CmaCh13G007350 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G007350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr13 : 6514719 .. 6515057 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGGTTAGTGACAAGGAGGCAAAATGGGTACTCAAGGATGGAGAAGGAAGACCCAGAAGAGAAAAAGCACAGGCAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAACAGTGGCACTAGGAGAAGATCTTCGTGTCTCAGAATCAGAATAAGGAAGTTTAAGCTAAGGATTGGGAGGAGGTTGAAGAAGCTGAAGAAGACGATGTCAATGGGGTTTTGCACTGCAAGAAATGGGATCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAGAGCTTGTTTGGACGACCTAAGGAGGAAGCTTTGGCCTTTCCTTCTTTGGTTTCTTGA

mRNA sequence

ATGAGTGGGTTAGTGACAAGGAGGCAAAATGGGTACTCAAGGATGGAGAAGGAAGACCCAGAAGAGAAAAAGCACAGGCAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAACAGTGGCACTAGGAGAAGATCTTCGTGTCTCAGAATCAGAATAAGGAAGTTTAAGCTAAGGATTGGGAGGAGGTTGAAGAAGCTGAAGAAGACGATGTCAATGGGGTTTTGCACTGCAAGAAATGGGATCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAGAGCTTGTTTGGACGACCTAAGGAGGAAGCTTTGGCCTTTCCTTCTTTGGTTTCTTGA

Coding sequence (CDS)

ATGAGTGGGTTAGTGACAAGGAGGCAAAATGGGTACTCAAGGATGGAGAAGGAAGACCCAGAAGAGAAAAAGCACAGGCAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAACAGTGGCACTAGGAGAAGATCTTCGTGTCTCAGAATCAGAATAAGGAAGTTTAAGCTAAGGATTGGGAGGAGGTTGAAGAAGCTGAAGAAGACGATGTCAATGGGGTTTTGCACTGCAAGAAATGGGATCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAGAGCTTGTTTGGACGACCTAAGGAGGAAGCTTTGGCCTTTCCTTCTTTGGTTTCTTGA

Protein sequence

MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLRIGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRPKEEALAFPSLVS
Homology
[Close]
BLAST of CmaCh13G007350 vs. TrEMBL
Match: A0A0A0LUT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.4e-37
Identity = 83/110 (75.45%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MSGLVT-RRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKL 60
           MS L+T RR  GYS+MEKEDP+EKKHRQAQFLIYKIMEQA++G++RR SCLRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRPKEEALAFPS 110
           R+GRR KK+KKTM+M F TAR GIC QFGQLR+CKSLFG+ K E L FP+
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]
BLAST of CmaCh13G007350 vs. TrEMBL
Match: W9RFE3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 1 

Query: 4  LVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLRIGR 63
          LV R+ N YS+++KEDPEE+  R+AQFLIYK+MEQA+S +RRR S LRIRIRK K++IG+
Sbjct: 3  LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMSRRRPSYLRIRIRKLKVKIGK 62

Query: 64 RLKKLKKTMSMGFCTARNGICKQF-GQLRTCKSLFG 99
          RL KL+K+M +    A+  +CKQ   Q +TC+ LFG
Sbjct: 63 RLTKLRKSMLLSISAAKVSVCKQVCSQFKTCRRLFG 98

[Close]
BLAST of CmaCh13G007350 vs. TrEMBL
Match: M5WJH3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.6e-19
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 1 

Query: 4   LVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLRIGR 63
           ++ R+   YS+M+KEDPEE  HR+AQFLIYK+++QA   TRRR   LRIRIRK KL+IGR
Sbjct: 3   VMIRKPYAYSKMDKEDPEEVIHRRAQFLIYKVLQQAE--TRRRPVNLRIRIRKLKLKIGR 62

Query: 64  RLKKLKKTMSMGFCTARNGICKQ-FGQLRTCKSLFGR 100
           RLKKL+K+M +    AR  + KQ F QL+TCK+LFGR
Sbjct: 63  RLKKLRKSMLLSISAARVCVYKQVFSQLKTCKTLFGR 97

[Close]
BLAST of CmaCh13G007350 vs. TrEMBL
Match: A0A072V4B2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.6e-19
Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = 1 

