Cla019387 (gene) Watermelon (97103) v1

Overview
NameCla019387
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 4779932 .. 4780273 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTTTTAGTGACAATGAGGAAAAATGGTGGTTATTCAAGGATGGAGAAGGAAGACCCAGATGAGAAAAAGCATAGACAAGCACAGTTTTTAATTTACAAGATAATGGAGCAGGCAAATAGTAGCAGTAGGAGAAGACCCTCATATCTCAGAATCAGAATAAGGAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAGACAATGTCAATGAGTTTGGCCACAGCAAGAATTGGGATTTGCAAGCAATTTGAACAACTTAGAACTTGTAAGAGCTTGTTTGGAGGAGCCAAGGTGGAAACTTTGGCCTTCCCTACTTTGGTTACTTGA

mRNA sequence

ATGAGTGTTTTAGTGACAATGAGGAAAAATGGTGGTTATTCAAGGATGGAGAAGGAAGACCCAGATGAGAAAAAGCATAGACAAGCACAGTTTTTAATTTACAAGATAATGGAGCAGGCAAATAGTAGCAGTAGGAGAAGACCCTCATATCTCAGAATCAGAATAAGGAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAGACAATGTCAATGAGTTTGGCCACAGCAAGAATTGGGATTTGCAAGCAATTTGAACAACTTAGAACTTGTAAGAGCTTGTTTGGAGGAGCCAAGGTGGAAACTTTGGCCTTCCCTACTTTGGTTACTTGA

Coding sequence (CDS)

ATGAGTGTTTTAGTGACAATGAGGAAAAATGGTGGTTATTCAAGGATGGAGAAGGAAGACCCAGATGAGAAAAAGCATAGACAAGCACAGTTTTTAATTTACAAGATAATGGAGCAGGCAAATAGTAGCAGTAGGAGAAGACCCTCATATCTCAGAATCAGAATAAGGAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAGACAATGTCAATGAGTTTGGCCACAGCAAGAATTGGGATTTGCAAGCAATTTGAACAACTTAGAACTTGTAAGAGCTTGTTTGGAGGAGCCAAGGTGGAAACTTTGGCCTTCCCTACTTTGGTTACTTGA

Protein sequence

MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKLRIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPTLVT
Homology
[Close]
BLAST of Cla019387 vs. TrEMBL
Match: A0A0A0LUT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.9e-43
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = 1 

Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MSVL+T+R+NGGYS+MEKEDPDEKKHRQAQFLIYKIMEQA++ S+RRPS LRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPT 111
           R+G+R KK+KKTM+MS +TARIGIC QF QLR+CKSLFG  KVETL FPT
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]
BLAST of Cla019387 vs. TrEMBL
Match: W9RFE3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 63/116 (54.31%), Postives = 85/116 (73.28%), Query Frame = 1 

Query: 5   VTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKLRIGK 64
           + +RK   YS+++KEDP+E+  R+AQFLIYK+MEQA+S SRRRPSYLRIRIRK K++IGK
Sbjct: 3   LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMSRRRPSYLRIRIRKLKVKIGK 62

Query: 65  RLKKLKKTMSMSLATARIGICKQF-EQLRTCKSLFGGAK-------VETLAFPTLV 113
           RL KL+K+M +S++ A++ +CKQ   Q +TC+ LFGG         V TL  P  V
Sbjct: 63  RLTKLRKSMLLSISAAKVSVCKQVCSQFKTCRRLFGGGDNHSSANLVNTLPSPLFV 118

[Close]
BLAST of Cla019387 vs. TrEMBL
Match: M5WJH3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.1e-23
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 1 

Query: 5   VTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKLRIGK 64
           V +RK   YS+M+KEDP+E  HR+AQFLIYK+++QA +  RRRP  LRIRIRK KL+IG+
Sbjct: 3   VMIRKPYAYSKMDKEDPEEVIHRRAQFLIYKVLQQAET--RRRPVNLRIRIRKLKLKIGR 62

Query: 65  RLKKLKKTMSMSLATARIGICKQ-FEQLRTCKSLFG-GAKVETLAFPTLVT 114
           RLKKL+K+M +S++ AR+ + KQ F QL+TCK+LFG G      + P L T
Sbjct: 63  RLKKLRKSMLLSISAARVCVYKQVFSQLKTCKTLFGRGEGTIGASLPALFT 111

[Close]
BLAST of Cla019387 vs. TrEMBL
Match: A0A0A0KJX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 58/114 (50.88%), Postives = 84/114 (73.68%), Query Frame = 1 

Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MS+++T R NG Y +++KEDP+E  HR+AQFLI K++E+A+S    +PSYLRIRIR+ K+
Sbjct: 1   MSLVLTKRSNG-YCKVDKEDPEEIIHRRAQFLINKVLERADSMG--KPSYLRIRIRRLKV 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQ-FEQLRTCKSLFGGAKVETLAFPTLVT 114
           R G+RLK+LKK+   S++T +IG+ KQ   Q+R CKSLFG  +     FP L++
Sbjct: 61  RFGRRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLS 111

[Close]
BLAST of Cla019387 vs. TrEMBL
Match: A0A072V4B2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-19
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1 

Query: 8   RKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKLRIGKRLK 67
           RK   YS+M+KEDP+E  HR+AQFLIYK++EQAN  SRR+ S LRI+I K K++IGKRL+
Sbjct: 5   RKPYSYSKMDKEDPEELIHRRAQFLIYKVLEQAN--SRRKSSCLRIKISKLKVKIGKRLR 64

