Cp4.1LG09g08980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g08980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG09 : 8219219 .. 8219590 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTTATGATGAAACGTAAGCTAAATGGGTACTCAAGAATGGAGAAGGAAGACCCAGAGGAGAAAAGGCACAGACAAGCTCTGTTCTTGATTTACAAGATAATGGAGCAGGCAAGCAATGGCAATGGCAATGGCAATGGCAATGGCAATGGCAACAGGAGGAGGCCTTCTTGTCTCAGAATCAGAACACGAAAGCTTAAGCTAAGGATTGGAAGGAGGTTGAAGAAGCTGAAGAAGGGCATGTCAATGTGTTTGTCCACAGCAAGAATTGGGCTCTGCAACCAATTTCAACAGCTTAGAACTTGTAAGAGCGCGCTGCGGCGACAACCCAAGGTGGAAGCTTTGCCCTTTCCTTCTTTGGTCACTTAA

mRNA sequence

ATGAGTCTTATGATGAAACGTAAGCTAAATGGGTACTCAAGAATGGAGAAGGAAGACCCAGAGGAGAAAAGGCACAGACAAGCTCTGTTCTTGATTTACAAGATAATGGAGCAGGCAAGCAATGGCAATGGCAATGGCAATGGCAATGGCAATGGCAACAGGAGGAGGCCTTCTTGTCTCAGAATCAGAACACGAAAGCTTAAGCTAAGGATTGGAAGGAGGTTGAAGAAGCTGAAGAAGGGCATGTCAATGTGTTTGTCCACAGCAAGAATTGGGCTCTGCAACCAATTTCAACAGCTTAGAACTTGTAAGAGCGCGCTGCGGCGACAACCCAAGGTGGAAGCTTTGCCCTTTCCTTCTTTGGTCACTTAA

Coding sequence (CDS)

ATGAGTCTTATGATGAAACGTAAGCTAAATGGGTACTCAAGAATGGAGAAGGAAGACCCAGAGGAGAAAAGGCACAGACAAGCTCTGTTCTTGATTTACAAGATAATGGAGCAGGCAAGCAATGGCAATGGCAATGGCAATGGCAATGGCAATGGCAACAGGAGGAGGCCTTCTTGTCTCAGAATCAGAACACGAAAGCTTAAGCTAAGGATTGGAAGGAGGTTGAAGAAGCTGAAGAAGGGCATGTCAATGTGTTTGTCCACAGCAAGAATTGGGCTCTGCAACCAATTTCAACAGCTTAGAACTTGTAAGAGCGCGCTGCGGCGACAACCCAAGGTGGAAGCTTTGCCCTTTCCTTCTTTGGTCACTTAA

Protein sequence

MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALPFPSLVT
Homology
[Close]
BLAST of Cp4.1LG09g08980 vs. TrEMBL
Match: A0A0A0LUT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-29
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 1 

Query: 3   LMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRI 62
           LM  R+  GYS+MEKEDP+EK+HRQA FLIYKIMEQASNG+          +RRPSCLRI
Sbjct: 4   LMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGS----------KRRPSCLRI 63

Query: 63  RTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALPFPS 121
           R RK KLR+GRR KK+KK M+M  STARIG+CNQF QLR+CKS L  + KVE L FP+
Sbjct: 64  RIRKFKLRMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKS-LFGKTKVETLNFPT 110

[Close]
BLAST of Cp4.1LG09g08980 vs. TrEMBL
Match: M5WJH3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.1e-17
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 1 

Query: 4   MMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRIR 63
           +M RK   YS+M+KEDPEE  HR+A FLIYK+++QA              RRRP  LRIR
Sbjct: 3   VMIRKPYAYSKMDKEDPEEVIHRRAQFLIYKVLQQAET------------RRRPVNLRIR 62

Query: 64  TRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRRQPKVEALPFPSLV 123
            RKLKL+IGRRLKKL+K M + +S AR+ +  Q F QL+TCK+   R         P+L 
Sbjct: 63  IRKLKLKIGRRLKKLRKSMLLSISAARVCVYKQVFSQLKTCKTLFGRGEGTIGASLPALF 111

