CmoCh13G002700 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G002700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Cyclin-dependent kinase, regulatory subunit) (Cyclin-dependent kinases regulatory subunit)
Location	Cmo_Chr13 : 2208870 .. 2210058 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATTTCTTCATCTTCTTCTTCTTCTTCGTCGCTCTTCCAAGGTATGCCATTCTTCATCTCCCAACTCTCTCTACGTTTTTCTTTCGATTTTGAATCTCTTTCTCTGATCTTGTTCGGATTTCTTCAGATTGAACAAGCGCTTGTGATCTTTTTGTCACAAATCCGGTGCGATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGTCTGTAACTTCTCTTCCTCGTCTGATCTACGATTACGGACTTTTTTTTATTTTATGCTGTGATTTTCTCCATCGGCATGGTTTGATTTTCATGGTTTTTGTTGATGGATGTTTTAGGCATGTCGTGCTTACTCCTGATGTGGCCAAACTTCTGCCCAAGAATCGCCTTCTTTCTGAGGTAAGTAATTTCACGATTCTCCTGTGTGGAATTGAAATTGGATGTTCATGATTATCCTGTTCAAATTTTCTTGTGTTTAAATCCTGTTCTGCTAATCGGAAATGTAATTAAATTGGAAGAGCGATCTCTTACATCGTACTGTGAACCCTAGCGGTTTCCAACACTGGGAATCATAGATTGTGGCTGATTGATTGTGTGATAGAATCTGGATGCCTTGAATTCATTGTAATTCGGTTAAGTGATGATGAACAGAATGAATGGCGAGCGATTGGGGTTCAGCAGAGCCGTGGATGGGTGCATTATGCAATTCACCGCCCAGAGCCGCACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGCAGATTCTAGCCAAGTGATAGGTTTATTATCTTTATTCTCTAGAAACACTATATTTTGTCTAGAACACTAATGGAATCTCTCCCTACAAATCAAAAGAAGAAGAGAAAAATCAGGAAGCTCTGTGGCCCAGTGAGATCTCTGTCATAGTCATAAGCCCTCATTGATCTTGAATTTGTGGTTTTATATTGCTTTGGTATAAAAATATGGTTTTATCCTCTCCTGTTCTTCATGGCTGCCATCAATTACTTCTGACTTTATTGTTGAGATTCTCCTTAATGGATTATCCAATGTTATTTTCAACATTACTTGTAGGGCACAAGTATTGGATAGAAAAATCTTGAGAATGTGAACAGAATATCACTGGTATAATCATCAATTATTCATATATGACCGACCCT

mRNA sequence

CACATTTCTTCATCTTCTTCTTCTTCTTCGTCGCTCTTCCAAGATTGAACAAGCGCTTGTGATCTTTTTGTCACAAATCCGGTGCGATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTCGTGCTTACTCCTGATGTGGCCAAACTTCTGCCCAAGAATCGCCTTCTTTCTGAGAATGAATGGCGAGCGATTGGGGTTCAGCAGAGCCGTGGATGGGTGCATTATGCAATTCACCGCCCAGAGCCGCACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGCAGATTCTAGCCAAGTGATAGGTTTATTATCTTTATTCTCTAGAAACACTATATTTTGTCTAGAACACTAATGGAATCTCTCCCTACAAATCAAAAGAAGAAGAGAAAAATCAGGAAGCTCTGTGGCCCAGTGAGATCTCTGTCATAGTCATAAGCCCTCATTGATCTTGAATTTGTGGTTTTATATTGCTTTGGTATAAAAATATGGTTTTATCCTCTCCTGTTCTTCATGGCTGCCATCAATTACTTCTGACTTTATTGTTGAGATTCTCCTTAATGGATTATCCAATGTTATTTTCAACATTACTTGTAGGGCACAAGTATTGGATAGAAAAATCTTGAGAATGTGAACAGAATATCACTGGTATAATCATCAATTATTCATATATGACCGACCCT

Coding sequence (CDS)

ATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTCGTGCTTACTCCTGATGTGGCCAAACTTCTGCCCAAGAATCGCCTTCTTTCTGAGAATGAATGGCGAGCGATTGGGGTTCAGCAGAGCCGTGGATGGGTGCATTATGCAATTCACCGCCCAGAGCCGCACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGCAGATTCTAGCCAAGTGA

Homology

[Close]

