Csa1G132710 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G132710
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Cyclin-dependent kinases regulatory subunit, putative; contains IPR000789 (Cyclin-dependent kinase, regulatory subunit)
Location	Chr1 : 9457403 .. 9458435 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGTCTGAGATTTCTCTTCGATGGTTTTTTTCATCGACATGGTTTGATTCTCATGGGGTTTGTTTTTTTTTTTCTTTTTTTCTTTTTTGTTGATGTTTGTTGTAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAGTAAGTATTTCATGATTCTTCTCTATAATCATTATTTCTTGGGTCGAATCCTGTTTTGATAGTCGGAAACGAACTAAATTGGAAGTGGAAGAGATTTCTCTCACAATCATCGGCTGCTTTCAATGTGATTGTGCGATATAATCTGAATACATTTGAGATCTGTGTAGTTTGATTATGCAATAGATTGATTGCGTGATGATTAATCTGAATACATTTGAGATCTTTGTAGTTGGATTATGCAATAGATTGATTGCGTGATGATTAATCTGAAGTAAATATATCATAATTTCTTGTGTGAAATCCTGTTCCGCTAATTGAAAAGAAAATGAACTAAAAAATTGAAAGAGATCTCTCTCATAATCTGAATACCTTTAAGATGAAGTAATGGAATTTGATGTTGATGATGAACAGAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAAATTGGTTTATTGTCCTTTTTTTTCCTTTAGACACACTATAATGAGAAATATCTCACTACAAAACAAAAAAAAATTAAGTGTTTGTGGTTTGTTGTGTGGTGTAGTTTCCTTCTCCAATTTGGAGAAGCTTTGTGGCCCAGTTAGATCTTTGTCATAGTCATTAATCAATTCCCCACCATTGTTCATGAATTTGTGGTTTTAATTTGCTTTTGATATAAGCGTGGTTCTTATCTTCTCTTCTTCTTGGCTGCC

mRNA sequence

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAA

Coding sequence (CDS)

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAA

Protein sequence

MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQILAK*

Homology

[Close]

BLAST of Csa1G132710 vs. Swiss-Prot
Match: CKS1_ARATH (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 9.9e-42
Identity = 78/86 (90.70%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIL 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of Csa1G132710 vs. Swiss-Prot
Match: CKS1_ORYSI (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica GN=CKS1 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-39
Identity = 76/81 (93.83%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of Csa1G132710 vs. Swiss-Prot
Match: CKS1_ORYSJ (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN=CKS1 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-39
Identity = 76/81 (93.83%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of Csa1G132710 vs. Swiss-Prot
Match: CKS2_ARATH (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.3e-37
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVL PEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of Csa1G132710 vs. Swiss-Prot
Match: CKS1_PHYPO (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.0e-27
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 4  IQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+L P+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]

BLAST of Csa1G132710 vs. TrEMBL
Match: A0A0A0LY04_CUCSA (Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus GN=Csa_1G132710 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Csa1G132710 vs. TrEMBL
Match: B9SCL8_RICCO (Cyclin-dependent kinases regulatory subunit OS=Ricinus communis GN=RCOM_0475440 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.0e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKY+DD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYYDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNILAK 88

[Close]

BLAST of Csa1G132710 vs. TrEMBL
Match: A0A0D2UD86_GOSRA (Cyclin-dependent kinases regulatory subunit OS=Gossypium raimondii GN=B456_009G089700 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.0e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQSMLAK 88

[Close]

BLAST of Csa1G132710 vs. TrEMBL
Match: A0A061GWB0_THECC (Cyclin-dependent kinases regulatory subunit OS=Theobroma cacao GN=TCM_041571 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.3e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQAMLAK 88

[Close]

BLAST of Csa1G132710 vs. TrEMBL
Match: A0A0B0ML77_GOSAR (Cyclin-dependent kinases regulatory subunit OS=Gossypium arboreum GN=F383_01496 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.0e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ +L+K
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQSMLSK 88

[Close]

BLAST of Csa1G132710 vs. TAIR10
Match: AT2G27960.1 (AT2G27960.1 cyclin-dependent kinase-subunit 1)

HSP 1 Score: 170.2 bits (430), Expect = 5.6e-43
Identity = 78/86 (90.70%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIL 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of Csa1G132710 vs. TAIR10
Match: AT2G27970.1 (AT2G27970.1 CDK-subunit 2)

HSP 1 Score: 154.8 bits (390), Expect = 2.4e-38
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVL PEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of Csa1G132710 vs. NCBI nr
Match: gi|659071885|ref|XP_008462400.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 3.6e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of Csa1G132710 vs. NCBI nr
Match: gi|720036280|ref|XP_010267302.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera])

HSP 1 Score: 180.3 bits (456), Expect = 1.5e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQ+LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQMLAK 88

[Close]

BLAST of Csa1G132710 vs. NCBI nr
Match: gi|255565493|ref|XP_002523737.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Ricinus communis])

HSP 1 Score: 178.3 bits (451), Expect = 5.8e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKY+DD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYYDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNILAK 88

[Close]

BLAST of Csa1G132710 vs. NCBI nr
Match: gi|823223912|ref|XP_012444712.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium raimondii])

HSP 1 Score: 178.3 bits (451), Expect = 5.8e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQSMLAK 88

[Close]

BLAST of Csa1G132710 vs. NCBI nr
Match: gi|590587770|ref|XP_007016049.1| (Cyclin-dependent kinases regulatory subunit 1 [Theobroma cacao])