[Close]
BLAST of Cp4.1LG09g08980 vs. TrEMBL
Match: W9RFE3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = 1 

Query: 4   MMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRIR 63
           ++ RK N YS+++KEDPEE+  R+A FLIYK+MEQA + +          RRRPS LRIR
Sbjct: 3   LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMS----------RRRPSYLRIR 62

Query: 64  TRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQF-QQLRTCK 105
            RKLK++IG+RL KL+K M + +S A++ +C Q   Q +TC+
Sbjct: 63  IRKLKVKIGKRLTKLRKSMLLSISAAKVSVCKQVCSQFKTCR 94

[Close]
BLAST of Cp4.1LG09g08980 vs. TrEMBL
Match: A0A0A0KJX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 1 

Query: 1   MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCL 60
           MSL++ ++ NGY +++KEDPEE  HR+A FLI K++E+A             +  +PS L
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERAD------------SMGKPSYL 60

Query: 61  RIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRRQPKVEALPFP 120
           RIR R+LK+R GRRLK+LKK     +ST +IG+  Q   Q+R CKS   R+ +     FP
Sbjct: 61  RIRIRRLKVRFGRRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRK-QTNFANFP 111

Query: 121 SLVT 124
            L++
Sbjct: 121 VLLS 111

[Close]
BLAST of Cp4.1LG09g08980 vs. TrEMBL
Match: A0A072V4B2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = 1 

Query: 3   LMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRI 62
           + + RK   YS+M+KEDPEE  HR+A FLIYK++EQA+            +RR+ SCLRI
Sbjct: 1   MALSRKPYSYSKMDKEDPEELIHRRAQFLIYKVLEQAN------------SRRKSSCLRI 60

Query: 63  RTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRRQPKVEALPFPSL 122
           +  KLK++IG+RL++L+K +   +S AR+G+      QL+T K    R+ K   L  PSL
Sbjct: 61  KISKLKVKIGKRLRRLRKKIISSVSAARVGIHGHVVSQLKTWKRLFGRE-KQTLLTIPSL 108

[Close]
BLAST of Cp4.1LG09g08980 vs. TAIR10
Match: AT4G04745.1 (AT4G04745.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.2e-07
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 1 

Query: 1   MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPS-- 60
           M+LM+K     Y++MEKEDP+E  HR+A FLI K++E+A     +     +  RRR S  
Sbjct: 26  MALMVKNSPYEYTKMEKEDPQELIHRRAQFLIQKVLERA-----DSKTRQHQQRRRSSGP 85

Query: 61  CLRIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALP 118
            + IR   +++RIG++L+KL+K  +   +         F++     S+      +  LP
Sbjct: 86  LIMIRVVGIRMRIGKKLRKLRKTNTCICNNLITRFLKSFKRFLCSSSSSSSSRTISDLP 139

[Close]
BLAST of Cp4.1LG09g08980 vs. NCBI nr
Match: gi|659067750|ref|XP_008441119.1| (PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 7.0e-30
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = 1 

Query: 3   LMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRI 62
           LM  RK  GYSRMEKEDP+EK+HRQA FLIYKIMEQASNG+          +RRPSCLRI
Sbjct: 4   LMTVRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQASNGS----------KRRPSCLRI 63

Query: 63  RTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALPFPS 121
           R RK KLRIGRRLKK+KK M+M  STARIG+C+Q  QLR+CKS L  + KVE L FP+
Sbjct: 64  RIRKFKLRIGRRLKKMKKTMAMSFSTARIGICSQLGQLRSCKS-LFGKAKVETLNFPT 110

[Close]
BLAST of Cp4.1LG09g08980 vs. NCBI nr
Match: gi|700209431|gb|KGN64527.1| (hypothetical protein Csa_1G063510 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-29
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 1 

Query: 3   LMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRI 62
           LM  R+  GYS+MEKEDP+EK+HRQA FLIYKIMEQASNG+          +RRPSCLRI
Sbjct: 4   LMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGS----------KRRPSCLRI 63

