CmoCh07G002950 (gene) Cucurbita moschata (Rifu)

NameCmoCh07G002950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBnaC01g13320D protein
LocationCmo_Chr07 : 1438185 .. 1438508 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTGTTCTTGTTAAGAGGTCTAATGGTTACTCCAAGGTTGATAAAGAAGACCCAGATGAGATAATTCATCGAAGAGCACAGTTTATAATCAACAGAGTGTTGGAACGAGCAGATTCCATGGGCAAAGCTTCGTATCTGAGAATTAGAATCCGAAGACTAAGAGTTAGATTTGGAAGAAGATTGAAGAAGCTGAAGAAGAGTATTTGCAATGTCAAGATTAGTGTTTACAAGCAAATAATCTGTCAGATCAGAAACTGCAAGTCTTTGTTTGGCAGAAAAGCAACCAACTTCGCCAATCTACCTCCTCTCTTACCATAA

mRNA sequence

ATGAGTTTTGTTCTTGTTAAGAGGTCTAATGGTTACTCCAAGGTTGATAAAGAAGACCCAGATGAGATAATTCATCGAAGAGCACAGTTTATAATCAACAGAGTGTTGGAACGAGCAGATTCCATGGGCAAAGCTTCGTATCTGAGAATTAGAATCCGAAGACTAAGAGTTAGATTTGGAAGAAGATTGAAGAAGCTGAAGAAGAGTATTTGCAATGTCAAGATTAGTGTTTACAAGCAAATAATCTGTCAGATCAGAAACTGCAAGTCTTTGTTTGGCAGAAAAGCAACCAACTTCGCCAATCTACCTCCTCTCTTACCATAA

Coding sequence (CDS)

ATGAGTTTTGTTCTTGTTAAGAGGTCTAATGGTTACTCCAAGGTTGATAAAGAAGACCCAGATGAGATAATTCATCGAAGAGCACAGTTTATAATCAACAGAGTGTTGGAACGAGCAGATTCCATGGGCAAAGCTTCGTATCTGAGAATTAGAATCCGAAGACTAAGAGTTAGATTTGGAAGAAGATTGAAGAAGCTGAAGAAGAGTATTTGCAATGTCAAGATTAGTGTTTACAAGCAAATAATCTGTCAGATCAGAAACTGCAAGTCTTTGTTTGGCAGAAAAGCAACCAACTTCGCCAATCTACCTCCTCTCTTACCATAA
BLAST of CmoCh07G002950 vs. TrEMBL
Match: A0A0A0KJX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-39
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 1

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MS VL KRSNGY KVDKEDP+EIIHRRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLK+LKK    SI  +KI VYKQ+I QIRNCKSLFGRK TNFAN P LL
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLL 110

BLAST of CmoCh07G002950 vs. TrEMBL
Match: A0A0D2QI53_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G178000 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-21
Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = 1

Query: 4   VLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFGRRL 63
           V+++RSNGYSKVDKEDP+EIIHRRAQF+I++VLERAD   K S+LRIR+ RL+V+ GRRL
Sbjct: 2   VILRRSNGYSKVDKEDPEEIIHRRAQFLIHKVLERADCRRKPSFLRIRLCRLKVKIGRRL 61

Query: 64  KKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATN--FANLP-PLL 107
           KKL+K    SI   +  VYKQ++ Q++  + LF   + +   A LP PLL
Sbjct: 62  KKLRKSALVSISAARTGVYKQVMDQLKTWRRLFNPASHHGTIATLPRPLL 111

BLAST of CmoCh07G002950 vs. TrEMBL
Match: M5WJH3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-20
Identity = 54/107 (50.47%), Postives = 81/107 (75.70%), Query Frame = 1

Query: 4   VLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFGRRL 63
           V++++   YSK+DKEDP+E+IHRRAQF+I +VL++A++  +   LRIRIR+L+++ GRRL
Sbjct: 3   VMIRKPYAYSKMDKEDPEEVIHRRAQFLIYKVLQQAETRRRPVNLRIRIRKLKLKIGRRL 62

