Csa1G532280 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G532280
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPHD finger-like domain-containing protein 5A; contains IPR005345 (PHF5-like)
LocationChr1 : 18772746 .. 18773078 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGCATCATCCTGATTTGATCATGTGCAGAAAGCAGCCAGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGCCCCTGTACACTTGTTCGAGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCTTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGATGA

mRNA sequence

ATGGCCAAGCATCATCCTGATTTGATCATGTGCAGAAAGCAGCCAGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGCCCCTGTACACTTGTTCGAGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCTTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGATGA

Coding sequence (CDS)

ATGGCCAAGCATCATCCTGATTTGATCATGTGCAGAAAGCAGCCAGGAATTGCAATTGGCCGCCTATGTGAGAAGTGCGATGGGAAGTGTGTAATCTGTGATTCTTATGTCCGCCCCTGTACACTTGTTCGAGTTTGTGACGAATGCAATTACGGGTCTTTCCAAGGCCGTTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCTTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGCCCAAAGATTGTTAATTTAGGCAGTGCAAAAACAGATTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGATGA

Protein sequence

MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR*
Homology
[Close]
BLAST of Csa1G532280 vs. Swiss-Prot
Match: PHF5A_ARATH (PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana GN=At2g30000 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.9e-64
Identity = 109/110 (99.09%), Postives = 108/110 (98.18%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. Swiss-Prot
Match: PHF5B_ARATH (PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.9e-64
Identity = 109/110 (99.09%), Postives = 108/110 (98.18%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. Swiss-Prot
Match: PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.5e-60
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. Swiss-Prot
Match: PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.5e-60
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. Swiss-Prot
Match: PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.5e-60
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVI
Sbjct: 1   MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct: 61  CGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. TrEMBL
Match: C6SXE4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G173100 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. TrEMBL
Match: A0A0E0DJK7_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. TrEMBL
Match: A9P9G1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28430g PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. TrEMBL
Match: A0A0K9Q643_ZOSMR (Pre-mRNA-splicing factor ini1 OS=Zostera marina GN=ZOSMA_105G00570 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. TrEMBL
Match: A0A0D3G1A3_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. TAIR10
Match: AT1G07170.1 (AT1G07170.1 PHF5-like protein)

HSP 1 Score: 245.0 bits (624), Expect = 2.2e-65
Identity = 109/110 (99.09%), Postives = 108/110 (98.18%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. TAIR10
Match: AT2G30000.1 (AT2G30000.1 PHF5-like protein)

HSP 1 Score: 245.0 bits (624), Expect = 2.2e-65
Identity = 109/110 (99.09%), Postives = 108/110 (98.18%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. NCBI nr
Match: gi|351720989|ref|NP_001235659.1| (uncharacterized protein LOC100305969 [Glycine max])

HSP 1 Score: 245.4 bits (625), Expect = 4.8e-62
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. NCBI nr
Match: gi|226494093|ref|NP_001152699.1| (PHD finger-like domain-containing protein 5A [Zea mays])

HSP 1 Score: 245.0 bits (624), Expect = 6.3e-62
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVRVCDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRVCDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. NCBI nr
Match: gi|18390735|ref|NP_563782.1| (splicing factor 3b-like protein [Arabidopsis thaliana])

HSP 1 Score: 245.0 bits (624), Expect = 6.3e-62
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

[Close]
BLAST of Csa1G532280 vs. NCBI nr
Match: gi|922467047|ref|XP_013633804.1| (PREDICTED: PHD finger-like domain-containing protein 5B [Brassica oleracea var. oleracea])

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-62
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 48  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCVI 107

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 108 CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 157

[Close]
BLAST of Csa1G532280 vs. NCBI nr
Match: gi|685300614|ref|XP_009141029.1| (PREDICTED: PHD finger-like domain-containing protein 5B [Brassica rapa])

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-62
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 111
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110

