gi|922467047|ref|XP_013633804.1|8.2e-6298.18PREDICTED: PHD finger-like domain-containing protein 5B [Brassica oleracea var. ... [more]
gi|685300614|ref|XP_009141029.1|8.2e-6298.18PREDICTED: PHD finger-like domain-containing protein 5B [Brassica rapa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005345PHF5
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009735 response to cytokinin
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009052 pentose-phosphate shunt, non-oxidative branch
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005575 cellular_component
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0003924 GTPase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0004751 ribose-5-phosphate isomerase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU46982melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020538T1MELO3C020538T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU46982MU46982transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005345PHF5-likePIRPIRSF016468RDS3pcoord: 1..110
score: 1.2
IPR005345PHF5-likePANTHERPTHR13120FAMILY NOT NAMEDcoord: 1..110
score: 1.0E
IPR005345PHF5-likePFAMPF03660PHF5coord: 1..104
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C020538Csa1G532280Cucumber (Chinese Long) v2cumeB028
MELO3C020538Cla97C03G051440Watermelon (97103) v2mewmbB153
MELO3C020538Bhi08G000409Wax gourdmewgoB161
MELO3C020538CSPI01G24000Wild cucumber (PI 183967)cpimeB025
MELO3C020538Cucsa.151610Cucumber (Gy14) v1cgymeB255
MELO3C020538CmaCh13G000570Cucurbita maxima (Rimu)cmameB194
MELO3C020538CmaCh01G006750Cucurbita maxima (Rimu)cmameB391
MELO3C020538CmoCh01G007040Cucurbita moschata (Rifu)cmomeB382
MELO3C020538CmoCh13G000480Cucurbita moschata (Rifu)cmomeB181
MELO3C020538Lsi02G012720Bottle gourd (USVL1VR-Ls)lsimeB174
MELO3C020538Cp4.1LG20g07820Cucurbita pepo (Zucchini)cpemeB479
MELO3C020538Cp4.1LG02g11870Cucurbita pepo (Zucchini)cpemeB496
MELO3C020538CsGy1G023490Cucumber (Gy14) v2cgybmeB023
MELO3C020538Carg26028Silver-seed gourdcarmeB0618
MELO3C020538Carg07066Silver-seed gourdcarmeB0522
MELO3C020538Carg20591Silver-seed gourdcarmeB0388
MELO3C020538CsaV3_1G036310Cucumber (Chinese Long) v3cucmeB025
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020538Wax gourdmewgoB152
MELO3C020538Melon (DHL92) v3.5.1memeB069
MELO3C020538Melon (DHL92) v3.5.1memeB072
MELO3C020538Cucumber (Gy14) v1cgymeB220
MELO3C020538Cucumber (Gy14) v1cgymeB313
MELO3C020538Cucurbita maxima (Rimu)cmameB216
MELO3C020538Cucurbita maxima (Rimu)cmameB666
MELO3C020538Cucurbita maxima (Rimu)cmameB667
MELO3C020538Cucurbita maxima (Rimu)cmameB669
MELO3C020538Cucurbita maxima (Rimu)cmameB750
MELO3C020538Cucurbita moschata (Rifu)cmomeB201
MELO3C020538Cucurbita moschata (Rifu)cmomeB658
MELO3C020538Cucurbita moschata (Rifu)cmomeB661
MELO3C020538Cucurbita moschata (Rifu)cmomeB662
MELO3C020538Cucurbita moschata (Rifu)cmomeB742
MELO3C020538Wild cucumber (PI 183967)cpimeB180
MELO3C020538Wild cucumber (PI 183967)cpimeB454
MELO3C020538Cucumber (Chinese Long) v2cumeB185
MELO3C020538Cucumber (Chinese Long) v2cumeB459
MELO3C020538Watermelon (Charleston Gray)mewcgB128
MELO3C020538Watermelon (Charleston Gray)mewcgB155
MELO3C020538Watermelon (Charleston Gray)mewcgB149
MELO3C020538Watermelon (97103) v1mewmB145
MELO3C020538Watermelon (97103) v1mewmB146
MELO3C020538Watermelon (97103) v1mewmB175
MELO3C020538Cucurbita pepo (Zucchini)cpemeB390
MELO3C020538Bottle gourd (USVL1VR-Ls)lsimeB245
MELO3C020538Cucumber (Gy14) v2cgybmeB398
MELO3C020538Silver-seed gourdcarmeB0159
MELO3C020538Silver-seed gourdcarmeB0663
MELO3C020538Silver-seed gourdcarmeB0971
MELO3C020538Cucumber (Chinese Long) v3cucmeB465
MELO3C020538Watermelon (97103) v2mewmbB148
MELO3C020538Watermelon (97103) v2mewmbB160