BLAST of CmoCh13G002700 vs. Swiss-Prot
Match: CKS1_ARATH (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 8.3e-41
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIL 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of CmoCh13G002700 vs. Swiss-Prot
Match: CKS1_ORYSI (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica GN=CKS1 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 7.8e-39
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of CmoCh13G002700 vs. Swiss-Prot
Match: CKS1_ORYSJ (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN=CKS1 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 7.8e-39
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of CmoCh13G002700 vs. Swiss-Prot
Match: CKS2_ARATH (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-36
Identity = 69/80 (86.25%), Postives = 76/80 (95.00%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVL P+VAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of CmoCh13G002700 vs. Swiss-Prot
Match: CKS1_PHYPO (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.0e-28
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 4  IQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+L PDVAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]

BLAST of CmoCh13G002700 vs. TrEMBL
Match: A0A0A0LY04_CUCSA (Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus GN=Csa_1G132710 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-43
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CmoCh13G002700 vs. TrEMBL
Match: A0A059AAM5_EUCGR (Cyclin-dependent kinases regulatory subunit (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_J00392 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-41
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1   MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
           MGQIQYSEKYFDD YEYRHVVL PDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 45  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 104

Query: 61  EPHIMLFRRPLNYQQQQENQAQQQILAK 89
           EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 105 EPHIMLFRRPLNYQQQQENQAQQNMLAK 132

[Close]

BLAST of CmoCh13G002700 vs. TrEMBL
Match: F8SUI5_MALDO (Cyclin-dependent kinases regulatory subunit OS=Malus domestica GN=CKS1 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-41
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVL  DVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPQDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQA QQ+LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAAQQVLAK 88

[Close]

BLAST of CmoCh13G002700 vs. TrEMBL
Match: A0A067EYT6_CITSI (Cyclin-dependent kinases regulatory subunit OS=Citrus sinensis GN=CISIN_1g034642mg PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.6e-41
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PDVAKLLPKNRLLSE EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNILAK 88

[Close]

BLAST of CmoCh13G002700 vs. TrEMBL
Match: V4SFU4_9ROSI (Cyclin-dependent kinases regulatory subunit OS=Citrus clementina GN=CICLE_v10029696mg PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.6e-41
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PDVAKLLPKNRLLSE EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ ILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNILAK 88

[Close]

BLAST of CmoCh13G002700 vs. TAIR10
Match: AT2G27960.1 (AT2G27960.1 cyclin-dependent kinase-subunit 1)

HSP 1 Score: 167.2 bits (422), Expect = 4.7e-42
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQIL 87
          EPHIMLFRRPLNYQQQQENQAQ  ++
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQNMLV 86

[Close]

BLAST of CmoCh13G002700 vs. TAIR10
Match: AT2G27970.1 (AT2G27970.1 CDK-subunit 2)

HSP 1 Score: 152.9 bits (385), Expect = 9.1e-38
Identity = 69/80 (86.25%), Postives = 76/80 (95.00%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVL P+VAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQ 81
          EPHIMLFRRPLNYQQ+ + Q
Sbjct: 61 EPHIMLFRRPLNYQQEHQAQ 80

[Close]

BLAST of CmoCh13G002700 vs. NCBI nr
Match: gi|659071885|ref|XP_008462400.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 3.0e-43
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQILAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 88

[Close]

BLAST of CmoCh13G002700 vs. NCBI nr
Match: gi|720036280|ref|XP_010267302.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera])

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-41
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL P+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQQ+LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQQMLAK 88

[Close]

BLAST of CmoCh13G002700 vs. NCBI nr
Match: gi|629084359|gb|KCW50716.1| (hypothetical protein EUGRSUZ_J00392, partial [Eucalyptus grandis])

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-41
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1   MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
           MGQIQYSEKYFDD YEYRHVVL PDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 45  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 104

Query: 61  EPHIMLFRRPLNYQQQQENQAQQQILAK 89
           EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 105 EPHIMLFRRPLNYQQQQENQAQQNMLAK 132

[Close]

BLAST of CmoCh13G002700 vs. NCBI nr
Match: gi|702473805|ref|XP_010031422.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Eucalyptus grandis])

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-41
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNMLAK 88

[Close]

BLAST of CmoCh13G002700 vs. NCBI nr
Match: gi|697166668|ref|XP_009592163.1| (PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nicotiana tomentosiformis])

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-41
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVL PDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENQAQQQILAK 89
          EPHIMLFRRPLNYQQQQENQAQQ +LAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQAMLAK 88

The following BLAST results are available for this feature:

BLAST of CmoCh13G002700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CKS1_ARATH	8.3e-41	89.53	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana GN=CKS1 PE...	[more]
CKS1_ORYSI	7.8e-39	92.59	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica GN=C...	[more]
CKS1_ORYSJ	7.8e-39	92.59	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN...	[more]
CKS2_ARATH	1.6e-36	86.25	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE...	[more]
CKS1_PHYPO	8.0e-28	80.30	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum PE...	[more]

BLAST of CmoCh13G002700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY04_CUCSA	2.1e-43	98.86	Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus GN=Csa_1G132710 P...	[more]
A0A059AAM5_EUCGR	1.2e-41	95.45	Cyclin-dependent kinases regulatory subunit (Fragment) OS=Eucalyptus grandis GN=...	[more]
F8SUI5_MALDO	2.0e-41	95.45	Cyclin-dependent kinases regulatory subunit OS=Malus domestica GN=CKS1 PE=2 SV=1	[more]
A0A067EYT6_CITSI	2.6e-41	95.45	Cyclin-dependent kinases regulatory subunit OS=Citrus sinensis GN=CISIN_1g034642...	[more]
V4SFU4_9ROSI	2.6e-41	95.45	Cyclin-dependent kinases regulatory subunit OS=Citrus clementina GN=CICLE_v10029...	[more]

BLAST of CmoCh13G002700 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27960.1	4.7e-42	89.53	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	9.1e-38	86.25	CDK-subunit 2	[more]

BLAST of CmoCh13G002700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071885\|ref\|XP_008462400.1\|	3.0e-43	98.86	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Cucumis melo]	[more]
gi\|720036280\|ref\|XP_010267302.1\|	1.3e-41	95.45	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nelumbo nucifera]	[more]
gi\|629084359\|gb\|KCW50716.1\|	1.7e-41	95.45	hypothetical protein EUGRSUZ_J00392, partial [Eucalyptus grandis]	[more]
gi\|702473805\|ref\|XP_010031422.1\|	1.7e-41	95.45	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Eucalyptus grandis]	[more]
gi\|697166668\|ref\|XP_009592163.1\|	2.2e-41	95.45	PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Nicotiana tomentosifor...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000789	Cyclin-dep_kinase_reg-sub

Vocabulary: **Biological Process**
Term	Definition
GO:0007049	cell cycle

Vocabulary: **Molecular Function**
Term	Definition
GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0045736	negative regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0010440	stomatal lineage progression
biological_process	GO:0007049	cell cycle
biological_process	GO:0045859	regulation of protein kinase activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002700.1	CmoCh13G002700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 40..54 score: 9.4E-26coord: 3..17 score: 9.4E-26coord: 55..69 score: 9.4E-26coord: 18..32 score: 9.4
IPR000789	Cyclin-dependent kinase, regulatory subunit	GENE3D	G3DSA:3.30.170.10		coord: 1..76 score: 6.6
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 score: 9.4
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 score: 1.1
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24 scor
IPR000789	Cyclin-dependent kinase, regulatory subunit	unknown	SSF55637	Cell cycle regulatory proteins	coord: 1..83 score: 6.93
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..84 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G002700	Cucsa.200360	Cucumber (Gy14) v1	cgycmoB0594
CmoCh13G002700	CmaCh13G002630	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G002700	Cla001856	Watermelon (97103) v1	cmowmB191
CmoCh13G002700	MELO3C004864	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G002700	ClCG01G013880	Watermelon (Charleston Gray)	cmowcgB172
CmoCh13G002700	Cp4.1LG20g07420	Cucurbita pepo (Zucchini)	cmocpeB203
CmoCh13G002700	MELO3C004864.2	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G002700	CsaV3_1G014150	Cucumber (Chinese Long) v3	cmocucB0221
CmoCh13G002700	Cla97C01G012860	Watermelon (97103) v2	cmowmbB193
CmoCh13G002700	Bhi08G000124	Wax gourd	cmowgoB0259
CmoCh13G002700	CsGy1G013980	Cucumber (Gy14) v2	cgybcmoB057
CmoCh13G002700	Carg23701	Silver-seed gourd	carcmoB0234

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G002700	Cucurbita maxima (Rimu)	cmacmoB179
CmoCh13G002700	Wild cucumber (PI 183967)	cmocpiB192
CmoCh13G002700	Cucumber (Chinese Long) v2	cmocuB188
CmoCh13G002700	Cucurbita pepo (Zucchini)	cmocpeB216
CmoCh13G002700	Bottle gourd (USVL1VR-Ls)	cmolsiB203
CmoCh13G002700	Cucurbita moschata (Rifu)	cmocmoB135