Query: 63  RTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALPFPS 121
           R RK KLR+GRR KK+KK M+M  STARIG+CNQF QLR+CKS L  + KVE L FP+
Sbjct: 64  RIRKFKLRMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKS-LFGKTKVETLNFPT 110

[Close]
BLAST of Cp4.1LG09g08980 vs. NCBI nr
Match: gi|658020944|ref|XP_008345848.1| (PREDICTED: uncharacterized protein LOC103408808 [Malus domestica])

HSP 1 Score: 96.3 bits (238), Expect = 4.0e-17
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 1 

Query: 1   MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCL 60
           M++ +++    YS+M+KEDPEE  HR+A FLIYK+M+Q               RRRPS L
Sbjct: 1   MAMTIRKSYGAYSKMDKEDPEEANHRRAQFLIYKVMQQVEM------------RRRPSNL 60

Query: 61  RIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRR 110
           RIR RKLKL+IGRRLKKL+K M + +S AR+ +  Q F QL+TCK+   R
Sbjct: 61  RIRVRKLKLKIGRRLKKLRKSMLLSISAARVCVYKQVFNQLKTCKTLFGR 98

[Close]
BLAST of Cp4.1LG09g08980 vs. NCBI nr
Match: gi|694351115|ref|XP_009357442.1| (PREDICTED: uncharacterized protein LOC103948166 [Pyrus x bretschneideri])

HSP 1 Score: 95.5 bits (236), Expect = 6.8e-17
Identity = 53/110 (48.18%), Postives = 76/110 (69.09%), Query Frame = 1 

Query: 1   MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCL 60
           M++M+++   GYS+++KEDPE+  HR+A FLIYK+++QA              RRRPS L
Sbjct: 1   MAVMIRKSYGGYSKLDKEDPEDVNHRRAQFLIYKVLQQAET------------RRRPSNL 60

Query: 61  RIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRR 110
           RIR RKLK++IGRRLKKL+K M + +STAR+ +  + F QL+TC +   R
Sbjct: 61  RIRIRKLKVKIGRRLKKLRKSMLLSISTARVCVYKRVFNQLKTCMTLFGR 98

[Close]
BLAST of Cp4.1LG09g08980 vs. NCBI nr
Match: gi|694310390|ref|XP_009352780.1| (PREDICTED: uncharacterized protein LOC103944097 [Pyrus x bretschneideri])

HSP 1 Score: 95.5 bits (236), Expect = 6.8e-17
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 1 

Query: 1   MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCL 60
           M++ +++    YS+M+KEDPEE  HR+A FLIYK+M+Q               RRRPS L
Sbjct: 1   MAMTIRKSYGAYSKMDKEDPEEVNHRRAQFLIYKVMQQVEM------------RRRPSNL 60

Query: 61  RIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRR 110
           RIR RKLKL+IGRRLKKL+K M + +S AR+ +  Q F QL+TCK+   R
Sbjct: 61  RIRVRKLKLKIGRRLKKLRKSMLLSVSAARVCVYKQVFNQLKTCKTLFGR 98

