Cla014458 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014458
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 30893932 .. 30894270 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTTGTTCACATTAGGAGGCCAAATGGTTACTCCAAGGTTGATAAAGAAGATCCAGAAGAGATAATTCATCGAAGAGCACAGTTTCTAATCAACAAAGTGTTGGAACGAGCAGATTCCATGGGGAAACCTTCGTATTTGAGAATTAGAATTCGGAGGCTGAAGATTAGATTTGGGAGAAGATTGAAGAAGCTAAAGAAGAGTGCAATGGCAAGTATTTCAACTCTCAAGATTGGTGTTTACAAGCAAGTCGTTTCTCAGATCAGAAATTGCAAGTCTTTGTTTGGCCGAAAACAAACTAACTTTCCCGATTTTCCTCTTTTGTTATCATCTTGA

mRNA sequence

ATGAGTTTTGTTCACATTAGGAGGCCAAATGGTTACTCCAAGGTTGATAAAGAAGATCCAGAAGAGATAATTCATCGAAGAGCACAGTTTCTAATCAACAAAGTGTTGGAACGAGCAGATTCCATGGGGAAACCTTCGTATTTGAGAATTAGAATTCGGAGGCTGAAGATTAGATTTGGGAGAAGATTGAAGAAGCTAAAGAAGAGTGCAATGGCAAGTATTTCAACTCTCAAGATTGGTGTTTACAAGCAAGTCGTTTCTCAGATCAGAAATTGCAAGTCTTTGTTTGGCCGAAAACAAACTAACTTTCCCGATTTTCCTCTTTTGTTATCATCTTGA

Coding sequence (CDS)

ATGAGTTTTGTTCACATTAGGAGGCCAAATGGTTACTCCAAGGTTGATAAAGAAGATCCAGAAGAGATAATTCATCGAAGAGCACAGTTTCTAATCAACAAAGTGTTGGAACGAGCAGATTCCATGGGGAAACCTTCGTATTTGAGAATTAGAATTCGGAGGCTGAAGATTAGATTTGGGAGAAGATTGAAGAAGCTAAAGAAGAGTGCAATGGCAAGTATTTCAACTCTCAAGATTGGTGTTTACAAGCAAGTCGTTTCTCAGATCAGAAATTGCAAGTCTTTGTTTGGCCGAAAACAAACTAACTTTCCCGATTTTCCTCTTTTGTTATCATCTTGA

Protein sequence

MSFVHIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFGRRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPDFPLLLSS

Homology

[Close]

BLAST of Cla014458 vs. TrEMBL
Match: A0A0A0KJX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-47
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MSFVHIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFG 60
           MS V  +R NGY KVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLK+RFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPDFPLLLSS 113
           RRLK+LKKSAM SISTLKIGVYKQV++QIRNCKSLFGRKQTNF +FP+LLSS
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 112

[Close]

BLAST of Cla014458 vs. TrEMBL
Match: A0A0D2QI53_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G178000 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.5e-28
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 4  VHIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFGRRL 63
          V +RR NGYSKVDKEDPEEIIHRRAQFLI+KVLERAD   KPS+LRIR+ RLK++ GRRL
Sbjct: 2  VILRRSNGYSKVDKEDPEEIIHRRAQFLIHKVLERADCRRKPSFLRIRLCRLKVKIGRRL 61

Query: 64 KKLKKSAMASISTLKIGVYKQVVSQIRNCKSLF 97
          KKL+KSA+ SIS  + GVYKQV+ Q++  + LF
Sbjct: 62 KKLRKSALVSISAARTGVYKQVMDQLKTWRRLF 94

[Close]

BLAST of Cla014458 vs. TrEMBL
Match: M5WJH3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 61/95 (64.21%), Postives = 79/95 (83.16%), Query Frame = 1


Query: 4  VHIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFGRRL 63
          V IR+P  YSK+DKEDPEE+IHRRAQFLI KVL++A++  +P  LRIRIR+LK++ GRRL
Sbjct: 3  VMIRKPYAYSKMDKEDPEEVIHRRAQFLIYKVLQQAETRRRPVNLRIRIRKLKLKIGRRL 62

