Cp4.1LG20g03770 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g03770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAt4g04745
LocationCp4.1LG20 : 2071277 .. 2071615 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGGTTAGTGACAAGGAGGCAAAATGGGTACTCAAGGATGGAGAAGGAAGACCCAGAAGAGAAAAAGCACAGGCAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAACAGTGGCAGTAGGAGGAGATCTTCGTGTCTCAGAATCAGAATAAGGAAGTTTAAGCTAAGGATTGGGAGGAGGTTGAAGAAGCTGAAGAAGACGATGTCAATGGGGTTTTGTACTGCAAGAAATGGGATCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAGAGCTTGTTTGGACGAGCTAAGGAGGAAGCTTTGACCTTTCCTTCTTTGGTTTCTTGA

mRNA sequence

ATGAGTGGGTTAGTGACAAGGAGGCAAAATGGGTACTCAAGGATGGAGAAGGAAGACCCAGAAGAGAAAAAGCACAGGCAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAACAGTGGCAGTAGGAGGAGATCTTCGTGTCTCAGAATCAGAATAAGGAAGTTTAAGCTAAGGATTGGGAGGAGGTTGAAGAAGCTGAAGAAGACGATGTCAATGGGGTTTTGTACTGCAAGAAATGGGATCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAGAGCTTGTTTGGACGAGCTAAGGAGGAAGCTTTGACCTTTCCTTCTTTGGTTTCTTGA

Coding sequence (CDS)

ATGAGTGGGTTAGTGACAAGGAGGCAAAATGGGTACTCAAGGATGGAGAAGGAAGACCCAGAAGAGAAAAAGCACAGGCAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAACAGTGGCAGTAGGAGGAGATCTTCGTGTCTCAGAATCAGAATAAGGAAGTTTAAGCTAAGGATTGGGAGGAGGTTGAAGAAGCTGAAGAAGACGATGTCAATGGGGTTTTGTACTGCAAGAAATGGGATCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAGAGCTTGTTTGGACGAGCTAAGGAGGAAGCTTTGACCTTTCCTTCTTTGGTTTCTTGA

Protein sequence

MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLRIGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRAKEEALTFPSLVS
Homology
[Close]
BLAST of Cp4.1LG20g03770 vs. TrEMBL
Match: A0A0A0LUT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-37
Identity = 84/110 (76.36%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MSGLVT-RRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKL 60
           MS L+T RR  GYS+MEKEDP+EKKHRQAQFLIYKIMEQA++GS+RR SCLRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRAKEEALTFPS 110
           R+GRR KK+KKTM+M F TAR GIC QFGQLR+CKSLFG+ K E L FP+
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]
BLAST of Cp4.1LG20g03770 vs. TrEMBL
Match: W9RFE3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-20
Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 1 

Query: 4  LVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLRIGR 63
          LV R+ N YS+++KEDPEE+  R+AQFLIYK+MEQA+S SRRR S LRIRIRK K++IG+
Sbjct: 3  LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMSRRRPSYLRIRIRKLKVKIGK 62

Query: 64 RLKKLKKTMSMGFCTARNGICKQF-GQLRTCKSLFG 99
          RL KL+K+M +    A+  +CKQ   Q +TC+ LFG
Sbjct: 63 RLTKLRKSMLLSISAAKVSVCKQVCSQFKTCRRLFG 98

[Close]
BLAST of Cp4.1LG20g03770 vs. TrEMBL
Match: A0A072V4B2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 1 

Query: 5   VTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLRIGRR 64
           ++R+   YS+M+KEDPEE  HR+AQFLIYK++EQAN  SRR+SSCLRI+I K K++IG+R
Sbjct: 3   LSRKPYSYSKMDKEDPEELIHRRAQFLIYKVLEQAN--SRRKSSCLRIKISKLKVKIGKR 62

Query: 65  LKKLKKTMSMGFCTARNGICKQ-FGQLRTCKSLFGRAKEEALTFPSLV 112
           L++L+K +      AR GI      QL+T K LFGR K+  LT PSL+
Sbjct: 63  LRRLRKKIISSVSAARVGIHGHVVSQLKTWKRLFGREKQTLLTIPSLM 108

