ClCG01G013880 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G013880
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Cyclin-dependent kinases regulatory subunit, putative
Location	CG_Chr01 : 27830889 .. 27831825 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGCTCCTCCAAGGTCTTCGATTCTTCTTCTCCCAACTCTTTCTCTAAAGATTTCGCTTTCATTTTCGAATCCATTTCTCTAATCTTGTTCTATTTTTCTTCAGATCGAACAAGCCCTAGCCATTTTCTGTCTCTAATTCGTTGCGATGGGTCAGATCCAATACTCTGATAAATACTTTGATGATATCTATGAGTACAGGTCAGTAATTTCTCTTCCTCCTCTGTTTTTCGATTCAGGATGATTTTATGCTCTGGATTTGTTCATCGGCATGGTTTGATTCTCATGTTTGTTGTAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAGTAAGTATTTCACGATTCTCCTCTATATCATAATTTCTTGTGTTGAATCCTGTTCCGGTGATCAGTAGTGAAATGAAATAGATATCTCTCATAATCATCGGTTGCTTTTCCTCTGATTGATAAGTGTGATAGAATCTGAATACTTGAGATCTGTGTAATTTGATTATGTGATGATGGACAGAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGATAGGTTTATTACTCTTTTTCTTCTCTAGATATACTATATTTTGTTTAGAACACTAATGAGAAATATCTCACTACAAATCCAAAGAAAAAAAATCAGGTGTTTGTGGTTTGTTGTGTAGTTGTAGTTTCCTTCCCCAATTTGGAGAAGCTTTGTGGCCCAGTTAGATCTTTCATAGTCATAAGCCCCCACCATTGTTGAAGAATTTGTGGTTTTAAATTGCTTTGATATAAATATGGTTCTTATCC

mRNA sequence

ACCGCTCCTCCAAGATCGAACAAGCCCTAGCCATTTTCTGTCTCTAATTCGTTGCGATGGGTCAGATCCAATACTCTGATAAATACTTTGATGATATCTATGAGTACAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGATAGGTTTATTACTCTTTTTCTTCTCTAGATATACTATATTTTGTTTAGAACACTAATGAGAAATATCTCACTACAAATCCAAAGAAAAAAAATCAGGTGTTTGTGGTTTGTTGTGTAGTTGTAGTTTCCTTCCCCAATTTGGAGAAGCTTTGTGGCCCAGTTAGATCTTTCATAGTCATAAGCCCCCACCATTGTTGAAGAATTTGTGGTTTTAAATTGCTTTGATATAAATATGGTTCTTATCC

Coding sequence (CDS)

ATGGGTCAGATCCAATACTCTGATAAATACTTTGATGATATCTATGAGTACAGGCATGTAGTGCTTCCTCCTGAAGTCGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGCGAGCCATTGGTGTTCAGCAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCGCACATAATGCTGTTCAGAAGACCACTCAATTATCAACAGCAGCAAGAGAATCAAGCACAGCAGCAGATTATGGCCAAGTGA

Protein sequence

MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQIMAK

Homology

[Close]

BLAST of ClCG01G013880 vs. Swiss-Prot
Match: CKS1_ARATH (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.6e-42
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIM 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of ClCG01G013880 vs. Swiss-Prot
Match: CKS1_ORYSI (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica GN=CKS1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.0e-40
Identity = 76/81 (93.83%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of ClCG01G013880 vs. Swiss-Prot
Match: CKS1_ORYSJ (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN=CKS1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.0e-40
Identity = 76/81 (93.83%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of ClCG01G013880 vs. Swiss-Prot
Match: CKS2_ARATH (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-38
Identity = 72/80 (90.00%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSDKYFDD +EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of ClCG01G013880 vs. Swiss-Prot
Match: CKS1_PHYPO (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-27
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 4  IQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYS+KY+DD +EYRHV+LPP+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]

BLAST of ClCG01G013880 vs. TrEMBL
Match: A0A0A0LY04_CUCSA (Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus GN=Csa_1G132710 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.7e-43
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDDIYEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of ClCG01G013880 vs. TrEMBL
Match: A0A0D2UD86_GOSRA (Cyclin-dependent kinases regulatory subunit OS=Gossypium raimondii GN=B456_009G089700 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-42
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQSMLAK 88

[Close]

BLAST of ClCG01G013880 vs. TrEMBL
Match: B9SCL8_RICCO (Cyclin-dependent kinases regulatory subunit OS=Ricinus communis GN=RCOM_0475440 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-42
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KY+DD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYYDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQ I+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNILAK 88

[Close]

BLAST of ClCG01G013880 vs. TrEMBL
Match: A0A061GWB0_THECC (Cyclin-dependent kinases regulatory subunit OS=Theobroma cacao GN=TCM_041571 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.3e-42
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQAMLAK 88

[Close]

BLAST of ClCG01G013880 vs. TrEMBL
Match: A0A068UEM1_COFCA (Cyclin-dependent kinases regulatory subunit OS=Coffea canephora GN=GSCOC_T00024102001 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.3e-42
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQGVVAK 88

[Close]

BLAST of ClCG01G013880 vs. TAIR10
Match: AT2G27960.1 (AT2G27960.1 cyclin-dependent kinase-subunit 1)

HSP 1 Score: 172.2 bits (435), Expect = 1.5e-43
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIM 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of ClCG01G013880 vs. TAIR10
Match: AT2G27970.1 (AT2G27970.1 CDK-subunit 2)

