Cla97C01G012860 (gene) Watermelon (97103) v2

Overview
NameCla97C01G012860
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionCyclin-dependent kinases regulatory subunit
LocationCla97Chr01 : 26423107 .. 26423651 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCAGATCCAATACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGTCAGTAATTTCTCTTCCTCCTCTGTTTTTCGATTCAGGATGATTTTATGCTCTGGATTTGTTCATCGGCATGGTTTGATTCTCATGTTTGTTGTAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAGTAAGTATTTCACGATTCTCCTCTATATCATAATTTCTTGTGTTGAATCCTGTTCCGGTGATCAGTAGTGAAATGAAATAGATATCTCTCATAATCATCGGTTGCTTTTCCTCTGATTGATAAGTGTGATAGAATCTGAATACTTGAGATCTGTGTAATTTGATTATGTGATGATGGACAGAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGA

mRNA sequence

ATGGGTCAGATCCAATACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGA

Coding sequence (CDS)

ATGGGTCAGATCCAATACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGA

Protein sequence

MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQIMAK
Homology
[Close]
BLAST of Cla97C01G012860 vs. NCBI nr
Match: XP_011654109.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_016903015.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X2 [Cucumis melo] >KGN64861.1 hypothetical protein Csa_1G132710 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 3.8e-42
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]
BLAST of Cla97C01G012860 vs. NCBI nr
Match: XP_010267303.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera] >XP_010267305.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera] >XP_010267306.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera])

HSP 1 Score: 179.9 bits (455), Expect = 3.8e-42
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQMLAK 88

[Close]
BLAST of Cla97C01G012860 vs. NCBI nr
Match: XP_022964884.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_022964885.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_022970358.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima] >XP_022970359.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima] >XP_023519916.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo] >XP_023519917.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 8.5e-42
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]
BLAST of Cla97C01G012860 vs. NCBI nr
Match: XP_016903011.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMA 88
          EPHIMLFRRPLNYQQQQENQAQQQI+A
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILA 87

[Close]
BLAST of Cla97C01G012860 vs. NCBI nr
Match: XP_012444712.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium raimondii] >XP_012444713.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium raimondii] >XP_016750944.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium hirsutum] >XP_016750945.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium hirsutum] >XP_016689183.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium hirsutum] >KJB53545.1 hypothetical protein B456_009G089700 [Gossypium raimondii] >KJB53546.1 hypothetical protein B456_009G089700 [Gossypium raimondii] >KJB53547.1 hypothetical protein B456_009G089700 [Gossypium raimondii] >PPD77560.1 hypothetical protein GOBAR_DD25500 [Gossypium barbadense] >PPR86797.1 hypothetical protein GOBAR_AA33891 [Gossypium barbadense])

HSP 1 Score: 177.9 bits (450), Expect = 1.5e-41
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQSMLAK 88

[Close]
BLAST of Cla97C01G012860 vs. TrEMBL
Match: tr|A0A1U8AJ97|A0A1U8AJ97_NELNU (Cyclin-dependent kinases regulatory subunit OS=Nelumbo nucifera OX=4432 GN=LOC104604585 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-42
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQMLAK 88

[Close]
BLAST of Cla97C01G012860 vs. TrEMBL
Match: tr|A0A1S4E4W6|A0A1S4E4W6_CUCME (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500769 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-42
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]
BLAST of Cla97C01G012860 vs. TrEMBL
Match: tr|A0A0A0LY04|A0A0A0LY04_CUCSA (Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G132710 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-42
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]
BLAST of Cla97C01G012860 vs. TrEMBL
Match: tr|A0A1S4E453|A0A1S4E453_CUCME (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500769 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.4e-42
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMA 88
          EPHIMLFRRPLNYQQQQENQAQQQI+A
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILA 87

[Close]
BLAST of Cla97C01G012860 vs. TrEMBL
Match: tr|A0A1U8PIF0|A0A1U8PIF0_GOSHI (Cyclin-dependent kinases regulatory subunit OS=Gossypium hirsutum OX=3635 GN=LOC107959398 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 9.6e-42
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQSMLAK 88

[Close]
BLAST of Cla97C01G012860 vs. Swiss-Prot
Match: sp|O23249|CKS1_ARATH (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.6e-42
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIM 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]
BLAST of Cla97C01G012860 vs. Swiss-Prot
Match: sp|A2XCH8|CKS1_ORYSI (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.1e-38
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQ 75
          EPHIMLFRRPLN+Q
Sbjct: 61 EPHIMLFRRPLNFQ 74

[Close]
BLAST of Cla97C01G012860 vs. Swiss-Prot
Match: sp|Q6PS57|CKS1_ORYSJ (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.1e-38
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQ 75
          EPHIMLFRRPLN+Q
Sbjct: 61 EPHIMLFRRPLNFQ 74

[Close]
BLAST of Cla97C01G012860 vs. Swiss-Prot
Match: sp|Q9SJJ5|CKS2_ARATH (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-37
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]
BLAST of Cla97C01G012860 vs. Swiss-Prot
Match: sp|P55933|CKS1_PHYPO (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.7e-28
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = 0 

Query: 4  IQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+LPP+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]
BLAST of Cla97C01G012860 vs. TAIR10
Match: AT2G27960.1 (cyclin-dependent kinase-subunit 1)

HSP 1 Score: 170.6 bits (431), Expect = 4.2e-43
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIM 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]
BLAST of Cla97C01G012860 vs. TAIR10
Match: AT2G27970.1 (CDK-subunit 2)