The following BLAST results are available for this feature:
BLAST of Csa1G532280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PHF5A_ARATH3.9e-6499.09PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana GN=At2g3000... [more]
PHF5B_ARATH3.9e-6499.09PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g0717... [more]
PHF5A_HUMAN4.5e-6091.82PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1[more]
PHF5A_MOUSE4.5e-6091.82PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1[more]
PHF5A_RAT4.5e-6091.82PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 ... [more]
BLAST of Csa1G532280 vs. TrEMBL
Match NameE-valueIdentityDescription
C6SXE4_SOYBN3.4e-62100.00Uncharacterized protein OS=Glycine max GN=GLYMA_11G173100 PE=2 SV=1[more]
A0A0E0DJK7_9ORYZ3.4e-62100.00Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1[more]
A9P9G1_POPTR3.4e-62100.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28430g PE=2 SV=1[more]
A0A0K9Q643_ZOSMR3.4e-62100.00Pre-mRNA-splicing factor ini1 OS=Zostera marina GN=ZOSMA_105G00570 PE=4 SV=1[more]
A0A0D3G1A3_9ORYZ3.4e-62100.00Uncharacterized protein OS=Oryza barthii PE=4 SV=1[more]
BLAST of Csa1G532280 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07170.12.2e-6599.09 PHF5-like protein[more]
AT2G30000.12.2e-6599.09 PHF5-like protein[more]
BLAST of Csa1G532280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|351720989|ref|NP_001235659.1|4.8e-62100.00uncharacterized protein LOC100305969 [Glycine max][more]
gi|226494093|ref|NP_001152699.1|6.3e-6299.09PHD finger-like domain-containing protein 5A [Zea mays][more]
gi|18390735|ref|NP_563782.1|6.3e-6299.09splicing factor 3b-like protein [Arabidopsis thaliana][more]
gi|922467047|ref|XP_013633804.1|8.2e-6298.18PREDICTED: PHD finger-like domain-containing protein 5B [Brassica oleracea var. ... [more]
gi|685300614|ref|XP_009141029.1|8.2e-6298.18PREDICTED: PHD finger-like domain-containing protein 5B [Brassica rapa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005345PHF5
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042742 defense response to bacterium
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009052 pentose-phosphate shunt, non-oxidative branch
biological_process GO:0009735 response to cytokinin
cellular_component GO:0005575 cellular_component
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005686 U2 snRNP
molecular_function GO:0003674 molecular_function
molecular_function GO:0004751 ribose-5-phosphate isomerase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU095924cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G532280.1Csa1G532280.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU095924CU095924transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005345PHF5-likePIRPIRSF016468RDS3pcoord: 1..110
score: 1.2
IPR005345PHF5-likePANTHERPTHR13120FAMILY NOT NAMEDcoord: 1..110
score: 1.0E
IPR005345PHF5-likePFAMPF03660PHF5coord: 1..104
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G532280MELO3C020538Melon (DHL92) v3.5.1cumeB028
Csa1G532280Lsi02G012720Bottle gourd (USVL1VR-Ls)culsiB030
Csa1G532280MELO3C020538.2Melon (DHL92) v3.6.1cumedB023
Csa1G532280Cla97C03G051440Watermelon (97103) v2cuwmbB043
Csa1G532280Bhi08G000409Wax gourdcuwgoB048
Csa1G532280CSPI01G24000Wild cucumber (PI 183967)cpicuB001
Csa1G532280Cucsa.151610Cucumber (Gy14) v1cgycuB219
Csa1G532280CmaCh01G006750Cucurbita maxima (Rimu)cmacuB427
Csa1G532280CmaCh13G000570Cucurbita maxima (Rimu)cmacuB219
Csa1G532280CmoCh01G007040Cucurbita moschata (Rifu)cmocuB416
Csa1G532280CmoCh13G000480Cucurbita moschata (Rifu)cmocuB204
Csa1G532280Cp4.1LG20g07820Cucurbita pepo (Zucchini)cpecuB507
Csa1G532280CsGy1G023490Cucumber (Gy14) v2cgybcuB002
Csa1G532280Carg26028Silver-seed gourdcarcuB0641
Csa1G532280Carg07066Silver-seed gourdcarcuB0550
Csa1G532280Carg20591Silver-seed gourdcarcuB0412
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G532280Cucumber (Gy14) v1cgycuB267
Csa1G532280Cucurbita maxima (Rimu)cmacuB234
Csa1G532280Cucurbita maxima (Rimu)cmacuB688
Csa1G532280Cucurbita maxima (Rimu)cmacuB689
Csa1G532280Cucurbita moschata (Rifu)cmocuB220
Csa1G532280Cucurbita moschata (Rifu)cmocuB677
Csa1G532280Cucurbita moschata (Rifu)cmocuB678
Csa1G532280Melon (DHL92) v3.5.1cumeB064
Csa1G532280Watermelon (Charleston Gray)cuwcgB004
Csa1G532280Watermelon (Charleston Gray)cuwcgB047
Csa1G532280Watermelon (97103) v1cuwmB004
Csa1G532280Watermelon (97103) v1cuwmB021
Csa1G532280Cucurbita pepo (Zucchini)cpecuB382
Csa1G532280Cucurbita pepo (Zucchini)cpecuB529
Csa1G532280Melon (DHL92) v3.6.1cumedB058
Csa1G532280Silver-seed gourdcarcuB0171
Csa1G532280Silver-seed gourdcarcuB0680
Csa1G532280Silver-seed gourdcarcuB1010
Csa1G532280Watermelon (97103) v2cuwmbB015
Csa1G532280Cucumber (Chinese Long) v2cucuB020