HSP 1 Score: 177.9 bits (450), Expect = 7.6e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQAMLAK 88

The following BLAST results are available for this feature:

BLAST of Csa1G132710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CKS1_ARATH	9.9e-42	90.70	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE...	[more]
CKS1_ORYSI	2.7e-39	93.83	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica GN=C...	[more]
CKS1_ORYSJ	2.7e-39	93.83	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN...	[more]
CKS2_ARATH	4.3e-37	87.50	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE...	[more]
CKS1_PHYPO	4.0e-27	78.79	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum PE...	[more]

BLAST of Csa1G132710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY04_CUCSA	2.5e-44	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus GN=Csa_1G132710 P...	[more]
B9SCL8_RICCO	4.0e-42	95.45	Cyclin-dependent kinases regulatory subunit OS=Ricinus communis GN=RCOM_0475440 ...	[more]
A0A0D2UD86_GOSRA	4.0e-42	95.45	Cyclin-dependent kinases regulatory subunit OS=Gossypium raimondii GN=B456_009G0...	[more]
A0A061GWB0_THECC	5.3e-42	95.45	Cyclin-dependent kinases regulatory subunit OS=Theobroma cacao GN=TCM_041571 PE=...	[more]
A0A0B0ML77_GOSAR	9.0e-42	94.32	Cyclin-dependent kinases regulatory subunit OS=Gossypium arboreum GN=F383_01496 ...	[more]

BLAST of Csa1G132710 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27960.1	5.6e-43	90.70	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	2.4e-38	87.50	CDK-subunit 2	[more]

BLAST of Csa1G132710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071885\|ref\|XP_008462400.1\|	3.6e-44	100.00	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis melo]	[more]
gi\|720036280\|ref\|XP_010267302.1\|	1.5e-42	96.59	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera]	[more]
gi\|255565493\|ref\|XP_002523737.1\|	5.8e-42	95.45	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Ricinus communis]	[more]
gi\|823223912\|ref\|XP_012444712.1\|	5.8e-42	95.45	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium raimondii]	[more]
gi\|590587770\|ref\|XP_007016049.1\|	7.6e-42	95.45	Cyclin-dependent kinases regulatory subunit 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000789	Cyclin-dep_kinase_reg-sub

Vocabulary: **Biological Process**
Term	Definition
GO:0007049	cell cycle

Vocabulary: **Molecular Function**
Term	Definition
GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0010440	stomatal lineage progression
biological_process	GO:0007049	cell cycle
biological_process	GO:0045859	regulation of protein kinase activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity
molecular_function	GO:0016301	kinase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU092272	cucumber EST collection version 3.0	transcribed_cluster
CU092693	cucumber EST collection version 3.0	transcribed_cluster
CU105305	cucumber EST collection version 3.0	transcribed_cluster
CU137649	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G132710.1	Csa1G132710.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105305	CU105305	transcribed_cluster
CU092272	CU092272	transcribed_cluster
CU137649	CU137649	transcribed_cluster
CU092693	CU092693	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 40..54 score: 1.0E-25coord: 18..32 score: 1.0E-25coord: 3..17 score: 1.0E-25coord: 55..69 score: 1.0
IPR000789	Cyclin-dependent kinase, regulatory subunit	GENE3D	G3DSA:3.30.170.10		coord: 1..76 score: 5.5
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 score: 5.6
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 score: 1.4
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24 scor
IPR000789	Cyclin-dependent kinase, regulatory subunit	unknown	SSF55637	Cell cycle regulatory proteins	coord: 1..83 score: 7.85
None	No IPR available	unknown	Coil	Coil	coord: 72..88 scor
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..84 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G132710	Cla008693	Watermelon (97103) v1	cuwmB065
Csa1G132710	MELO3C004864	Melon (DHL92) v3.5.1	cumeB015
Csa1G132710	ClCG02G021690	Watermelon (Charleston Gray)	cuwcgB028
Csa1G132710	Lsi10G012170	Bottle gourd (USVL1VR-Ls)	culsiB005
Csa1G132710	MELO3C004864.2	Melon (DHL92) v3.6.1	cumedB010
Csa1G132710	Cla97C02G047720	Watermelon (97103) v2	cuwmbB026
Csa1G132710	CSPI01G13980	Wild cucumber (PI 183967)	cpicuB000
Csa1G132710	Cucsa.200360	Cucumber (Gy14) v1	cgycuB305
Csa1G132710	CmaCh02G013730	Cucurbita maxima (Rimu)	cmacuB579
Csa1G132710	Cp4.1LG20g07420	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G132710	CsGy1G013980	Cucumber (Gy14) v2	cgybcuB001
Csa1G132710	Carg23701	Silver-seed gourd	carcuB0185

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G132710	Watermelon (97103) v2	cuwmbB002
Csa1G132710	Wax gourd	cuwgoB049
Csa1G132710	Cucurbita maxima (Rimu)	cmacuB163
Csa1G132710	Cucurbita maxima (Rimu)	cmacuB203
Csa1G132710	Cucurbita moschata (Rifu)	cmocuB148
Csa1G132710	Cucurbita moschata (Rifu)	cmocuB188
Csa1G132710	Watermelon (Charleston Gray)	cuwcgB014
Csa1G132710	Cucurbita pepo (Zucchini)	cpecuB805
Csa1G132710	Bottle gourd (USVL1VR-Ls)	culsiB044