[Close]
BLAST of Cp4.1LG20g03770 vs. TrEMBL
Match: M5WJH3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-18
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 1 

Query: 4   LVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLRIGR 63
           ++ R+   YS+M+KEDPEE  HR+AQFLIYK+++QA   +RRR   LRIRIRK KL+IGR
Sbjct: 3   VMIRKPYAYSKMDKEDPEEVIHRRAQFLIYKVLQQAE--TRRRPVNLRIRIRKLKLKIGR 62

Query: 64  RLKKLKKTMSMGFCTARNGICKQ-FGQLRTCKSLFGRAK 102
           RLKKL+K+M +    AR  + KQ F QL+TCK+LFGR +
Sbjct: 63  RLKKLRKSMLLSISAARVCVYKQVFSQLKTCKTLFGRGE 99

[Close]
BLAST of Cp4.1LG20g03770 vs. TrEMBL
Match: A0A0A0KJX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-18
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1 

Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60
           MS ++T+R NGY +++KEDPEE  HR+AQFLI K++E+A+S  +   S LRIRIR+ K+R
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGK--PSYLRIRIRRLKVR 60

Query: 61  IGRRLKKLKKTMSMGFCTARNGICKQ-FGQLRTCKSLFGRAKEEALTFPSLVS 113
            GRRLK+LKK+      T + G+ KQ   Q+R CKSLFGR +     FP L+S
Sbjct: 61  FGRRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLS 111

[Close]
BLAST of Cp4.1LG20g03770 vs. TAIR10
Match: AT4G04745.1 (AT4G04745.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 5.1e-09
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 1 

Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGS-----RRRSS--CLRIR 60
           M+ +V      Y++MEKEDP+E  HR+AQFLI K++E+A+S +     RRRSS   + IR
Sbjct: 26  MALMVKNSPYEYTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIR 85

Query: 61  IRKFKLRIGRRLKKLKKT 72
           +   ++RIG++L+KL+KT
Sbjct: 86  VVGIRMRIGKKLRKLRKT 103

[Close]
BLAST of Cp4.1LG20g03770 vs. TAIR10
Match: AT1G11655.1 (AT1G11655.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 5.6e-08
Identity = 30/63 (47.62%), Postives = 49/63 (77.78%), Query Frame = 1 

Query: 12 YSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRR--RSSCLRIRIRKFKLRIGRRLKKLK 71
          YS+M+KEDPEE   R+A+FLIYK +++A+  SRR   SS +R+++   K++IG+RL KL+
Sbjct: 10 YSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVKIGKRLAKLR 69

Query: 72 KTM 73
          +++
Sbjct: 70 RSV 72

[Close]
BLAST of Cp4.1LG20g03770 vs. NCBI nr
Match: gi|659067750|ref|XP_008441119.1| (PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 8.4e-38
Identity = 82/106 (77.36%), Postives = 93/106 (87.74%), Query Frame = 1 

Query: 4   LVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLRIGR 63
           +  R+  GYSRMEKEDP+EKKHRQAQFLIYKIMEQA++GS+RR SCLRIRIRKFKLRIGR
Sbjct: 5   MTVRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKLRIGR 64

Query: 64  RLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRAKEEALTFPS 110
           RLKK+KKTM+M F TAR GIC Q GQLR+CKSLFG+AK E L FP+
Sbjct: 65  RLKKMKKTMAMSFSTARIGICSQLGQLRSCKSLFGKAKVETLNFPT 110

[Close]
BLAST of Cp4.1LG20g03770 vs. NCBI nr
Match: gi|700209431|gb|KGN64527.1| (hypothetical protein Csa_1G063510 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-37
Identity = 84/110 (76.36%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 1   MSGLVT-RRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKL 60
           MS L+T RR  GYS+MEKEDP+EKKHRQAQFLIYKIMEQA++GS+RR SCLRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRAKEEALTFPS 110
           R+GRR KK+KKTM+M F TAR GIC QFGQLR+CKSLFG+ K E L FP+
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]
BLAST of Cp4.1LG20g03770 vs. NCBI nr
Match: gi|703087469|ref|XP_010093280.1| (hypothetical protein L484_006294 [Morus notabilis])

