CsGy1G013980 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G013980
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Cyclin-dependent kinases regulatory subunit
Location	Chr1 : 9597255 .. 9598875 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCTTCTTCTTCTTCTTCTTCATCGCTCCTCCAATTTCTGGAATCCATTTCTCCAATTCTTTTCCATTTTCTTCAGATCAAAACAAGCCCGACCGACTTTTTTCTCTCTTGTTCGGTGCGATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGTCTGAGATTTCTCTTCGATGGTTTTTTTCATCGACATGGTTTGATTCTCATGGGGTTTGTTTTTGTTTTTTTTTTCTTTTTTGTTGATGTTTGTTGTAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAGTAAGTATTTCATGATTCTTCTCTATAATCATTATTTCTTGGGTCGAATCCTGTTTTGATAGTCGGAAACGAACTAAATTGGAAGTGGAAGAGATTTCTCTCATAATCATCGGCTGCTTTCAATGTGATTGTGCGATATAATCTGAATACATTTGAGATCTGTGTAGTTTGATTATGCAATAGATTGATTGCGTGATGATTAATCTGAATACATTTGAGATCTTTGTAGTTGGATTATGCAATAGATTGATTGCGTGATGATTAATCTGAAGTAAATATACCATAATTTCTTGTGTGAAATCCTGTTACGCTAATTGAAAAGAAAATGAACTAAAAATTGAAAGAGATCTCTCTCATAATCTGAATACCTTTAAGATGAAGTGATGGAATTTGATGTTGATGATGAACAGAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAAATTGGTTTATTGTCCTTTTTTTTCCTTTAGACACACTATAATGAGAAATATCTCACTACAAAACATAAAAAAATTAAGTGTTTGTGGTTTGTTGTGTGGTGTAGTTTCCTTCTCCAATTTGGAGAAGCTTTGTGGCCCAGTTAGATCTTTGTCATAGTCATTAATCAATTCCCCACCATTGTTCATGAATTTGTGGTTTTAATTTGCTTTTGATATAAGCGTGGTTCTTATCTTCTCTTCTTCTTGGCTGCCATCTCTTCTACATATTACTTCTAAATTTATTTTATTTTTTCTCTCTCTTTTTTGTGTTCTTTGTTAAAGCAAGCACTGAGGTCGAAAATATTGATAAAATGCGAAATCTTTTTTAATTTAAATTAGAAATCAAACATTTTAAACAAATCAACATGTATATGATTTATATCAGTGACATTCTTAGTGTTTATAACTTGGAAACACATTTTATCATGTTTTTTTTCCCCCAAAGTTTGAGACCTCTTGGAAGAAATAGTATGTATTGAAATTAATTTAATGAAATGGTCTTCTTAAGTTTATTAGAGTTATTTTTTAAAACCCACCCACCCCTCGAGGATCATGGTGTTATTGTAATGTTTTATTGTAAGTTTTAAAATCAATTTACATTCTTGAATATTCAAAATATTCGATTTTGATCCACACCTTATTTAAAGTTTTACTTTAGAAATACAATAAAACCATTATATAAT

mRNA sequence

TCTTCTTCTTCTTCTTCTTCTTCATCGCTCCTCCAATTTCTGGAATCCATTTCTCCAATTCTTTTCCATTTTCTTCAGATCAAAACAAGCCCGACCGACTTTTTTCTCTCTTGTTCGGTGCGATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAAATTGGTTTATTGTCCTTTTTTTTCCTTTAGACACACTATAATGAGAAATATCTCACTACAAAACATAAAAAAATTAAGTGTTTGTGGTTTGTTGTGTGGTGTAGTTTCCTTCTCCAATTTGGAGAAGCTTTGTGGCCCAGTTAGATCTTTGTCATAGTCATTAATCAATTCCCCACCATTGTTCATGAATTTGTGGTTTTAATTTGCTTTTGATATAAGCGTGGTTCTTATCTTCTCTTCTTCTTGGCTGCCATCTCTTCTACATATTACTTCTAAATTTATTTTATTTTTTCTCTCTCTTTTTTGTGTTCTTTGTTAAAGCAAGCACTGAGGTCGAAAATATTGATAAAATGCGAAATCTTTTTTAATTTAAATTAGAAATCAAACATTTTAAACAAATCAACATGTATATGATTTATATCAGTGACATTCTTAGTGTTTATAACTTGGAAACACATTTTATCATGTTTTTTTTCCCCCAAAGTTTGAGACCTCTTGGAAGAAATAGTATGTATTGAAATTAATTTAATGAAATGGTCTTCTTAAGTTTATTAGAGTTATTTTTTAAAACCCACCCACCCCTCGAGGATCATGGTGTTATTGTAATGTTTTATTGTAAGTTTTAAAATCAATTTACATTCTTGAATATTCAAAATATTCGATTTTGATCCACACCTTATTTAAAGTTTTACTTTAGAAATACAATAAAACCATTATATAAT