Query: 5   VTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLRIGRR 64
           ++R+   YS+M+KEDPEE  HR+AQFLIYK++EQANS  RR+SSCLRI+I K K++IG+R
Sbjct: 3   LSRKPYSYSKMDKEDPEELIHRRAQFLIYKVLEQANS--RRKSSCLRIKISKLKVKIGKR 62

Query: 65  LKKLKKTMSMGFCTARNGICKQ-FGQLRTCKSLFGRPKEEALAFPSLV 112
           L++L+K +      AR GI      QL+T K LFGR K+  L  PSL+
Sbjct: 63  LRRLRKKIISSVSAARVGIHGHVVSQLKTWKRLFGREKQTLLTIPSLM 108

[Close]
BLAST of CmaCh13G007350 vs. TrEMBL
Match: A0A0A0KJX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-18
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1 

Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLR 60
           MS ++T+R NGY +++KEDPEE  HR+AQFLI K++E+A+S    + S LRIRIR+ K+R
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADS--MGKPSYLRIRIRRLKVR 60

Query: 61  IGRRLKKLKKTMSMGFCTARNGICKQ-FGQLRTCKSLFGRPKEEALAFPSLVS 113
            GRRLK+LKK+      T + G+ KQ   Q+R CKSLFGR +     FP L+S
Sbjct: 61  FGRRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLS 111

[Close]
BLAST of CmaCh13G007350 vs. TAIR10
Match: AT4G04745.1 (AT4G04745.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-09
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 1 

Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGT-----RRRSS--CLRIR 60
           M+ +V      Y++MEKEDP+E  HR+AQFLI K++E+A+S T     RRRSS   + IR
Sbjct: 26  MALMVKNSPYEYTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIR 85

Query: 61  IRKFKLRIGRRLKKLKKT 72
           +   ++RIG++L+KL+KT
Sbjct: 86  VVGIRMRIGKKLRKLRKT 103

[Close]
BLAST of CmaCh13G007350 vs. TAIR10
Match: AT1G11655.1 (AT1G11655.1 unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 9.6e-08
Identity = 29/63 (46.03%), Postives = 49/63 (77.78%), Query Frame = 1 

Query: 12 YSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRR--RSSCLRIRIRKFKLRIGRRLKKLK 71
          YS+M+KEDPEE   R+A+FLIYK +++A+  +RR   SS +R+++   K++IG+RL KL+
Sbjct: 10 YSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVKIGKRLAKLR 69

Query: 72 KTM 73
          +++
Sbjct: 70 RSV 72

[Close]
BLAST of CmaCh13G007350 vs. NCBI nr
Match: gi|700209431|gb|KGN64527.1| (hypothetical protein Csa_1G063510 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 9.2e-37
Identity = 83/110 (75.45%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MSGLVT-RRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKL 60
           MS L+T RR  GYS+MEKEDP+EKKHRQAQFLIYKIMEQA++G++RR SCLRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRPKEEALAFPS 110
           R+GRR KK+KKTM+M F TAR GIC QFGQLR+CKSLFG+ K E L FP+
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]
BLAST of CmaCh13G007350 vs. NCBI nr
Match: gi|659067750|ref|XP_008441119.1| (PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 9.2e-37
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 4   LVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLRIGR 63
           +  R+  GYSRMEKEDP+EKKHRQAQFLIYKIMEQA++G++RR SCLRIRIRKFKLRIGR
Sbjct: 5   MTVRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKLRIGR 64

Query: 64  RLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRPKEEALAFPS 110
           RLKK+KKTM+M F TAR GIC Q GQLR+CKSLFG+ K E L FP+
Sbjct: 65  RLKKMKKTMAMSFSTARIGICSQLGQLRSCKSLFGKAKVETLNFPT 110

[Close]
BLAST of CmaCh13G007350 vs. NCBI nr
Match: gi|703087469|ref|XP_010093280.1| (hypothetical protein L484_006294 [Morus notabilis])

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-20
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 1 