Query: 64  KKLKK----SICNVKISVYKQIICQIRNCKSLFGR-KATNFANLPPL 106
           KKL+K    SI   ++ VYKQ+  Q++ CK+LFGR + T  A+LP L
Sbjct: 63  KKLRKSMLLSISAARVCVYKQVFSQLKTCKTLFGRGEGTIGASLPAL 109

BLAST of CmoCh07G002950 vs. TrEMBL
Match: A0A061GFQ7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030210 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.8e-20
Identity = 59/106 (55.66%), Postives = 77/106 (72.64%), Query Frame = 1

Query: 6   VKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFGRRLKK 65
           ++RS  YSKVDKEDP+EIIHRRAQF+I +VLE+ADS  K S+LRIR+ RL+V+ GRRLKK
Sbjct: 4   LRRSYAYSKVDKEDPEEIIHRRAQFLIYKVLEQADSKRKPSFLRIRLCRLKVKIGRRLKK 63

Query: 66  LKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLP-PLL 107
           L+K    SI   +   YKQ+I Q++  + LF R     ++LP PLL
Sbjct: 64  LRKCALVSISAARGGAYKQVIDQLKTWRRLFSRGGGTISSLPRPLL 109

BLAST of CmoCh07G002950 vs. TrEMBL
Match: A0A061GAZ8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_028700 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 1

Query: 5   LVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFGRRLK 64
           L++RS  YSKVDKEDP+EIIHRRAQF+I + LE+ADS  K+S+LRIR+ RL+V+ GRRLK
Sbjct: 3   LLRRSYAYSKVDKEDPEEIIHRRAQFLIYKALEQADSRRKSSFLRIRLCRLKVKIGRRLK 62

Query: 65  KLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLP-PLL 107
           KL+K     I   +  VYKQ+I Q++  + LF       ++LP PLL
Sbjct: 63  KLRKCALVCISAPRAGVYKQVIGQLKTWRRLFSLGGGTISSLPRPLL 109

BLAST of CmoCh07G002950 vs. TAIR10
Match: AT4G04745.1 (AT4G04745.1 unknown protein)

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-12
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1

Query: 12  YSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLR---------IRIRRLRVRFGRR 71
           Y+K++KEDP E+IHRRAQF+I +VLERADS  +    R         IR+  +R+R G++
Sbjct: 37  YTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIRVVGIRMRIGKK 96

Query: 72  LKKLKKS---ICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPL 106
           L+KL+K+   ICN  I+ + +   +   C S     +   ++LPPL
Sbjct: 97  LRKLRKTNTCICNNLITRFLKSFKRFL-CSSSSSSSSRTISDLPPL 141

BLAST of CmoCh07G002950 vs. TAIR10
Match: AT4G21902.1 (AT4G21902.1 unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-10
Identity = 38/112 (33.93%), Postives = 70/112 (62.50%), Query Frame = 1

Query: 5   LVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERAD------SMGKASYLRI---RIRRL 64
           ++K  N Y+K++KED +EIIHRRAQF+I+++L+RAD         + + +++   R+  +
Sbjct: 3   MMKNPNQYTKIEKEDLNEIIHRRAQFLIHKILQRADIETLRQQQKRNTTIKLFSFRVVGI 62

Query: 65  RVRFGRRLKKLKKSICNVKIS--VYKQIICQIRNCKSLFGRKATNFANLPPL 106
           R++ G++L+KL+KS   V  +  +  +++  +R  +  F     N +NLPPL
Sbjct: 63  RMKIGKKLRKLRKSCVMVDKNGDLIPRVLKSLR--RYFFCSSPRNDSNLPPL 112

BLAST of CmoCh07G002950 vs. TAIR10
Match: AT1G11655.1 (AT1G11655.1 unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.4e-10
Identity = 30/70 (42.86%), Postives = 52/70 (74.29%), Query Frame = 1

Query: 5  LVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGK----ASYLRIRIRRLRVRFG 64
          L KR   YSK+DKEDP+E++ RRA+F+I + L+ AD + +    +S++R+++  L+V+ G
Sbjct: 3  LFKRPCLYSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVKIG 62