Coding sequence (CDS)

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAA

Protein sequence

MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQILAK

Homology

[Close]

BLAST of CsGy1G013980 vs. NCBI nr
Match: XP_011654109.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_016903015.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X2 [Cucumis melo] >KGN64861.1 hypothetical protein Csa_1G132710 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 3.5e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. NCBI nr
Match: XP_022964884.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_022964885.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_022970358.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima] >XP_022970359.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima] >XP_023519916.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo] >XP_023519917.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.2 bits (461), Expect = 7.7e-43
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. NCBI nr
Match: XP_016903011.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILA 88
          EPHIMLFRRPLNYQQQQENQAQQQILA
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILA 87

[Close]

BLAST of CsGy1G013980 vs. NCBI nr
Match: GAV69670.1 (CKS domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNMLAK 88

[Close]

BLAST of CsGy1G013980 vs. NCBI nr
Match: XP_010267303.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera] >XP_010267305.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera] >XP_010267306.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera])

HSP 1 Score: 177.9 bits (450), Expect = 1.5e-41
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQ+LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQMLAK 88

[Close]

BLAST of CsGy1G013980 vs. TAIR10
Match: AT2G27960.1 (cyclin-dependent kinase-subunit 1)

HSP 1 Score: 167.9 bits (424), Expect = 2.7e-42
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIL 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of CsGy1G013980 vs. TAIR10
Match: AT2G27970.1 (CDK-subunit 2)

HSP 1 Score: 153.7 bits (387), Expect = 5.3e-38
Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVL PEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of CsGy1G013980 vs. Swiss-Prot
Match: sp|O23249|CKS1_ARATH (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.9e-41
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIL 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of CsGy1G013980 vs. Swiss-Prot
Match: sp|A2XCH8|CKS1_ORYSI (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.6e-37
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQ 75
          EPHIMLFRRPLN+Q
Sbjct: 61 EPHIMLFRRPLNFQ 74

[Close]

BLAST of CsGy1G013980 vs. Swiss-Prot
Match: sp|Q6PS57|CKS1_ORYSJ (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.6e-37
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQ 75
          EPHIMLFRRPLN+Q
Sbjct: 61 EPHIMLFRRPLNFQ 74

[Close]

BLAST of CsGy1G013980 vs. Swiss-Prot
Match: sp|Q9SJJ5|CKS2_ARATH (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.6e-37
Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVL PEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of CsGy1G013980 vs. Swiss-Prot
Match: sp|P55933|CKS1_PHYPO (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-27
Identity = 52/66 (78.79%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 4  IQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+L P+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]

BLAST of CsGy1G013980 vs. TrEMBL
Match: tr|A0A1S4E4W6|A0A1S4E4W6_CUCME (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500769 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. TrEMBL
Match: tr|A0A0A0LY04|A0A0A0LY04_CUCSA (Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G132710 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. TrEMBL
Match: tr|A0A1S4E453|A0A1S4E453_CUCME (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500769 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 8.7e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILA 88
          EPHIMLFRRPLNYQQQQENQAQQQILA
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILA 87

[Close]

BLAST of CsGy1G013980 vs. TrEMBL
Match: tr|A0A1Q3BNS5|A0A1Q3BNS5_CEPFO (Cyclin-dependent kinases regulatory subunit OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_13171 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.4e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNMLAK 88

[Close]

BLAST of CsGy1G013980 vs. TrEMBL
Match: tr|A0A1U8AJ97|A0A1U8AJ97_NELNU (Cyclin-dependent kinases regulatory subunit OS=Nelumbo nucifera OX=4432 GN=LOC104604585 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 9.6e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQ+LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQMLAK 88

The following BLAST results are available for this feature:

BLAST of CsGy1G013980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654109.1	3.5e-43	100.00	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_0...	[more]
XP_022964884.1	7.7e-43	98.86	cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_0229...	[more]
XP_016903011.1	1.3e-42	100.00	PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X1 [Cucumis mel...	[more]
GAV69670.1	1.1e-41	96.59	CKS domain-containing protein [Cephalotus follicularis]	[more]
XP_010267303.1	1.5e-41	96.59	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera] >XP_...	[more]

BLAST of CsGy1G013980 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27960.1	2.7e-42	90.70	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	5.3e-38	87.50	CDK-subunit 2	[more]

BLAST of CsGy1G013980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O23249\|CKS1_ARATH	4.9e-41	90.70	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|A2XCH8\|CKS1_ORYSI	5.6e-37	95.95	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3...	[more]
sp\|Q6PS57\|CKS1_ORYSJ	5.6e-37	95.95	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q9SJJ5\|CKS2_ARATH	9.6e-37	87.50	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|P55933\|CKS1_PHYPO	3.1e-27	78.79	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX...	[more]

BLAST of CsGy1G013980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E4W6\|A0A1S4E4W6_CUCME	2.3e-43	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
tr\|A0A0A0LY04\|A0A0A0LY04_CUCSA	2.3e-43	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
tr\|A0A1S4E453\|A0A1S4E453_CUCME	8.7e-43	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
tr\|A0A1Q3BNS5\|A0A1Q3BNS5_CEPFO	7.4e-42	96.59	Cyclin-dependent kinases regulatory subunit OS=Cephalotus follicularis OX=3775 G...	[more]
tr\|A0A1U8AJ97\|A0A1U8AJ97_NELNU	9.6e-42	96.59	Cyclin-dependent kinases regulatory subunit OS=Nelumbo nucifera OX=4432 GN=LOC10...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007049	cell cycle

Vocabulary: **INTERPRO**
Term	Definition
IPR036858	Cyclin-dep_kinase_reg-sub_sf
IPR000789	Cyclin-dep_kinase_reg-sub

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division
biological_process	GO:0045859	regulation of protein kinase activity
biological_process	GO:0051726	regulation of cell cycle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G013980.1	CsGy1G013980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 40..54 score: 75.9 coord: 18..32 score: 56.41 coord: 3..17 score: 64.1 coord: 55..69 score: 76.41
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 e-value: 1.4E-45 score: 167.4
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 e-value: 5.8E-35 score: 119.3
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	GENE3D	G3DSA:3.30.170.10		coord: 1..84 e-value: 3.0E-39 score: 135.2
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	SUPERFAMILY	SSF55637	Cell cycle regulatory proteins	coord: 1..83
None	No IPR available	PANTHER	PTHR23415:SF29	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	coord: 1..82
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G013980	Cla008693	Watermelon (97103) v1	cgybwmB067
CsGy1G013980	Cla001856	Watermelon (97103) v1	cgybwmB054
CsGy1G013980	Csa1G132710	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G013980	MELO3C004864	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G013980	ClCG02G021690	Watermelon (Charleston Gray)	cgybwcgB027
CsGy1G013980	CSPI01G13980	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G013980	CmaCh13G002630	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G013980	CmaCh02G013730	Cucurbita maxima (Rimu)	cgybcmaB123
CsGy1G013980	CmoCh02G014070	Cucurbita moschata (Rifu)	cgybcmoB113
CsGy1G013980	CmoCh13G002700	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G013980	Cp4.1LG20g07420	Cucurbita pepo (Zucchini)	cgybcpeB082
CsGy1G013980	MELO3C004864.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G013980	CsaV3_1G014150	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G013980	Cla97C02G047720	Watermelon (97103) v2	cgybwmbB026
CsGy1G013980	Cla97C01G012860	Watermelon (97103) v2	cgybwmbB003
CsGy1G013980	Carg23701	Silver-seed gourd	carcgybB0180

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G013980	Cucurbita maxima (Rimu)	cgybcmaB058
CsGy1G013980	Cucurbita moschata (Rifu)	cgybcmoB054
CsGy1G013980	Cucurbita pepo (Zucchini)	cgybcpeB142
CsGy1G013980	Bottle gourd (USVL1VR-Ls)	cgyblsiB041
CsGy1G013980	Watermelon (Charleston Gray)	cgybwcgB014
CsGy1G013980	Wax gourd	cgybwgoB046