Csa1G063510 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G063510
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 6692209 .. 6692553 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTTTTAATGACAGTAAGGAGAAATGGTGGTTATTCGAAGATGGAGAAGGAAGACCCAGATGAGAAAAAGCATAGACAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAAGCAAGTAATGGCAGTAAGAGAAGACCTTCATGTCTAAGAATCAGAATAAGGAAGTTTAAGTTGAGGATGGGAAGAAGGTGGAAGAAGATGAAGAAGACAATGGCAATGAGTTTTTCAACGGCAAGAATTGGGATTTGCAACCAATTTGGACAGCTTAGAAGTTGTAAAAGTTTGTTTGGAAAAACAAAGGTGGAAACTTTGAACTTTCCTACTGCTTTGGTTGCTTGA

mRNA sequence

ATGAGTGTTTTAATGACAGTAAGGAGAAATGGTGGTTATTCGAAGATGGAGAAGGAAGACCCAGATGAGAAAAAGCATAGACAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAAGCAAGTAATGGCAGTAAGAGAAGACCTTCATGTCTAAGAATCAGAATAAGGAAGTTTAAGTTGAGGATGGGAAGAAGGTGGAAGAAGATGAAGAAGACAATGGCAATGAGTTTTTCAACGGCAAGAATTGGGATTTGCAACCAATTTGGACAGCTTAGAAGTTGTAAAAGTTTGTTTGGAAAAACAAAGGTGGAAACTTTGAACTTTCCTACTGCTTTGGTTGCTTGA

Coding sequence (CDS)

ATGAGTGTTTTAATGACAGTAAGGAGAAATGGTGGTTATTCGAAGATGGAGAAGGAAGACCCAGATGAGAAAAAGCATAGACAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAAGCAAGTAATGGCAGTAAGAGAAGACCTTCATGTCTAAGAATCAGAATAAGGAAGTTTAAGTTGAGGATGGGAAGAAGGTGGAAGAAGATGAAGAAGACAATGGCAATGAGTTTTTCAACGGCAAGAATTGGGATTTGCAACCAATTTGGACAGCTTAGAAGTTGTAAAAGTTTGTTTGGAAAAACAAAGGTGGAAACTTTGAACTTTCCTACTGCTTTGGTTGCTTGA

Protein sequence

MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKLRMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPTALVA*
Homology
[Close]
BLAST of Csa1G063510 vs. TrEMBL
Match: A0A0A0LUT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 8.9e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60
           MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPTALVA 115
           RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPTALVA
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPTALVA 114

[Close]
BLAST of Csa1G063510 vs. TrEMBL
Match: W9RFE3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-21
Identity = 49/96 (51.04%), Postives = 74/96 (77.08%), Query Frame = 1 

Query: 5   MTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKLRMGR 64
           + +R+   YSK++KEDP+E+  R+AQFLIYK+MEQA + S+RRPS LRIRIRK K+++G+
Sbjct: 3   LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMSRRRPSYLRIRIRKLKVKIGK 62

Query: 65  RWKKMKKTMAMSFSTARIGICNQF-GQLRSCKSLFG 100
           R  K++K+M +S S A++ +C Q   Q ++C+ LFG
Sbjct: 63  RLTKLRKSMLLSISAAKVSVCKQVCSQFKTCRRLFG 98

[Close]
BLAST of Csa1G063510 vs. TrEMBL
Match: M5WJH3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 53/95 (55.79%), Postives = 75/95 (78.95%), Query Frame = 1 

Query: 7   VRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKLRMGRRW 66
           +R+   YSKM+KEDP+E  HR+AQFLIYK+++QA   ++RRP  LRIRIRK KL++GRR 
Sbjct: 5   IRKPYAYSKMDKEDPEEVIHRRAQFLIYKVLQQAE--TRRRPVNLRIRIRKLKLKIGRRL 64