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-20
Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 1 

Query: 4  LVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLRIGR 63
          LV R+ N YS+++KEDPEE+  R+AQFLIYK+MEQA+S SRRR S LRIRIRK K++IG+
Sbjct: 3  LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMSRRRPSYLRIRIRKLKVKIGK 62

Query: 64 RLKKLKKTMSMGFCTARNGICKQF-GQLRTCKSLFG 99
          RL KL+K+M +    A+  +CKQ   Q +TC+ LFG
Sbjct: 63 RLTKLRKSMLLSISAAKVSVCKQVCSQFKTCRRLFG 98

[Close]
BLAST of Cp4.1LG20g03770 vs. NCBI nr
Match: gi|658020944|ref|XP_008345848.1| (PREDICTED: uncharacterized protein LOC103408808 [Malus domestica])

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-19
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 1 

Query: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60
           M+  + +    YS+M+KEDPEE  HR+AQFLIYK+M+Q     RRR S LRIR+RK KL+
Sbjct: 1   MAMTIRKSYGAYSKMDKEDPEEANHRRAQFLIYKVMQQVE--MRRRPSNLRIRVRKLKLK 60

Query: 61  IGRRLKKLKKTMSMGFCTARNGICKQ-FGQLRTCKSLFGRAKEEAL--TFPSL 111
           IGRRLKKL+K+M +    AR  + KQ F QL+TCK+LFGR  +  +  T P+L
Sbjct: 61  IGRRLKKLRKSMLLSISAARVCVYKQVFNQLKTCKTLFGRGDQGNINATLPAL 111

[Close]
BLAST of Cp4.1LG20g03770 vs. NCBI nr
Match: gi|922388548|ref|XP_013462804.1| (hypothetical protein MTR_2g022960 [Medicago truncatula])

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 1 

Query: 5   VTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLRIGRR 64
           ++R+   YS+M+KEDPEE  HR+AQFLIYK++EQAN  SRR+SSCLRI+I K K++IG+R
Sbjct: 3   LSRKPYSYSKMDKEDPEELIHRRAQFLIYKVLEQAN--SRRKSSCLRIKISKLKVKIGKR 62

Query: 65  LKKLKKTMSMGFCTARNGICKQ-FGQLRTCKSLFGRAKEEALTFPSLV 112
           L++L+K +      AR GI      QL+T K LFGR K+  LT PSL+
Sbjct: 63  LRRLRKKIISSVSAARVGIHGHVVSQLKTWKRLFGREKQTLLTIPSLM 108