Query: 4  LVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLRIGR 63
          LV R+ N YS+++KEDPEE+  R+AQFLIYK+MEQA+S +RRR S LRIRIRK K++IG+
Sbjct: 3  LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMSRRRPSYLRIRIRKLKVKIGK 62

Query: 64 RLKKLKKTMSMGFCTARNGICKQF-GQLRTCKSLFG 99
          RL KL+K+M +    A+  +CKQ   Q +TC+ LFG
Sbjct: 63 RLTKLRKSMLLSISAAKVSVCKQVCSQFKTCRRLFG 98

[Close]
BLAST of CmaCh13G007350 vs. NCBI nr
Match: gi|694351115|ref|XP_009357442.1| (PREDICTED: uncharacterized protein LOC103948166 [Pyrus x bretschneideri])

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 56/100 (56.00%), Postives = 77/100 (77.00%), Query Frame = 1 

Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLR 60
           M+ ++ +   GYS+++KEDPE+  HR+AQFLIYK+++QA   TRRR S LRIRIRK K++
Sbjct: 1   MAVMIRKSYGGYSKLDKEDPEDVNHRRAQFLIYKVLQQAE--TRRRPSNLRIRIRKLKVK 60

Query: 61  IGRRLKKLKKTMSMGFCTARNGICKQ-FGQLRTCKSLFGR 100
           IGRRLKKL+K+M +   TAR  + K+ F QL+TC +LFGR
Sbjct: 61  IGRRLKKLRKSMLLSISTARVCVYKRVFNQLKTCMTLFGR 98

[Close]
BLAST of CmaCh13G007350 vs. NCBI nr
Match: gi|658020944|ref|XP_008345848.1| (PREDICTED: uncharacterized protein LOC103408808 [Malus domestica])

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-19
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 1 

Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLR 60
           M+  + +    YS+M+KEDPEE  HR+AQFLIYK+M+Q     RRR S LRIR+RK KL+
Sbjct: 1   MAMTIRKSYGAYSKMDKEDPEEANHRRAQFLIYKVMQQVE--MRRRPSNLRIRVRKLKLK 60

Query: 61  IGRRLKKLKKTMSMGFCTARNGICKQ-FGQLRTCKSLFGR 100
           IGRRLKKL+K+M +    AR  + KQ F QL+TCK+LFGR
Sbjct: 61  IGRRLKKLRKSMLLSISAARVCVYKQVFNQLKTCKTLFGR 98