Query: 67  KKMKKTMAMSFSTARIGICNQ-FGQLRSCKSLFGK 101
           KK++K+M +S S AR+ +  Q F QL++CK+LFG+
Sbjct: 65  KKLRKSMLLSISAARVCVYKQVFSQLKTCKTLFGR 97

[Close]
BLAST of Csa1G063510 vs. TrEMBL
Match: A0A0A0KJX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 58/113 (51.33%), Postives = 80/113 (70.80%), Query Frame = 1 

Query: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60
           MS+++T R NG Y K++KEDP+E  HR+AQFLI K++E+A   S  +PS LRIRIR+ K+
Sbjct: 1   MSLVLTKRSNG-YCKVDKEDPEEIIHRRAQFLINKVLERAD--SMGKPSYLRIRIRRLKV 60

Query: 61  RMGRRWKKMKKTMAMSFSTARIGICNQ-FGQLRSCKSLFGKTKVETLNFPTAL 113
           R GRR K++KK+   S ST +IG+  Q   Q+R+CKSLFG+ +    NFP  L
Sbjct: 61  RFGRRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLL 110

[Close]
BLAST of Csa1G063510 vs. TrEMBL
Match: A0A072V4B2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.1e-18
Identity = 50/107 (46.73%), Postives = 76/107 (71.03%), Query Frame = 1 

Query: 8   RRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKLRMGRRWK 67
           R+   YSKM+KEDP+E  HR+AQFLIYK++EQA+  S+R+ SCLRI+I K K+++G+R +
Sbjct: 5   RKPYSYSKMDKEDPEELIHRRAQFLIYKVLEQAN--SRRKSSCLRIKISKLKVKIGKRLR 64

Query: 68  KMKKTMAMSFSTARIGICNQ-FGQLRSCKSLFGKTKVETLNFPTALV 114
           +++K +  S S AR+GI      QL++ K LFG+ K   L  P+ ++
Sbjct: 65  RLRKKIISSVSAARVGIHGHVVSQLKTWKRLFGREKQTLLTIPSLMI 109

[Close]
BLAST of Csa1G063510 vs. TAIR10
Match: AT1G11655.1 (AT1G11655.1 unknown protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 32/90 (35.56%), Postives = 55/90 (61.11%), Query Frame = 1 

Query: 13 YSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRP--SCLRIRIRKFKLRMGRRWKKMK 72
          YSKM+KEDP+E   R+A+FLIYK +++A   S+R P  S +R+++   K+++G+R  K++
Sbjct: 10 YSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVKIGKRLAKLR 69

Query: 73 KTMAMSFSTARIGICNQFGQ--LRSCKSLF 99
          +++    S  R G   +     +R+ K +F
Sbjct: 70 RSVV---SAVRFGGIRKHSHNGVRALKKMF 96

[Close]
BLAST of Csa1G063510 vs. TAIR10
Match: AT4G04745.1 (AT4G04745.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 13  YSKMEKEDPDEKKHRQAQFLIYKIMEQASNGS-----KRRPS--CLRIRIRKFKLRMGRR 72
           Y+KMEKEDP E  HR+AQFLI K++E+A + +     +RR S   + IR+   ++R+G++
Sbjct: 37  YTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIRVVGIRMRIGKK 96

[Close]
BLAST of Csa1G063510 vs. NCBI nr
Match: gi|700209431|gb|KGN64527.1| (hypothetical protein Csa_1G063510 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60
           MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPTALVA 115
           RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPTALVA
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPTALVA 114

[Close]
BLAST of Csa1G063510 vs. NCBI nr
Match: gi|659067750|ref|XP_008441119.1| (PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 2.7e-52
Identity = 105/114 (92.11%), Postives = 110/114 (96.49%), Query Frame = 1 

Query: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60
           M +LMTVR+NGGYS+MEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL
Sbjct: 1   MGLLMTVRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPTALVA 115
           R+GRR KKMKKTMAMSFSTARIGIC+Q GQLRSCKSLFGK KVETLNFPTALVA
Sbjct: 61  RIGRRLKKMKKTMAMSFSTARIGICSQLGQLRSCKSLFGKAKVETLNFPTALVA 114

