CU137649 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU137649
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCyclin-dependent kinases regulatory subunit
LocationChr1 : 9457583 .. 9457769 (-)
Sequence length199
The following sequences are available for this feature:

transcribed_cluster sequence

ATTGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCATGAGAATCAAAGCACAACAGCAGATTTTGGCCAAGTAAATTGGTTTATTGTCCTTTTTTTTCTTAGACACACTATAATGAGAAATATCTCACTACAAAACATAAAAAATTAGTGTTGTGT
Library categoryESTs
gynoecious flower library1
BLAST of CU137649 vs. Swiss-Prot
Match: CKS1_ARATH (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.6e-11
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 3

Query: 3  WVHYAIHRPEPHIMLFRRPLNYQQQHENQS 62
          WVHYA+HRPEPHIMLFRRPLNYQQQ ENQ+
Sbjct: 52 WVHYAVHRPEPHIMLFRRPLNYQQQQENQA 81

Query: 63 93
          
Sbjct: 112 81

BLAST of CU137649 vs. Swiss-Prot
Match: CKS2_ARATH (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-10
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 3

Query: 3  WVHYAIHRPEPHIMLFRRPLNYQQQHENQ 62
          WVHYAIHRPEPHIMLFRRPLNYQQ+H+ Q
Sbjct: 52 WVHYAIHRPEPHIMLFRRPLNYQQEHQAQ 80

Query: 63 90
          
Sbjct: 112 80

BLAST of CU137649 vs. Swiss-Prot
Match: CKS1_ORYSI (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica GN=CKS1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-09
Identity = 26/33 (78.79%), Postives = 26/33 (78.79%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTA 62
           WVHYAIHRPEPHIMLFRRPLN+QQQ E  +  A
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNFQQQQEAAAAAA 84

Query: 63  102
           
Sbjct: 112 84

BLAST of CU137649 vs. Swiss-Prot
Match: CKS1_ORYSJ (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN=CKS1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-09
Identity = 26/33 (78.79%), Postives = 26/33 (78.79%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTA 62
           WVHYAIHRPEPHIMLFRRPLN+QQQ E  +  A
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNFQQQQEAAAAAA 84

Query: 63  102
           
Sbjct: 112 84

BLAST of CU137649 vs. TrEMBL
Match: M0S762_MUSAM (Cyclin-dependent kinases regulatory subunit OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-09
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTA 62
           WVHYAIHRPEPHIMLFRRPLNYQQQ ENQ+  A
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNYQQQQENQAAAA 84

Query: 63  102
           
Sbjct: 112 84

BLAST of CU137649 vs. TrEMBL
Match: M0S766_MUSAM (Cyclin-dependent kinases regulatory subunit OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-09
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTA 62
           WVHYAIHRPEPHIMLFRRPLNYQQQ ENQ+  A
Sbjct: 92  WVHYAIHRPEPHIMLFRRPLNYQQQQENQAAAA 124

Query: 63  102
           
Sbjct: 152 124

BLAST of CU137649 vs. TrEMBL
Match: A0A0B0PI45_GOSAR (Cyclin-dependent kinases regulatory subunit OS=Gossypium arboreum GN=F383_29921 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-09
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTA 62
           WVHYAIHRPEPHIMLFRRPLNYQQQ ENQ+  A
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQA 84

Query: 63  102
           
Sbjct: 112 84

BLAST of CU137649 vs. TrEMBL
Match: A0A061GWB0_THECC (Cyclin-dependent kinases regulatory subunit OS=Theobroma cacao GN=TCM_041571 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-09
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTA 62
           WVHYAIHRPEPHIMLFRRPLNYQQQ ENQ+  A
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQA 84

Query: 63  102
           
Sbjct: 112 84

BLAST of CU137649 vs. TrEMBL
Match: A0A0D2PXL2_GOSRA (Cyclin-dependent kinases regulatory subunit OS=Gossypium raimondii GN=B456_001G117400 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-09
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTA 62
           WVHYAIHRPEPHIMLFRRPLNYQQQ ENQ+  A
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQA 84

Query: 63  102
           
Sbjct: 112 84

BLAST of CU137649 vs. NCBI nr
Match: gi|743875912|ref|XP_010907452.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis])

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-10
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTADFGQV 62
           WVHYAIHRPEPHIMLFRRPLNYQQQ ENQ+ TA   Q+
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNYQQQQENQAATAAAAQM 89

Query: 63  117
           
Sbjct: 112 89

BLAST of CU137649 vs. NCBI nr
Match: gi|672140867|ref|XP_008794250.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Phoenix dactylifera])

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-09
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTADFGQV 62
           WVHYAIHRPEPHIMLFRRPLNYQQQ ENQ+  A   Q+
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNYQQQQENQAAAAAAAQM 89

Query: 63  117
           
Sbjct: 112 89

BLAST of CU137649 vs. NCBI nr
Match: gi|695005373|ref|XP_009389135.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-09
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTA 62
           WVHYAIHRPEPHIMLFRRPLNYQQQ ENQ+  A
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNYQQQQENQAAAA 84

Query: 63  102
           
Sbjct: 112 84

BLAST of CU137649 vs. NCBI nr
Match: gi|695005362|ref|XP_009389130.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-09
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTA 62
           WVHYAIHRPEPHIMLFRRPLNYQQQ ENQ+  A
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNYQQQQENQAAAA 84

Query: 63  102
           
Sbjct: 112 84

BLAST of CU137649 vs. NCBI nr
Match: gi|470116787|ref|XP_004294559.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-09
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 3

Query: 3   WVHYAIHRPEPHIMLFRRPLNYQQQHENQSTTA 62
           WVHYAIHRPEPHIMLFRRPLNYQQQ ENQ+  A
Sbjct: 52  WVHYAIHRPEPHIMLFRRPLNYQQQQENQAVLA 84

Query: 63  102
           
Sbjct: 112 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CKS1_ARATH8.6e-1190.00Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE... [more]
CKS2_ARATH4.3e-1089.66Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE... [more]
CKS1_ORYSI2.8e-0978.79Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica GN=C... [more]
CKS1_ORYSJ2.8e-0978.79Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN... [more]
Match NameE-valueIdentityDescription
M0S762_MUSAM2.5e-0987.88Cyclin-dependent kinases regulatory subunit OS=Musa acuminata subsp. malaccensis... [more]
M0S766_MUSAM2.5e-0987.88Cyclin-dependent kinases regulatory subunit OS=Musa acuminata subsp. malaccensis... [more]
A0A0B0PI45_GOSAR4.3e-0987.88Cyclin-dependent kinases regulatory subunit OS=Gossypium arboreum GN=F383_29921 ... [more]
A0A061GWB0_THECC4.3e-0987.88Cyclin-dependent kinases regulatory subunit OS=Theobroma cacao GN=TCM_041571 PE=... [more]
A0A0D2PXL2_GOSRA4.3e-0987.88Cyclin-dependent kinases regulatory subunit OS=Gossypium raimondii GN=B456_001G1... [more]
Match NameE-valueIdentityDescription
gi|743875912|ref|XP_010907452.1|5.6e-1081.58PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis][more]
gi|672140867|ref|XP_008794250.1|2.1e-0978.95PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Phoenix dactylifera][more]
gi|695005373|ref|XP_009389135.1|4.7e-0987.88PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Musa acuminata su... [more]
gi|695005362|ref|XP_009389130.1|4.7e-0987.88PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Musa acuminata subsp. ... [more]
gi|470116787|ref|XP_004294559.1|6.2e-0987.88PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Fragaria vesca subsp. ... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G132710Csa1G132710gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0040567G0040567EST