Query: 64 KKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGR 99
          KKL+KS + SIS  ++ VYKQV SQ++ CK+LFGR
Sbjct: 63 KKLRKSMLLSISAARVCVYKQVFSQLKTCKTLFGR 97

[Close]

BLAST of Cla014458 vs. TrEMBL
Match: A0A061GFQ7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030210 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-25
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 1


Query: 5  HIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFGRRLK 64
          ++RR   YSKVDKEDPEEIIHRRAQFLI KVLE+ADS  KPS+LRIR+ RLK++ GRRLK
Sbjct: 3  NLRRSYAYSKVDKEDPEEIIHRRAQFLIYKVLEQADSKRKPSFLRIRLCRLKVKIGRRLK 62

Query: 65 KLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGR 99
          KL+K A+ SIS  + G YKQV+ Q++  + LF R
Sbjct: 63 KLRKCALVSISAARGGAYKQVIDQLKTWRRLFSR 96

[Close]

BLAST of Cla014458 vs. TrEMBL
Match: A5BEJ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g01900 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.6e-25
Identity = 57/96 (59.38%), Postives = 77/96 (80.21%), Query Frame = 1


Query: 6   IRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFGRRLKK 65
           +RRP GYSK++KEDPEE IHRRAQFLI KV+E+ADS  K S+LR+RI RL+++ GRRLK+
Sbjct: 4   VRRPYGYSKMEKEDPEEAIHRRAQFLIYKVMEKADSRRKASFLRLRICRLRVKIGRRLKR 63

Query: 66  LKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQT 102
            +KS M S++  K+GVY+QV+SQ++  K L G  +T
Sbjct: 64  FRKSMMLSVTAAKVGVYRQVLSQLKAWKRLLGGGET 99

[Close]

BLAST of Cla014458 vs. NCBI nr
Match: gi|778720450|ref|XP_011658155.1| (PREDICTED: uncharacterized protein LOC105435949 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 3.4e-47
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MSFVHIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFG 60
           MS V  +R NGY KVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLK+RFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPDFPLLLSS 113
           RRLK+LKKSAM SISTLKIGVYKQV++QIRNCKSLFGRKQTNF +FP+LLSS
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 112

[Close]

BLAST of Cla014458 vs. NCBI nr
Match: gi|659078924|ref|XP_008439979.1| (PREDICTED: uncharacterized protein LOC103484604 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 2.9e-46
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   MSFVHIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFG 60
           MSFV  +RPNGY KVDKEDPEEII RRAQFLINKVLERADSMGKPSYLRIRIRRLK+RFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPDFPLLLSS 113
           +RLKKLKKSAMASISTLK+GVYKQV++QIRN KSLFGRKQT F +FP+LLSS
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLLSS 112

[Close]

BLAST of Cla014458 vs. NCBI nr
Match: gi|823230653|ref|XP_012448049.1| (PREDICTED: uncharacterized protein LOC105771183 [Gossypium raimondii])

HSP 1 Score: 131.7 bits (330), Expect = 7.8e-28
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 4  VHIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFGRRL 63
          V +RR NGYSKVDKEDPEEIIHRRAQFLI+KVLERAD   KPS+LRIR+ RLK++ GRRL
Sbjct: 2  VILRRSNGYSKVDKEDPEEIIHRRAQFLIHKVLERADCRRKPSFLRIRLCRLKVKIGRRL 61

Query: 64 KKLKKSAMASISTLKIGVYKQVVSQIRNCKSLF 97
          KKL+KSA+ SIS  + GVYKQV+ Q++  + LF
Sbjct: 62 KKLRKSALVSISAARTGVYKQVMDQLKTWRRLF 94

[Close]

BLAST of Cla014458 vs. NCBI nr
Match: gi|764549646|ref|XP_004293283.2| (PREDICTED: uncharacterized protein LOC101291313 [Fragaria vesca subsp. vesca])