[Close]
BLAST of Csa1G063510 vs. NCBI nr
Match: gi|658020944|ref|XP_008345848.1| (PREDICTED: uncharacterized protein LOC103408808 [Malus domestica])

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-22
Identity = 57/105 (54.29%), Postives = 80/105 (76.19%), Query Frame = 1 

Query: 5   MTVRRN-GGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKLRMG 64
           MT+R++ G YSKM+KEDP+E  HR+AQFLIYK+M+Q     +RRPS LRIR+RK KL++G
Sbjct: 3   MTIRKSYGAYSKMDKEDPEEANHRRAQFLIYKVMQQVE--MRRRPSNLRIRVRKLKLKIG 62

Query: 65  RRWKKMKKTMAMSFSTARIGICNQ-FGQLRSCKSLFGKTKVETLN 108
           RR KK++K+M +S S AR+ +  Q F QL++CK+LFG+     +N
Sbjct: 63  RRLKKLRKSMLLSISAARVCVYKQVFNQLKTCKTLFGRGDQGNIN 105

[Close]
BLAST of Csa1G063510 vs. NCBI nr
Match: gi|694310390|ref|XP_009352780.1| (PREDICTED: uncharacterized protein LOC103944097 [Pyrus x bretschneideri])

HSP 1 Score: 112.8 bits (281), Expect = 3.9e-22
Identity = 57/105 (54.29%), Postives = 80/105 (76.19%), Query Frame = 1 

Query: 5   MTVRRN-GGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKLRMG 64
           MT+R++ G YSKM+KEDP+E  HR+AQFLIYK+M+Q     +RRPS LRIR+RK KL++G
Sbjct: 3   MTIRKSYGAYSKMDKEDPEEVNHRRAQFLIYKVMQQVE--MRRRPSNLRIRVRKLKLKIG 62

Query: 65  RRWKKMKKTMAMSFSTARIGICNQ-FGQLRSCKSLFGKTKVETLN 108
           RR KK++K+M +S S AR+ +  Q F QL++CK+LFG+     +N
Sbjct: 63  RRLKKLRKSMLLSVSAARVCVYKQVFNQLKTCKTLFGRGDQGNIN 105

[Close]
BLAST of Csa1G063510 vs. NCBI nr
Match: gi|694436981|ref|XP_009345563.1| (PREDICTED: uncharacterized protein LOC103937344 [Pyrus x bretschneideri])

HSP 1 Score: 111.7 bits (278), Expect = 8.6e-22
Identity = 57/105 (54.29%), Postives = 79/105 (75.24%), Query Frame = 1 

Query: 5   MTVRRN-GGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKLRMG 64
           MT+R++ G YSKM+KEDP+E  HR+AQFLIYK+M+Q     +RRPS L IR+RK KL++G
Sbjct: 1   MTIRKSYGAYSKMDKEDPEEVNHRRAQFLIYKVMQQVE--MRRRPSNLGIRVRKLKLKIG 60

Query: 65  RRWKKMKKTMAMSFSTARIGICNQ-FGQLRSCKSLFGKTKVETLN 108
           RR KK++KTM +S S AR+ +  Q F QL++CK+LFG+     +N
Sbjct: 61  RRLKKLRKTMLLSVSAARVCVYKQVFNQLKTCKTLFGRGDQGNIN 103