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g03770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g03770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUT4_CUCSA2.2e-3776.36Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1[more]
W9RFE3_9ROSA1.4e-2058.33Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1[more]
A0A072V4B2_MEDTR2.1e-1954.63Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1[more]
M5WJH3_PRUPE1.3e-1857.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1[more]
A0A0A0KJX3_CUCSA1.3e-1851.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1[more]
BLAST of Cp4.1LG20g03770 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G04745.15.1e-0946.15 unknown protein[more]
AT1G11655.15.6e-0847.62 unknown protein[more]
BLAST of Cp4.1LG20g03770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659067750|ref|XP_008441119.1|8.4e-3877.36PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo][more]
gi|700209431|gb|KGN64527.1|3.2e-3776.36hypothetical protein Csa_1G063510 [Cucumis sativus][more]
gi|703087469|ref|XP_010093280.1|2.1e-2058.33hypothetical protein L484_006294 [Morus notabilis][more]
gi|658020944|ref|XP_008345848.1|2.3e-1953.10PREDICTED: uncharacterized protein LOC103408808 [Malus domestica][more]
gi|922388548|ref|XP_013462804.1|3.0e-1954.63hypothetical protein MTR_2g022960 [Medicago truncatula][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g03770.1Cp4.1LG20g03770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35687FAMILY NOT NAMEDcoord: 1..98
score: 1.5
NoneNo IPR availablePANTHERPTHR35687:SF1SUBFAMILY NOT NAMEDcoord: 1..98
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g03770Cucsa.045290Cucumber (Gy14) v1cgycpeB0040
Cp4.1LG20g03770Cucsa.085890Cucumber (Gy14) v1cgycpeB0159
Cp4.1LG20g03770CmaCh13G007350Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g03770CmaCh18G002520Cucurbita maxima (Rimu)cmacpeB442
Cp4.1LG20g03770CmaCh07G003060Cucurbita maxima (Rimu)cmacpeB881
Cp4.1LG20g03770CmoCh13G007640Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g03770Cla019387Watermelon (97103) v1cpewmB503
Cp4.1LG20g03770Cla014458Watermelon (97103) v1cpewmB513
Cp4.1LG20g03770Csa1G063510Cucumber (Chinese Long) v2cpecuB506
Cp4.1LG20g03770Csa6G514800Cucumber (Chinese Long) v2cpecuB525
Cp4.1LG20g03770MELO3C007384Melon (DHL92) v3.5.1cpemeB485
Cp4.1LG20g03770MELO3C002462Melon (DHL92) v3.5.1cpemeB477
Cp4.1LG20g03770ClCG03G004790Watermelon (Charleston Gray)cpewcgB463
Cp4.1LG20g03770ClCG01G022050Watermelon (Charleston Gray)cpewcgB450
Cp4.1LG20g03770CSPI06G33630Wild cucumber (PI 183967)cpecpiB527
Cp4.1LG20g03770CSPI01G10760Wild cucumber (PI 183967)cpecpiB506
Cp4.1LG20g03770Lsi01G004190Bottle gourd (USVL1VR-Ls)cpelsiB415
Cp4.1LG20g03770MELO3C002462.2Melon (DHL92) v3.6.1cpemedB559
Cp4.1LG20g03770CsaV3_1G010830Cucumber (Chinese Long) v3cpecucB0624
Cp4.1LG20g03770CsaV3_6G049110Cucumber (Chinese Long) v3cpecucB0650
Cp4.1LG20g03770Bhi08G001515Wax gourdcpewgoB0637
Cp4.1LG20g03770Bhi03G000437Wax gourdcpewgoB0632
Cp4.1LG20g03770Carg07835Silver-seed gourdcarcpeB0916
Cp4.1LG20g03770Carg06852Silver-seed gourdcarcpeB0697
Cp4.1LG20g03770Carg07543Silver-seed gourdcarcpeB1401
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g03770Cp4.1LG09g08980Cucurbita pepo (Zucchini)cpecpeB048
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g03770Cucurbita pepo (Zucchini)cpecpeB086
Cp4.1LG20g03770Cucurbita pepo (Zucchini)cpecpeB412
Cp4.1LG20g03770Cucurbita pepo (Zucchini)cpecpeB437
Cp4.1LG20g03770Cucurbita pepo (Zucchini)cpecpeB445
Cp4.1LG20g03770Cucurbita maxima (Rimu)cmacpeB677
Cp4.1LG20g03770Cucurbita moschata (Rifu)cmocpeB403
Cp4.1LG20g03770Cucurbita moschata (Rifu)cmocpeB443
Cp4.1LG20g03770Cucurbita moschata (Rifu)cmocpeB631
Cp4.1LG20g03770Cucurbita moschata (Rifu)cmocpeB818
Cp4.1LG20g03770Cucumber (Chinese Long) v2cpecuB526
Cp4.1LG20g03770Bottle gourd (USVL1VR-Ls)cpelsiB417
Cp4.1LG20g03770Cucumber (Gy14) v2cgybcpeB070
Cp4.1LG20g03770Cucumber (Gy14) v2cgybcpeB814
Cp4.1LG20g03770Melon (DHL92) v3.6.1cpemedB573
Cp4.1LG20g03770Silver-seed gourdcarcpeB1222
Cp4.1LG20g03770Silver-seed gourdcarcpeB1291
Cp4.1LG20g03770Wax gourdcpewgoB0655