The following BLAST results are available for this feature:
BLAST of CmaCh13G007350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh13G007350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUT4_CUCSA6.4e-3775.45Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1[more]
W9RFE3_9ROSA1.9e-2057.29Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1[more]
M5WJH3_PRUPE4.6e-1959.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1[more]
A0A072V4B2_MEDTR4.6e-1953.70Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1[more]
A0A0A0KJX3_CUCSA3.0e-1851.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1[more]
BLAST of CmaCh13G007350 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G04745.11.7e-0947.44 unknown protein[more]
AT1G11655.19.6e-0846.03 unknown protein[more]
BLAST of CmaCh13G007350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209431|gb|KGN64527.1|9.2e-3775.45hypothetical protein Csa_1G063510 [Cucumis sativus][more]
gi|659067750|ref|XP_008441119.1|9.2e-3775.47PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo][more]
gi|703087469|ref|XP_010093280.1|2.7e-2057.29hypothetical protein L484_006294 [Morus notabilis][more]
gi|694351115|ref|XP_009357442.1|3.0e-1956.00PREDICTED: uncharacterized protein LOC103948166 [Pyrus x bretschneideri][more]
gi|658020944|ref|XP_008345848.1|5.1e-1957.00PREDICTED: uncharacterized protein LOC103408808 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G007350.1CmaCh13G007350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35687FAMILY NOT NAMEDcoord: 1..98
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G007350Cucsa.045290Cucumber (Gy14) v1cgycmaB0035
CmaCh13G007350Cucsa.085890Cucumber (Gy14) v1cgycmaB0162
CmaCh13G007350Cla014458Watermelon (97103) v1cmawmB201
CmaCh13G007350Cla019387Watermelon (97103) v1cmawmB188
CmaCh13G007350Csa1G063510Cucumber (Chinese Long) v2cmacuB218
CmaCh13G007350Csa6G514800Cucumber (Chinese Long) v2cmacuB229
CmaCh13G007350MELO3C002462Melon (DHL92) v3.5.1cmameB192
CmaCh13G007350MELO3C007384Melon (DHL92) v3.5.1cmameB211
CmaCh13G007350ClCG03G004790Watermelon (Charleston Gray)cmawcgB197
CmaCh13G007350ClCG01G022050Watermelon (Charleston Gray)cmawcgB185
CmaCh13G007350CSPI06G33630Wild cucumber (PI 183967)cmacpiB231
CmaCh13G007350CSPI01G10760Wild cucumber (PI 183967)cmacpiB219
CmaCh13G007350CmoCh13G007640Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G007350Cp4.1LG09g08980Cucurbita pepo (Zucchini)cmacpeB212
CmaCh13G007350Cp4.1LG20g03770Cucurbita pepo (Zucchini)cmacpeB234
CmaCh13G007350MELO3C002462.2Melon (DHL92) v3.6.1cmamedB213
CmaCh13G007350CsaV3_1G010830Cucumber (Chinese Long) v3cmacucB0249
CmaCh13G007350CsaV3_6G049110Cucumber (Chinese Long) v3cmacucB0265
CmaCh13G007350Cla97C03G055940Watermelon (97103) v2cmawmbB228
CmaCh13G007350Bhi08G001515Wax gourdcmawgoB0270
CmaCh13G007350Bhi03G000437Wax gourdcmawgoB0246
CmaCh13G007350Carg07835Silver-seed gourdcarcmaB0906
CmaCh13G007350Carg06852Silver-seed gourdcarcmaB0691
CmaCh13G007350Carg07543Silver-seed gourdcarcmaB1393
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh13G007350CmaCh18G002520Cucurbita maxima (Rimu)cmacmaB209
CmaCh13G007350CmaCh07G003060Cucurbita maxima (Rimu)cmacmaB238
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G007350Cucumber (Chinese Long) v3cmacucB0269
CmaCh13G007350Watermelon (97103) v2cmawmbB221
CmaCh13G007350Watermelon (97103) v2cmawmbB212
CmaCh13G007350Wax gourdcmawgoB0257
CmaCh13G007350Cucurbita maxima (Rimu)cmacmaB222
CmaCh13G007350Cucurbita maxima (Rimu)cmacmaB231
CmaCh13G007350Cucumber (Gy14) v1cgycmaB0406
CmaCh13G007350Cucurbita moschata (Rifu)cmacmoB207
CmaCh13G007350Cucurbita moschata (Rifu)cmacmoB223
CmaCh13G007350Cucurbita moschata (Rifu)cmacmoB235
CmaCh13G007350Cucurbita moschata (Rifu)cmacmoB240
CmaCh13G007350Wild cucumber (PI 183967)cmacpiB233
CmaCh13G007350Cucumber (Chinese Long) v2cmacuB226
CmaCh13G007350Cucumber (Chinese Long) v2cmacuB231
CmaCh13G007350Melon (DHL92) v3.5.1cmameB205
CmaCh13G007350Watermelon (Charleston Gray)cmawcgB190
CmaCh13G007350Cucurbita pepo (Zucchini)cmacpeB219
CmaCh13G007350Cucurbita pepo (Zucchini)cmacpeB232
CmaCh13G007350Bottle gourd (USVL1VR-Ls)cmalsiB198
CmaCh13G007350Bottle gourd (USVL1VR-Ls)cmalsiB199
CmaCh13G007350Bottle gourd (USVL1VR-Ls)cmalsiB207
CmaCh13G007350Cucumber (Gy14) v2cgybcmaB074
CmaCh13G007350Cucumber (Gy14) v2cgybcmaB726
CmaCh13G007350Cucumber (Gy14) v2cgybcmaB909
CmaCh13G007350Melon (DHL92) v3.6.1cmamedB233
CmaCh13G007350Melon (DHL92) v3.6.1cmamedB225
CmaCh13G007350Silver-seed gourdcarcmaB1213
CmaCh13G007350Silver-seed gourdcarcmaB1274