CmoCh13G000480 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G000480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPHD finger-like domain-containing protein 5A
LocationCmo_Chr13 : 286693 .. 287025 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATCGCCATTGGCCGACTTTGTGAGAAGTGCGACGGGAAGTGTGTAATATGTGATTCTTATGTCCGTCCCTGTACTCTCGTTCGGGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGGCGGTGTGTGATCTGTGGAGGAGTAGGAATCTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGACAGAGATGGATGTCCAAAGATTGTTAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGCAAGAAATATGGGTTCAAGAAACGGTGA

mRNA sequence

ATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATCGCCATTGGCCGACTTTGTGAGAAGTGCGACGGGAAGTGTGTAATATGTGATTCTTATGTCCGTCCCTGTACTCTCGTTCGGGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGGCGGTGTGTGATCTGTGGAGGAGTAGGAATCTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGACAGAGATGGATGTCCAAAGATTGTTAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGCAAGAAATATGGGTTCAAGAAACGGTGA

Coding sequence (CDS)

ATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATCGCCATTGGCCGACTTTGTGAGAAGTGCGACGGGAAGTGTGTAATATGTGATTCTTATGTCCGTCCCTGTACTCTCGTTCGGGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGGCGGTGTGTGATCTGTGGAGGAGTAGGAATCTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGACAGAGATGGATGTCCAAAGATTGTTAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGCAAGAAATATGGGTTCAAGAAACGGTGA
Homology
[Close]
BLAST of CmoCh13G000480 vs. Swiss-Prot
Match: PHF5A_ARATH (PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana GN=At2g30000 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-64
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. Swiss-Prot
Match: PHF5B_ARATH (PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-64
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. Swiss-Prot
Match: PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-60
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. Swiss-Prot
Match: PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-60
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. Swiss-Prot
Match: PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-60
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. TrEMBL
Match: K4DCC1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 8.8e-63
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. TrEMBL
Match: A0A0V0H5M6_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 8.8e-63
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. TrEMBL
Match: C6SXE4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G173100 PE=2 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 8.8e-63
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. TrEMBL
Match: Q01K32_ORYSA (OSIGBa0099L20.4 protein OS=Oryza sativa GN=OSIGBa0099L20.4 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 8.8e-63
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. TrEMBL
Match: A0A0E0PLI0_ORYRU (Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 8.8e-63
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. TAIR10
Match: AT1G07170.1 (AT1G07170.1 PHF5-like protein)

HSP 1 Score: 246.9 bits (629), Expect = 5.8e-66
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. TAIR10
Match: AT2G30000.1 (AT2G30000.1 PHF5-like protein)

HSP 1 Score: 246.9 bits (629), Expect = 5.8e-66
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. NCBI nr
Match: gi|351720989|ref|NP_001235659.1| (uncharacterized protein LOC100305969 [Glycine max])

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. NCBI nr
Match: gi|226494093|ref|NP_001152699.1| (PHD finger-like domain-containing protein 5A [Zea mays])

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-62
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. NCBI nr
Match: gi|18390735|ref|NP_563782.1| (splicing factor 3b-like protein [Arabidopsis thaliana])

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-62
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of CmoCh13G000480 vs. NCBI nr
Match: gi|922467047|ref|XP_013633804.1| (PREDICTED: PHD finger-like domain-containing protein 5B [Brassica oleracea var. oleracea])

HSP 1 Score: 246.5 bits (628), Expect = 2.1e-62
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 48  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCVI 107

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 108 CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 157

[Close]
BLAST of CmoCh13G000480 vs. NCBI nr
Match: gi|685300614|ref|XP_009141029.1| (PREDICTED: PHD finger-like domain-containing protein 5B [Brassica rapa])

HSP 1 Score: 246.5 bits (628), Expect = 2.1e-62
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