HSP 1 Score: 156.8 bits (395), Expect = 6.3e-39
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

The following BLAST results are available for this feature:
BLAST of Cla97C01G012860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654109.13.8e-4297.73PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_0... [more]
XP_010267303.13.8e-4296.59PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera] >XP_... [more]
XP_022964884.18.5e-4296.59cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_0229... [more]
XP_016903011.11.1e-4197.70PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X1 [Cucumis mel... [more]
XP_012444712.11.5e-4195.45PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium raimondii] >... [more]
BLAST of Cla97C01G012860 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1U8AJ97|A0A1U8AJ97_NELNU2.5e-4296.59Cyclin-dependent kinases regulatory subunit OS=Nelumbo nucifera OX=4432 GN=LOC10... [more]
tr|A0A1S4E4W6|A0A1S4E4W6_CUCME2.5e-4297.73Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500... [more]
tr|A0A0A0LY04|A0A0A0LY04_CUCSA2.5e-4297.73Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G... [more]
tr|A0A1S4E453|A0A1S4E453_CUCME7.4e-4297.70Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500... [more]
tr|A0A1U8PIF0|A0A1U8PIF0_GOSHI9.6e-4295.45Cyclin-dependent kinases regulatory subunit OS=Gossypium hirsutum OX=3635 GN=LOC... [more]
BLAST of Cla97C01G012860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O23249|CKS1_ARATH7.6e-4291.86Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|A2XCH8|CKS1_ORYSI5.1e-3897.30Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3... [more]
sp|Q6PS57|CKS1_ORYSJ5.1e-3897.30Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX... [more]
sp|Q9SJJ5|CKS2_ARATH1.1e-3788.75Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|P55933|CKS1_PHYPO3.7e-2880.30Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX... [more]
BLAST of Cla97C01G012860 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27960.14.2e-4391.86cyclin-dependent kinase-subunit 1[more]
AT2G27970.16.3e-3988.75CDK-subunit 2[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016538cyclin-dependent protein serine/threonine kinase regulator activity
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
Vocabulary: INTERPRO
TermDefinition
IPR036858Cyclin-dep_kinase_reg-sub_sf
IPR000789Cyclin-dep_kinase_reg-sub
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007049 cell cycle
biological_process GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process GO:0007346 regulation of mitotic cell cycle
biological_process GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process GO:0051301 cell division
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0010440 stomatal lineage progression
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0042023 DNA endoreduplication
biological_process GO:0045859 regulation of protein kinase activity
biological_process GO:0016310 phosphorylation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005575 cellular_component
cellular_component GO:0000307 cyclin-dependent protein kinase holoenzyme complex
cellular_component GO:0019005 SCF ubiquitin ligase complex
molecular_function GO:0016301 kinase activity
molecular_function GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity
molecular_function GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity
molecular_function GO:0042393 histone binding
molecular_function GO:0019901 protein kinase binding
molecular_function GO:0043130 ubiquitin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G012860.1Cla97C01G012860.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000789Cyclin-dependent kinase, regulatory subunitPRINTSPR00296CYCLINKINASEcoord: 40..54
score: 75.9
coord: 18..32
score: 62.05
coord: 3..17
score: 64.1
coord: 55..69
score: 76.41
IPR000789Cyclin-dependent kinase, regulatory subunitSMARTSM01084CKS_2coord: 3..72
e-value: 1.9E-46
score: 170.3
IPR000789Cyclin-dependent kinase, regulatory subunitPFAMPF01111CKScoord: 4..70
e-value: 1.7E-35
score: 121.0
IPR000789Cyclin-dependent kinase, regulatory subunitPROSITEPS00944CKS_1coord: 6..24
IPR036858Cyclin-dependent kinase, regulatory subunit superfamilyGENE3DG3DSA:3.30.170.10coord: 1..84
e-value: 4.8E-40
score: 137.8
IPR036858Cyclin-dependent kinase, regulatory subunit superfamilySUPERFAMILYSSF55637Cell cycle regulatory proteinscoord: 1..83
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..82
NoneNo IPR availablePANTHERPTHR23415:SF29CYCLIN-DEPENDENT KINASES REGULATORY SUBUNITcoord: 1..82

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G012860Cla001856Watermelon (97103) v1wmwmbB248
Cla97C01G012860MELO3C004864Melon (DHL92) v3.5.1mewmbB134
Cla97C01G012860ClCG01G013880Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G012860Cucsa.200360Cucumber (Gy14) v1cgywmbB374
Cla97C01G012860CmaCh13G002630Cucurbita maxima (Rimu)cmawmbB209
Cla97C01G012860CmoCh13G002700Cucurbita moschata (Rifu)cmowmbB193
Cla97C01G012860CsGy1G013980Cucumber (Gy14) v2cgybwmbB003
Cla97C01G012860MELO3C004864.2Melon (DHL92) v3.6.1medwmbB127
Cla97C01G012860Carg23701Silver-seed gourdcarwmbB0173
Cla97C01G012860CsaV3_1G014150Cucumber (Chinese Long) v3cucwmbB002
Cla97C01G012860Bhi08G000124Wax gourdwgowmbB461
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G012860Cucurbita maxima (Rimu)cmawmbB163
Cla97C01G012860Cucurbita moschata (Rifu)cmowmbB149
Cla97C01G012860Wild cucumber (PI 183967)cpiwmbB002
Cla97C01G012860Cucumber (Chinese Long) v2cuwmbB002
Cla97C01G012860Bottle gourd (USVL1VR-Ls)lsiwmbB216