CSPI01G13980 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CACAAATTAAATCATTATTAAATTACTAAAAAATAATAAACAACCTTTCTATAAATTTACATTTTTAACCCCTCAACTTTCTATATTCTTCTCCCTTTCCCAAAATTCAACCCACTATTTCAACTTCATCGTCTCACTTTCCCCTTCTTCTTCTTCTTCTTCATCGCTCCTCCAATTTCTGGAATCCATTTCTCCAATTCCTTTCCATTTTCTTCAGATCAAAACAAGCCCGACCGACTTTTTTCTCTCTTGTTCGGTGCGATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGTCTGAGATTTCTCTTCGATGGTTTTTTTCATCGACATGGTTTGATTCTCATGGGGTTTGTTTTTTTTTTTTTTGTTTTCTTTTTTGTTGATGTTTGTTGTAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAGTAAGTATTTCATGATTCTTCTCTATAATCATTATTTCTTGGGTCGAATCCTGTTTTGATAGTCGGAGACGAACTAAATTGGAAGTGGAAGAGATTTCTCTCATAATCATCGGCTGCTTTCAATGTGATAGTGCGATATAATCTGAATACATTTGAGATCTGTGTAGTTTGATTATGCAATAGATTGATTGCGTGATGATTAATCTGAATACATTTGAGATCCGTGTTGTTGGATTATGCAATAGATTGATTGCGTGATGATTAATCTGAAGTAAATATATCATAATTTCTTGTGTGAAATCCTGTTCCGCTAATTGAAAAGAAAATGAACTAAAAAATTGAAAGAGATCTCTCTCATAATCTGAATACCTTTAAGATGAAGTAATGGAATTTGATGTTGATGATGAACAGAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAAATTGGTTTATTGTCCTTTTTTTCCCTTTAGACACACTATAATGAGAAATATCTCACTACAAAACAAAAAAAAAATTAAGTGTTTGTGGTTTGTTGTGTGGTGTAGTTTCCTTCTCCAATTTGGAGAAGCTTTGTGGCCCAGTTAGATCTTTGTCATAGTCATTAATCAATTCCCCATCATTGTTCATGAATTTGTGGTTTTAATTTGCTTTTGATATAAGCGTGGTTCTTATCTTCTCTTCTTCTTGGCTGCCATCTCTTCTACATATTACTTCTAAATTTATTTTATTTTTTCTCTCTCTTTTTTGTGTTCTTTG ATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAA ATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAA
BLAST of CSPI01G13980 vs. Swiss-Prot
Match: CKS1_ARATH (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE=1 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 2.9e-41 Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 1
BLAST of CSPI01G13980 vs. Swiss-Prot
Match: CKS1_ORYSI (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica GN=CKS1 PE=2 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 3.5e-39 Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1
BLAST of CSPI01G13980 vs. Swiss-Prot
Match: CKS1_ORYSJ (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN=CKS1 PE=2 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 3.5e-39 Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1
BLAST of CSPI01G13980 vs. Swiss-Prot
Match: CKS2_ARATH (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE=3 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 7.3e-37 Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 1
BLAST of CSPI01G13980 vs. Swiss-Prot
Match: CKS1_PHYPO (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum PE=1 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 3.1e-27 Identity = 52/66 (78.79%), Postives = 61/66 (92.42%), Query Frame = 1
BLAST of CSPI01G13980 vs. TrEMBL
Match: A0A0A0LY04_CUCSA (Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus GN=Csa_1G132710 PE=3 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 7.4e-44 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
BLAST of CSPI01G13980 vs. TrEMBL
Match: A0A0D2UD86_GOSRA (Cyclin-dependent kinases regulatory subunit OS=Gossypium raimondii GN=B456_009G089700 PE=3 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 1.2e-41 Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of CSPI01G13980 vs. TrEMBL
Match: B9SCL8_RICCO (Cyclin-dependent kinases regulatory subunit OS=Ricinus communis GN=RCOM_0475440 PE=3 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 1.2e-41 Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of CSPI01G13980 vs. TrEMBL
Match: A0A061GWB0_THECC (Cyclin-dependent kinases regulatory subunit OS=Theobroma cacao GN=TCM_041571 PE=3 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 1.5e-41 Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of CSPI01G13980 vs. TrEMBL
Match: A0A059AAM5_EUCGR (Cyclin-dependent kinases regulatory subunit (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_J00392 PE=3 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 2.6e-41 Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of CSPI01G13980 vs. TAIR10
Match: AT2G27960.1 (AT2G27960.1 cyclin-dependent kinase-subunit 1) HSP 1 Score: 168.7 bits (426), Expect = 1.6e-42 Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 1
BLAST of CSPI01G13980 vs. TAIR10
Match: AT2G27970.1 (AT2G27970.1 CDK-subunit 2) HSP 1 Score: 154.1 bits (388), Expect = 4.1e-38 Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 1
BLAST of CSPI01G13980 vs. NCBI nr
Match: gi|659071885|ref|XP_008462400.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis melo]) HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
BLAST of CSPI01G13980 vs. NCBI nr
Match: gi|720036280|ref|XP_010267302.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera]) HSP 1 Score: 178.7 bits (452), Expect = 4.4e-42 Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1
BLAST of CSPI01G13980 vs. NCBI nr
Match: gi|255565493|ref|XP_002523737.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Ricinus communis]) HSP 1 Score: 176.8 bits (447), Expect = 1.7e-41 Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of CSPI01G13980 vs. NCBI nr
Match: gi|823223912|ref|XP_012444712.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium raimondii]) HSP 1 Score: 176.8 bits (447), Expect = 1.7e-41 Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of CSPI01G13980 vs. NCBI nr
Match: gi|590587770|ref|XP_007016049.1| (Cyclin-dependent kinases regulatory subunit 1 [Theobroma cacao]) HSP 1 Score: 176.4 bits (446), Expect = 2.2e-41 Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|