The following BLAST results are available for this feature:
BLAST of CmoCh13G000480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PHF5A_ARATH1.0e-6499.09PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana GN=At2g3000... [more]
PHF5B_ARATH1.0e-6499.09PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g0717... [more]
PHF5A_HUMAN1.2e-6091.82PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1[more]
PHF5A_MOUSE1.2e-6091.82PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1[more]
PHF5A_RAT1.2e-6091.82PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 ... [more]
BLAST of CmoCh13G000480 vs. TrEMBL
Match NameE-valueIdentityDescription
K4DCC1_SOLLC8.8e-63100.00Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0V0H5M6_SOLCH8.8e-63100.00Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
C6SXE4_SOYBN8.8e-63100.00Uncharacterized protein OS=Glycine max GN=GLYMA_11G173100 PE=2 SV=1[more]
Q01K32_ORYSA8.8e-63100.00OSIGBa0099L20.4 protein OS=Oryza sativa GN=OSIGBa0099L20.4 PE=4 SV=1[more]
A0A0E0PLI0_ORYRU8.8e-63100.00Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1[more]
BLAST of CmoCh13G000480 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07170.15.8e-6699.09 PHF5-like protein[more]
AT2G30000.15.8e-6699.09 PHF5-like protein[more]
BLAST of CmoCh13G000480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|351720989|ref|NP_001235659.1|1.3e-62100.00uncharacterized protein LOC100305969 [Glycine max][more]
gi|226494093|ref|NP_001152699.1|1.6e-6299.09PHD finger-like domain-containing protein 5A [Zea mays][more]
gi|18390735|ref|NP_563782.1|1.6e-6299.09splicing factor 3b-like protein [Arabidopsis thaliana][more]
gi|922467047|ref|XP_013633804.1|2.1e-6298.18PREDICTED: PHD finger-like domain-containing protein 5B [Brassica oleracea var. ... [more]
gi|685300614|ref|XP_009141029.1|2.1e-6298.18PREDICTED: PHD finger-like domain-containing protein 5B [Brassica rapa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005345PHF5
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042742 defense response to bacterium
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009052 pentose-phosphate shunt, non-oxidative branch
biological_process GO:0009735 response to cytokinin
cellular_component GO:0005575 cellular_component
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005686 U2 snRNP
molecular_function GO:0003674 molecular_function
molecular_function GO:0004751 ribose-5-phosphate isomerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G000480.1CmoCh13G000480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005345PHF5-likePIRPIRSF016468RDS3pcoord: 1..110
score: 1.2
IPR005345PHF5-likePANTHERPTHR13120FAMILY NOT NAMEDcoord: 1..110
score: 1.0E
IPR005345PHF5-likePFAMPF03660PHF5coord: 1..104
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh13G000480Cucsa.151610Cucumber (Gy14) v1cgycmoB0418
CmoCh13G000480CmaCh01G006750Cucurbita maxima (Rimu)cmacmoB458
CmoCh13G000480CmaCh13G000570Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G000480Csa1G532280Cucumber (Chinese Long) v2cmocuB204
CmoCh13G000480MELO3C020538Melon (DHL92) v3.5.1cmomeB181
CmoCh13G000480CSPI01G24000Wild cucumber (PI 183967)cmocpiB206
CmoCh13G000480Lsi02G012720Bottle gourd (USVL1VR-Ls)cmolsiB191
CmoCh13G000480Cp4.1LG02g11870Cucurbita pepo (Zucchini)cmocpeB211
CmoCh13G000480Cp4.1LG20g07820Cucurbita pepo (Zucchini)cmocpeB202
CmoCh13G000480MELO3C020538.2Melon (DHL92) v3.6.1cmomedB203
CmoCh13G000480CsaV3_1G036310Cucumber (Chinese Long) v3cmocucB0236
CmoCh13G000480Cla97C03G051440Watermelon (97103) v2cmowmbB209
CmoCh13G000480Bhi08G000409Wax gourdcmowgoB0245
CmoCh13G000480CsGy1G023490Cucumber (Gy14) v2cgybcmoB069
CmoCh13G000480Carg26028Silver-seed gourdcarcmoB0843
CmoCh13G000480Carg07066Silver-seed gourdcarcmoB0705
CmoCh13G000480Carg20591Silver-seed gourdcarcmoB0517
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh13G000480CmoCh01G007040Cucurbita moschata (Rifu)cmocmoB173
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G000480Watermelon (97103) v2cmowmbB204
CmoCh13G000480Wax gourdcmowgoB0238
CmoCh13G000480Cucurbita moschata (Rifu)cmocmoB180
CmoCh13G000480Cucurbita moschata (Rifu)cmocmoB186
CmoCh13G000480Cucurbita moschata (Rifu)cmocmoB187
CmoCh13G000480Cucumber (Gy14) v1cgycmoB0384
CmoCh13G000480Cucumber (Gy14) v1cgycmoB0417
CmoCh13G000480Cucurbita maxima (Rimu)cmacmoB577
CmoCh13G000480Watermelon (Charleston Gray)cmowcgB180
CmoCh13G000480Watermelon (Charleston Gray)cmowcgB184
CmoCh13G000480Watermelon (97103) v1cmowmB173
CmoCh13G000480Watermelon (97103) v1cmowmB197
CmoCh13G000480Cucurbita pepo (Zucchini)cmocpeB198
CmoCh13G000480Bottle gourd (USVL1VR-Ls)cmolsiB186
CmoCh13G000480Silver-seed gourdcarcmoB0913