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g08980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g08980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUT4_CUCSA1.4e-2965.25Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1[more]
M5WJH3_PRUPE8.1e-1748.76Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1[more]
W9RFE3_9ROSA1.5e-1549.02Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1[more]
A0A0A0KJX3_CUCSA1.9e-1342.74Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1[more]
A0A072V4B2_MEDTR3.2e-1342.98Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1[more]
BLAST of Cp4.1LG09g08980 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G04745.15.2e-0731.93 unknown protein[more]
BLAST of Cp4.1LG09g08980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659067750|ref|XP_008441119.1|7.0e-3066.95PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo][more]
gi|700209431|gb|KGN64527.1|2.1e-2965.25hypothetical protein Csa_1G063510 [Cucumis sativus][more]
gi|658020944|ref|XP_008345848.1|4.0e-1750.00PREDICTED: uncharacterized protein LOC103408808 [Malus domestica][more]
gi|694351115|ref|XP_009357442.1|6.8e-1748.18PREDICTED: uncharacterized protein LOC103948166 [Pyrus x bretschneideri][more]
gi|694310390|ref|XP_009352780.1|6.8e-1750.00PREDICTED: uncharacterized protein LOC103944097 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g08980.1Cp4.1LG09g08980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35687FAMILY NOT NAMEDcoord: 1..102
score: 9.6
NoneNo IPR availablePANTHERPTHR35687:SF1SUBFAMILY NOT NAMEDcoord: 1..102
score: 9.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g08980Cucsa.045290Cucumber (Gy14) v1cgycpeB0031
Cp4.1LG09g08980Cucsa.085890Cucumber (Gy14) v1cgycpeB0156
Cp4.1LG09g08980CmaCh13G007350Cucurbita maxima (Rimu)cmacpeB212
Cp4.1LG09g08980CmaCh18G002520Cucurbita maxima (Rimu)cmacpeB414
Cp4.1LG09g08980CmoCh13G007640Cucurbita moschata (Rifu)cmocpeB182
Cp4.1LG09g08980Cla019387Watermelon (97103) v1cpewmB025
Cp4.1LG09g08980Csa1G063510Cucumber (Chinese Long) v2cpecuB029
Cp4.1LG09g08980Csa6G514800Cucumber (Chinese Long) v2cpecuB052
Cp4.1LG09g08980MELO3C007384Melon (DHL92) v3.5.1cpemeB045
Cp4.1LG09g08980MELO3C002462Melon (DHL92) v3.5.1cpemeB026
Cp4.1LG09g08980CSPI01G10760Wild cucumber (PI 183967)cpecpiB025
Cp4.1LG09g08980CSPI06G33630Wild cucumber (PI 183967)cpecpiB047
Cp4.1LG09g08980Lsi01G004190Bottle gourd (USVL1VR-Ls)cpelsiB022
Cp4.1LG09g08980MELO3C002462.2Melon (DHL92) v3.6.1cpemedB031
Cp4.1LG09g08980CsaV3_1G010830Cucumber (Chinese Long) v3cpecucB0031
Cp4.1LG09g08980CsaV3_6G049110Cucumber (Chinese Long) v3cpecucB0054
Cp4.1LG09g08980Bhi08G001515Wax gourdcpewgoB0047
Cp4.1LG09g08980Carg06852Silver-seed gourdcarcpeB0694
Cp4.1LG09g08980Carg07543Silver-seed gourdcarcpeB1395
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g08980Cp4.1LG20g03770Cucurbita pepo (Zucchini)cpecpeB048
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g08980Cucurbita pepo (Zucchini)cpecpeB019
Cp4.1LG09g08980Cucurbita pepo (Zucchini)cpecpeB044
Cp4.1LG09g08980Cucurbita pepo (Zucchini)cpecpeB050
Cp4.1LG09g08980Cucurbita maxima (Rimu)cmacpeB652
Cp4.1LG09g08980Cucurbita maxima (Rimu)cmacpeB859
Cp4.1LG09g08980Cucurbita moschata (Rifu)cmocpeB377
Cp4.1LG09g08980Cucurbita moschata (Rifu)cmocpeB602
Cp4.1LG09g08980Cucurbita moschata (Rifu)cmocpeB799
Cp4.1LG09g08980Bottle gourd (USVL1VR-Ls)cpelsiB026
Cp4.1LG09g08980Watermelon (Charleston Gray)cpewcgB031
Cp4.1LG09g08980Watermelon (Charleston Gray)cpewcgB036
Cp4.1LG09g08980Watermelon (97103) v1cpewmB043
Cp4.1LG09g08980Cucumber (Gy14) v2cgybcpeB018
Cp4.1LG09g08980Cucumber (Gy14) v2cgybcpeB707
Cp4.1LG09g08980Melon (DHL92) v3.6.1cpemedB053
Cp4.1LG09g08980Silver-seed gourdcarcpeB0911
Cp4.1LG09g08980Silver-seed gourdcarcpeB1218
Cp4.1LG09g08980Silver-seed gourdcarcpeB1287
Cp4.1LG09g08980Wax gourdcpewgoB0033
Cp4.1LG09g08980Wax gourdcpewgoB0041