HSP 1 Score: 159.5 bits (402), Expect = 9.7e-40
Identity = 72/80 (90.00%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSDKYFDD +EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of ClCG01G013880 vs. NCBI nr
Match: gi|659071885|ref|XP_008462400.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 6.8e-43
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDDIYEYRHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQI+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of ClCG01G013880 vs. NCBI nr
Match: gi|720036280|ref|XP_010267302.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera])

HSP 1 Score: 181.4 bits (459), Expect = 6.8e-43
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQQ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQMLAK 88

[Close]

BLAST of ClCG01G013880 vs. NCBI nr
Match: gi|747082917|ref|XP_011088804.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Sesamum indicum])

HSP 1 Score: 181.0 bits (458), Expect = 8.9e-43
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSDKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNMLAK 88

[Close]

BLAST of ClCG01G013880 vs. NCBI nr
Match: gi|255565493|ref|XP_002523737.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Ricinus communis])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KY+DD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYYDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQ I+AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNILAK 88

[Close]

BLAST of ClCG01G013880 vs. NCBI nr
Match: gi|823223912|ref|XP_012444712.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium raimondii])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGQIQYSDKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIMAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ++AK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQSMLAK 88

The following BLAST results are available for this feature:

BLAST of ClCG01G013880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CKS1_ARATH	2.6e-42	90.70	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE...	[more]
CKS1_ORYSI	7.0e-40	93.83	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica GN=C...	[more]
CKS1_ORYSJ	7.0e-40	93.83	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN...	[more]
CKS2_ARATH	1.7e-38	90.00	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE...	[more]
CKS1_PHYPO	1.1e-27	78.79	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum PE...	[more]

BLAST of ClCG01G013880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY04_CUCSA	4.7e-43	96.59	Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus GN=Csa_1G132710 P...	[more]
A0A0D2UD86_GOSRA	1.8e-42	94.32	Cyclin-dependent kinases regulatory subunit OS=Gossypium raimondii GN=B456_009G0...	[more]
B9SCL8_RICCO	1.8e-42	94.32	Cyclin-dependent kinases regulatory subunit OS=Ricinus communis GN=RCOM_0475440 ...	[more]
A0A061GWB0_THECC	2.3e-42	94.32	Cyclin-dependent kinases regulatory subunit OS=Theobroma cacao GN=TCM_041571 PE=...	[more]
A0A068UEM1_COFCA	2.3e-42	94.32	Cyclin-dependent kinases regulatory subunit OS=Coffea canephora GN=GSCOC_T000241...	[more]

BLAST of ClCG01G013880 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27960.1	1.5e-43	90.70	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	9.7e-40	90.00	CDK-subunit 2	[more]

BLAST of ClCG01G013880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071885\|ref\|XP_008462400.1\|	6.8e-43	96.59	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis melo]	[more]
gi\|720036280\|ref\|XP_010267302.1\|	6.8e-43	95.45	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera]	[more]
gi\|747082917\|ref\|XP_011088804.1\|	8.9e-43	95.45	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Sesamum indicum]	[more]
gi\|255565493\|ref\|XP_002523737.1\|	2.6e-42	94.32	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Ricinus communis]	[more]
gi\|823223912\|ref\|XP_012444712.1\|	2.6e-42	94.32	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000789	Cyclin-dep_kinase_reg-sub

Vocabulary: **Biological Process**
Term	Definition
GO:0007049	cell cycle

Vocabulary: **Molecular Function**
Term	Definition
GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0010440	stomatal lineage progression
biological_process	GO:0007049	cell cycle
biological_process	GO:0045859	regulation of protein kinase activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G013880.1	ClCG01G013880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 40..54 score: 3.3E-27coord: 18..32 score: 3.3E-27coord: 55..69 score: 3.3E-27coord: 3..17 score: 3.3
IPR000789	Cyclin-dependent kinase, regulatory subunit	GENE3D	G3DSA:3.30.170.10		coord: 1..76 score: 1.8
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 score: 9.3
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 score: 6.3
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24 scor
IPR000789	Cyclin-dependent kinase, regulatory subunit	unknown	SSF55637	Cell cycle regulatory proteins	coord: 1..83 score: 7.46
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..84 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G013880	MELO3C004864	Melon (DHL92) v3.5.1	mewcgB131
ClCG01G013880	Cla001856	Watermelon (97103) v1	wcgwmB156
ClCG01G013880	Cla97C01G012860	Watermelon (97103) v2	wcgwmbB089
ClCG01G013880	Bhi08G000124	Wax gourd	wcgwgoB243
ClCG01G013880	Cucsa.200360	Cucumber (Gy14) v1	cgywcgB371
ClCG01G013880	CmaCh13G002630	Cucurbita maxima (Rimu)	cmawcgB181
ClCG01G013880	CmoCh13G002700	Cucurbita moschata (Rifu)	cmowcgB172
ClCG01G013880	Cp4.1LG20g07420	Cucurbita pepo (Zucchini)	cpewcgB455
ClCG01G013880	MELO3C004864.2	Melon (DHL92) v3.6.1	medwcgB127
ClCG01G013880	Carg23701	Silver-seed gourd	carwcgB0160
ClCG01G013880	CsaV3_1G014150	Cucumber (Chinese Long) v3	cucwcgB016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G013880	Cucurbita maxima (Rimu)	cmawcgB154
ClCG01G013880	Cucurbita moschata (Rifu)	cmowcgB142
ClCG01G013880	Wild cucumber (PI 183967)	cpiwcgB017
ClCG01G013880	Cucumber (Chinese Long) v2	cuwcgB014
ClCG01G013880	Cucurbita pepo (Zucchini)	cpewcgB727
ClCG01G013880	Bottle gourd (USVL1VR-Ls)	lsiwcgB230
ClCG01G013880	Cucumber (Gy14) v2	cgybwcgB014