Query: 65 RRLKKLKKSI 71
          +RL KL++S+
Sbjct: 63 KRLAKLRRSV 72

BLAST of CmoCh07G002950 vs. NCBI nr
Match: gi|778720450|ref|XP_011658155.1| (PREDICTED: uncharacterized protein LOC105435949 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 4.2e-39
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 1

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MS VL KRSNGY KVDKEDP+EIIHRRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           RRLK+LKK    SI  +KI VYKQ+I QIRNCKSLFGRK TNFAN P LL
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLL 110

BLAST of CmoCh07G002950 vs. NCBI nr
Match: gi|659078924|ref|XP_008439979.1| (PREDICTED: uncharacterized protein LOC103484604 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 3.4e-36
Identity = 84/110 (76.36%), Postives = 92/110 (83.64%), Query Frame = 1

Query: 1   MSFVLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFG 60
           MSFVL KR NGY KVDKEDP+EII RRAQF+IN+VLERADSMGK SYLRIRIRRL+VRFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 107
           +RLKKLKK    SI  +K+ VYKQ+I QIRN KSLFGRK T FAN P LL
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLL 110

BLAST of CmoCh07G002950 vs. NCBI nr
Match: gi|1009108397|ref|XP_015884531.1| (PREDICTED: uncharacterized protein LOC107420152 [Ziziphus jujuba])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 62/106 (58.49%), Postives = 78/106 (73.58%), Query Frame = 1

Query: 5   LVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADS-MGKASYLRIRIRRLRVRFGRRL 64
           +V+R  GYSKVDKEDPDE IHRRAQF+I +VLE+ADS   + SYLRIRIR+L+V+ G+RL
Sbjct: 3   IVRRPFGYSKVDKEDPDEKIHRRAQFLIYKVLEKADSRRTRPSYLRIRIRKLKVKIGKRL 62

Query: 65  KKLKKS----ICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPL 106
            KL+KS    I   K+SV KQ+ CQ++ CK LF R      +LPPL
Sbjct: 63  TKLRKSMLIGISAAKVSVGKQVCCQLKTCKRLFSRGERTVLSLPPL 108

BLAST of CmoCh07G002950 vs. NCBI nr
Match: gi|823230653|ref|XP_012448049.1| (PREDICTED: uncharacterized protein LOC105771183 [Gossypium raimondii])

HSP 1 Score: 109.4 bits (272), Expect = 4.0e-21
Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = 1

Query: 4   VLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFGRRL 63
           V+++RSNGYSKVDKEDP+EIIHRRAQF+I++VLERAD   K S+LRIR+ RL+V+ GRRL
Sbjct: 2   VILRRSNGYSKVDKEDPEEIIHRRAQFLIHKVLERADCRRKPSFLRIRLCRLKVKIGRRL 61

Query: 64  KKLKK----SICNVKISVYKQIICQIRNCKSLFGRKATN--FANLP-PLL 107
           KKL+K    SI   +  VYKQ++ Q++  + LF   + +   A LP PLL
Sbjct: 62  KKLRKSALVSISAARTGVYKQVMDQLKTWRRLFNPASHHGTIATLPRPLL 111

BLAST of CmoCh07G002950 vs. NCBI nr
Match: gi|595882861|ref|XP_007212680.1| (hypothetical protein PRUPE_ppa018445mg [Prunus persica])

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-20
Identity = 54/107 (50.47%), Postives = 81/107 (75.70%), Query Frame = 1

Query: 4   VLVKRSNGYSKVDKEDPDEIIHRRAQFIINRVLERADSMGKASYLRIRIRRLRVRFGRRL 63
           V++++   YSK+DKEDP+E+IHRRAQF+I +VL++A++  +   LRIRIR+L+++ GRRL
Sbjct: 3   VMIRKPYAYSKMDKEDPEEVIHRRAQFLIYKVLQQAETRRRPVNLRIRIRKLKLKIGRRL 62