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-27
Identity = 61/105 (58.10%), Postives = 82/105 (78.10%), Query Frame = 1


Query: 2   SFVHIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFGR 61
           S   +R+ NGYSK+DKEDPEE+IHRRA+FL+ KV+++A+   +PS LRIRIR+LK++FG 
Sbjct: 52  SMAGVRKRNGYSKIDKEDPEEVIHRRARFLVYKVMQQAEYRRRPSNLRIRIRKLKVKFGM 111

Query: 62  RLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPDF 107
           RLKKL+KS + SIS  ++ VYKQV  Q++ CKSLFGR +   P F
Sbjct: 112 RLKKLRKSMLLSISAARVVVYKQVSRQLKTCKSLFGRVEEPLPAF 156

[Close]

BLAST of Cla014458 vs. NCBI nr
Match: gi|595882861|ref|XP_007212680.1| (hypothetical protein PRUPE_ppa018445mg [Prunus persica])

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 61/95 (64.21%), Postives = 79/95 (83.16%), Query Frame = 1


Query: 4  VHIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKIRFGRRL 63
          V IR+P  YSK+DKEDPEE+IHRRAQFLI KVL++A++  +P  LRIRIR+LK++ GRRL
Sbjct: 3  VMIRKPYAYSKMDKEDPEEVIHRRAQFLIYKVLQQAETRRRPVNLRIRIRKLKLKIGRRL 62

Query: 64 KKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGR 99
          KKL+KS + SIS  ++ VYKQV SQ++ CK+LFGR
Sbjct: 63 KKLRKSMLLSISAARVCVYKQVFSQLKTCKTLFGR 97

The following BLAST results are available for this feature:

BLAST of Cla014458 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJX3_CUCSA	2.4e-47	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1	[more]
A0A0D2QI53_GOSRA	5.5e-28	69.89	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G178000 PE=4 SV=1	[more]
M5WJH3_PRUPE	1.3e-26	64.21	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1	[more]
A0A061GFQ7_THECC	1.5e-25	64.89	Uncharacterized protein OS=Theobroma cacao GN=TCM_030210 PE=4 SV=1	[more]
A5BEJ3_VITVI	9.6e-25	59.38	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g01900 PE=4 SV=...	[more]