The following BLAST results are available for this feature:
BLAST of Csa1G063510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUT4_CUCSA8.9e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1[more]
W9RFE3_9ROSA3.0e-2151.04Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1[more]
M5WJH3_PRUPE1.5e-2055.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1[more]
A0A0A0KJX3_CUCSA1.9e-2051.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1[more]
A0A072V4B2_MEDTR3.1e-1846.73Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1[more]
BLAST of Csa1G063510 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11655.11.2e-0835.56 unknown protein[more]
AT4G04745.11.5e-0843.28 unknown protein[more]
BLAST of Csa1G063510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209431|gb|KGN64527.1|1.3e-57100.00hypothetical protein Csa_1G063510 [Cucumis sativus][more]
gi|659067750|ref|XP_008441119.1|2.7e-5292.11PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo][more]
gi|658020944|ref|XP_008345848.1|2.3e-2254.29PREDICTED: uncharacterized protein LOC103408808 [Malus domestica][more]
gi|694310390|ref|XP_009352780.1|3.9e-2254.29PREDICTED: uncharacterized protein LOC103944097 [Pyrus x bretschneideri][more]
gi|694436981|ref|XP_009345563.1|8.6e-2254.29PREDICTED: uncharacterized protein LOC103937344 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G063510.1Csa1G063510.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35687FAMILY NOT NAMEDcoord: 1..99
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G063510Cla014458Watermelon (97103) v1cuwmB043
Csa1G063510Cla019387Watermelon (97103) v1cuwmB008
Csa1G063510MELO3C007384Melon (DHL92) v3.5.1cumeB083
Csa1G063510MELO3C002462Melon (DHL92) v3.5.1cumeB027
Csa1G063510ClCG01G022050Watermelon (Charleston Gray)cuwcgB012
Csa1G063510ClCG03G004790Watermelon (Charleston Gray)cuwcgB035
Csa1G063510Lsi01G004190Bottle gourd (USVL1VR-Ls)culsiB019
Csa1G063510MELO3C002462.2Melon (DHL92) v3.6.1cumedB022
Csa1G063510MELO3C007384.2Melon (DHL92) v3.6.1cumedB077
Csa1G063510Cla97C03G055940Watermelon (97103) v2cuwmbB032
Csa1G063510Cla97C01G021690Watermelon (97103) v2cuwmbB000
Csa1G063510Bhi08G001515Wax gourdcuwgoB033
Csa1G063510Bhi03G000437Wax gourdcuwgoB023
Csa1G063510CSPI01G10760Wild cucumber (PI 183967)cpicuB000
Csa1G063510CSPI06G33630Wild cucumber (PI 183967)cpicuB261
Csa1G063510Cucsa.085890Cucumber (Gy14) v1cgycuB087
Csa1G063510Cucsa.045290Cucumber (Gy14) v1cgycuB015
Csa1G063510CmaCh18G002520Cucurbita maxima (Rimu)cmacuB397
Csa1G063510CmaCh13G007350Cucurbita maxima (Rimu)cmacuB218
Csa1G063510CmaCh07G003060Cucurbita maxima (Rimu)cmacuB848
Csa1G063510CmoCh13G007640Cucurbita moschata (Rifu)cmocuB203
Csa1G063510CmoCh07G002950Cucurbita moschata (Rifu)cmocuB835
Csa1G063510Cp4.1LG09g08980Cucurbita pepo (Zucchini)cpecuB029
Csa1G063510Cp4.1LG19g07860Cucurbita pepo (Zucchini)cpecuB474
Csa1G063510Cp4.1LG20g03770Cucurbita pepo (Zucchini)cpecuB506
Csa1G063510Carg07543Silver-seed gourdcarcuB1020
Csa1G063510Carg07835Silver-seed gourdcarcuB0661
Csa1G063510Carg06852Silver-seed gourdcarcuB0523
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa1G063510Csa6G514800Cucumber (Chinese Long) v2cucuB035
The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G063510Cucurbita pepo (Zucchini)cpecuB055
Csa1G063510Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G063510Cucumber (Gy14) v2cgybcuB001
Csa1G063510Cucumber (Gy14) v2cgybcuB239
Csa1G063510Silver-seed gourdcarcuB0945
Csa1G063510Cucurbita maxima (Rimu)cmacuB649
Csa1G063510Cucurbita moschata (Rifu)cmocuB380
Csa1G063510Cucurbita moschata (Rifu)cmocuB637