Query: 64  KKLKK----SICNVKISVYKQIICQIRNCKSLFGR-KATNFANLPPL 106
           KKL+K    SI   ++ VYKQ+  Q++ CK+LFGR + T  A+LP L
Sbjct: 63  KKLRKSMLLSISAARVCVYKQVFSQLKTCKTLFGRGEGTIGASLPAL 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJX3_CUCSA3.0e-3980.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1[more]
A0A0D2QI53_GOSRA2.8e-2156.36Uncharacterized protein OS=Gossypium raimondii GN=B456_009G178000 PE=4 SV=1[more]
M5WJH3_PRUPE4.0e-2050.47Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1[more]
A0A061GFQ7_THECC6.8e-2055.66Uncharacterized protein OS=Theobroma cacao GN=TCM_030210 PE=4 SV=1[more]
A0A061GAZ8_THECC2.0e-1954.21Uncharacterized protein OS=Theobroma cacao GN=TCM_028700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G04745.13.6e-1239.62 unknown protein[more]
AT4G21902.13.4e-1033.93 unknown protein[more]
AT1G11655.14.4e-1042.86 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778720450|ref|XP_011658155.1|4.2e-3980.00PREDICTED: uncharacterized protein LOC105435949 [Cucumis sativus][more]
gi|659078924|ref|XP_008439979.1|3.4e-3676.36PREDICTED: uncharacterized protein LOC103484604 [Cucumis melo][more]
gi|1009108397|ref|XP_015884531.1|1.2e-2258.49PREDICTED: uncharacterized protein LOC107420152 [Ziziphus jujuba][more]
gi|823230653|ref|XP_012448049.1|4.0e-2156.36PREDICTED: uncharacterized protein LOC105771183 [Gossypium raimondii][more]
gi|595882861|ref|XP_007212680.1|5.8e-2050.47hypothetical protein PRUPE_ppa018445mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G002950.1CmoCh07G002950.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35687FAMILY NOT NAMEDcoord: 1..93
score: 4.7
NoneNo IPR availablePANTHERPTHR35687:SF1SUBFAMILY NOT NAMEDcoord: 1..93
score: 4.7

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G002950Cucumber (Gy14) v2cgybcmoB133
CmoCh07G002950Cucumber (Gy14) v2cgybcmoB253
CmoCh07G002950Cucumber (Gy14) v2cgybcmoB843
CmoCh07G002950Melon (DHL92) v3.6.1cmomedB875
CmoCh07G002950Silver-seed gourdcarcmoB0046
CmoCh07G002950Silver-seed gourdcarcmoB1187
CmoCh07G002950Silver-seed gourdcarcmoB1250
CmoCh07G002950Cucumber (Chinese Long) v3cmocucB0995
CmoCh07G002950Watermelon (97103) v2cmowmbB858
CmoCh07G002950Wax gourdcmowgoB1050
CmoCh07G002950Wax gourdcmowgoB1075
CmoCh07G002950Cucurbita moschata (Rifu)cmocmoB132
CmoCh07G002950Cucurbita moschata (Rifu)cmocmoB190
CmoCh07G002950Cucurbita moschata (Rifu)cmocmoB349
CmoCh07G002950Cucurbita moschata (Rifu)cmocmoB400
CmoCh07G002950Cucurbita moschata (Rifu)cmocmoB444
CmoCh07G002950Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G002950Cucurbita maxima (Rimu)cmacmoB162
CmoCh07G002950Cucumber (Gy14) v1cgycmoB0114
CmoCh07G002950Cucurbita maxima (Rimu)cmacmoB240
CmoCh07G002950Cucurbita maxima (Rimu)cmacmoB535
CmoCh07G002950Cucurbita maxima (Rimu)cmacmoB629
CmoCh07G002950Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G002950Wild cucumber (PI 183967)cmocpiB851
CmoCh07G002950Cucumber (Chinese Long) v2cmocuB841
CmoCh07G002950Melon (DHL92) v3.5.1cmomeB768
CmoCh07G002950Melon (DHL92) v3.5.1cmomeB772
CmoCh07G002950Watermelon (Charleston Gray)cmowcgB761
CmoCh07G002950Watermelon (97103) v1cmowmB810
CmoCh07G002950Cucurbita pepo (Zucchini)cmocpeB799
CmoCh07G002950Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G002950Cucurbita pepo (Zucchini)cmocpeB818
CmoCh07G002950Cucurbita pepo (Zucchini)cmocpeB825