BLAST of Cla014458 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778720450\|ref\|XP_011658155.1\|	3.4e-47	87.50	PREDICTED: uncharacterized protein LOC105435949 [Cucumis sativus]	[more]
gi\|659078924\|ref\|XP_008439979.1\|	2.9e-46	86.61	PREDICTED: uncharacterized protein LOC103484604 [Cucumis melo]	[more]
gi\|823230653\|ref\|XP_012448049.1\|	7.8e-28	69.89	PREDICTED: uncharacterized protein LOC105771183 [Gossypium raimondii]	[more]
gi\|764549646\|ref\|XP_004293283.2\|	2.3e-27	58.10	PREDICTED: uncharacterized protein LOC101291313 [Fragaria vesca subsp. vesca]	[more]
gi\|595882861\|ref\|XP_007212680.1\|	1.9e-26	64.21	hypothetical protein PRUPE_ppa018445mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014458	Cla014458.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35687	FAMILY NOT NAMED	coord: 1..108 score: 4.3
None	No IPR available	PANTHER	PTHR35687:SF1	SUBFAMILY NOT NAMED	coord: 1..108 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla014458	Cla97C03G055940	Watermelon (97103) v2	wmwmbB260
Cla014458	Cla97C01G021690	Watermelon (97103) v2	wmwmbB234
Cla014458	Csa6G514800	Cucumber (Chinese Long) v2	cuwmB500
Cla014458	Csa1G063510	Cucumber (Chinese Long) v2	cuwmB043
Cla014458	MELO3C002462	Melon (DHL92) v3.5.1	mewmB167
Cla014458	MELO3C007384	Melon (DHL92) v3.5.1	mewmB572
Cla014458	ClCG03G004790	Watermelon (Charleston Gray)	wcgwmB237
Cla014458	ClCG01G022050	Watermelon (Charleston Gray)	wcgwmB141
Cla014458	CSPI01G10760	Wild cucumber (PI 183967)	cpiwmB043
Cla014458	CSPI06G33630	Wild cucumber (PI 183967)	cpiwmB519
Cla014458	Cucsa.085890	Cucumber (Gy14) v1	cgywmB098
Cla014458	Cucsa.045290	Cucumber (Gy14) v1	cgywmB026
Cla014458	CmaCh13G007350	Cucurbita maxima (Rimu)	cmawmB201
Cla014458	CmaCh07G003060	Cucurbita maxima (Rimu)	cmawmB826
Cla014458	CmoCh13G007640	Cucurbita moschata (Rifu)	cmowmB188
Cla014458	CmoCh07G002950	Cucurbita moschata (Rifu)	cmowmB816
Cla014458	Lsi01G004190	Bottle gourd (USVL1VR-Ls)	lsiwmB144
Cla014458	Cp4.1LG19g07860	Cucurbita pepo (Zucchini)	cpewmB482
Cla014458	Cp4.1LG20g03770	Cucurbita pepo (Zucchini)	cpewmB513
Cla014458	MELO3C007384.2	Melon (DHL92) v3.6.1	medwmB561
Cla014458	MELO3C002462.2	Melon (DHL92) v3.6.1	medwmB164
Cla014458	Carg07543	Silver-seed gourd	carwmB1007
Cla014458	Carg07835	Silver-seed gourd	carwmB0642
Cla014458	Carg06852	Silver-seed gourd	carwmB0491
Cla014458	CsaV3_6G049110	Cucumber (Chinese Long) v3	cucwmB526
Cla014458	CsaV3_1G010830	Cucumber (Chinese Long) v3	cucwmB050
Cla014458	Bhi03G000437	Wax gourd	wgowmB432
Cla014458	Bhi08G001515	Wax gourd	wgowmB502

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla014458	Cla019387	Watermelon (97103) v1	wmwmB082

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014458	Watermelon (97103) v1	wmwmB144
Cla014458	Cucumber (Gy14) v1	cgywmB071
Cla014458	Cucumber (Gy14) v1	cgywmB259
Cla014458	Cucurbita maxima (Rimu)	cmawmB578
Cla014458	Cucurbita maxima (Rimu)	cmawmB632
Cla014458	Cucurbita moschata (Rifu)	cmowmB374
Cla014458	Cucurbita moschata (Rifu)	cmowmB491
Cla014458	Cucurbita moschata (Rifu)	cmowmB573
Cla014458	Cucurbita moschata (Rifu)	cmowmB623
Cla014458	Melon (DHL92) v3.5.1	mewmB103
Cla014458	Melon (DHL92) v3.5.1	mewmB238
Cla014458	Watermelon (Charleston Gray)	wcgwmB194
Cla014458	Cucumber (Chinese Long) v2	cuwmB134
Cla014458	Cucumber (Chinese Long) v2	cuwmB593
Cla014458	Cucurbita pepo (Zucchini)	cpewmB043
Cla014458	Cucurbita pepo (Zucchini)	cpewmB073
Cla014458	Bottle gourd (USVL1VR-Ls)	lsiwmB099
Cla014458	Bottle gourd (USVL1VR-Ls)	lsiwmB204
Cla014458	Cucumber (Gy14) v2	cgybwmB044
Cla014458	Cucumber (Gy14) v2	cgybwmB468
Cla014458	Melon (DHL92) v3.6.1	medwmB230
Cla014458	Silver-seed gourd	carwmB0029
Cla014458	Silver-seed gourd	carwmB0879
Cla014458	Silver-seed gourd	carwmB0931
Cla014458	Cucumber (Chinese Long) v3	cucwmB145
Cla014458	Cucumber (Chinese Long) v3	cucwmB623
Cla014458	Wax gourd	wgowmB374