Query: 68  KLKKTMSMSLATARIGICKQ-FEQLRTCKSLFGGAKVETLAFPTLV 113
           +L+K +  S++ AR+GI      QL+T K LFG  K   L  P+L+
Sbjct: 65  RLRKKIISSVSAARVGIHGHVVSQLKTWKRLFGREKQTLLTIPSLM 108

[Close]
BLAST of Cla019387 vs. NCBI nr
Match: gi|659067750|ref|XP_008441119.1| (PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 2.3e-43
Identity = 90/110 (81.82%), Postives = 101/110 (91.82%), Query Frame = 1 

Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           M +L+T+RKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQA++ S+RRPS LRIRIRKFKL
Sbjct: 1   MGLLMTVRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPT 111
           RIG+RLKK+KKTM+MS +TARIGIC Q  QLR+CKSLFG AKVETL FPT
Sbjct: 61  RIGRRLKKMKKTMAMSFSTARIGICSQLGQLRSCKSLFGKAKVETLNFPT 110

[Close]
BLAST of Cla019387 vs. NCBI nr
Match: gi|700209431|gb|KGN64527.1| (hypothetical protein Csa_1G063510 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-42
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = 1 

Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MSVL+T+R+NGGYS+MEKEDPDEKKHRQAQFLIYKIMEQA++ S+RRPS LRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPT 111
           R+G+R KK+KKTM+MS +TARIGIC QF QLR+CKSLFG  KVETL FPT
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]
BLAST of Cla019387 vs. NCBI nr
Match: gi|703087469|ref|XP_010093280.1| (hypothetical protein L484_006294 [Morus notabilis])

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 63/116 (54.31%), Postives = 85/116 (73.28%), Query Frame = 1 

Query: 5   VTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKLRIGK 64
           + +RK   YS+++KEDP+E+  R+AQFLIYK+MEQA+S SRRRPSYLRIRIRK K++IGK
Sbjct: 3   LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMSRRRPSYLRIRIRKLKVKIGK 62

Query: 65  RLKKLKKTMSMSLATARIGICKQF-EQLRTCKSLFGGAK-------VETLAFPTLV 113
           RL KL+K+M +S++ A++ +CKQ   Q +TC+ LFGG         V TL  P  V
Sbjct: 63  RLTKLRKSMLLSISAAKVSVCKQVCSQFKTCRRLFGGGDNHSSANLVNTLPSPLFV 118

[Close]
BLAST of Cla019387 vs. NCBI nr
Match: gi|658020944|ref|XP_008345848.1| (PREDICTED: uncharacterized protein LOC103408808 [Malus domestica])

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-23
Identity = 59/97 (60.82%), Postives = 80/97 (82.47%), Query Frame = 1 

Query: 5   VTMRKN-GGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKLRIG 64
           +T+RK+ G YS+M+KEDP+E  HR+AQFLIYK+M+Q     RRRPS LRIR+RK KL+IG
Sbjct: 3   MTIRKSYGAYSKMDKEDPEEANHRRAQFLIYKVMQQVEM--RRRPSNLRIRVRKLKLKIG 62

Query: 65  KRLKKLKKTMSMSLATARIGICKQ-FEQLRTCKSLFG 100
           +RLKKL+K+M +S++ AR+ + KQ F QL+TCK+LFG
Sbjct: 63  RRLKKLRKSMLLSISAARVCVYKQVFNQLKTCKTLFG 97

[Close]
BLAST of Cla019387 vs. NCBI nr
Match: gi|694310390|ref|XP_009352780.1| (PREDICTED: uncharacterized protein LOC103944097 [Pyrus x bretschneideri])

HSP 1 Score: 116.7 bits (291), Expect = 2.6e-23
Identity = 59/97 (60.82%), Postives = 80/97 (82.47%), Query Frame = 1 

Query: 5   VTMRKN-GGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKLRIG 64
           +T+RK+ G YS+M+KEDP+E  HR+AQFLIYK+M+Q     RRRPS LRIR+RK KL+IG
Sbjct: 3   MTIRKSYGAYSKMDKEDPEEVNHRRAQFLIYKVMQQVEM--RRRPSNLRIRVRKLKLKIG 62

Query: 65  KRLKKLKKTMSMSLATARIGICKQ-FEQLRTCKSLFG 100
           +RLKKL+K+M +S++ AR+ + KQ F QL+TCK+LFG
Sbjct: 63  RRLKKLRKSMLLSVSAARVCVYKQVFNQLKTCKTLFG 97

The following BLAST results are available for this feature:
BLAST of Cla019387 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUT4_CUCSA7.9e-4380.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1[more]
W9RFE3_9ROSA1.4e-2654.31Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1[more]
M5WJH3_PRUPE9.1e-2355.86Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1[more]
A0A0A0KJX3_CUCSA1.3e-2150.88Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1[more]
A0A072V4B2_MEDTR3.6e-1952.83Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1[more]
BLAST of Cla019387 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659067750|ref|XP_008441119.1|2.3e-4381.82PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo][more]
gi|700209431|gb|KGN64527.1|1.1e-4280.00hypothetical protein Csa_1G063510 [Cucumis sativus][more]
gi|703087469|ref|XP_010093280.1|1.9e-2654.31hypothetical protein L484_006294 [Morus notabilis][more]
gi|658020944|ref|XP_008345848.1|1.5e-2360.82PREDICTED: uncharacterized protein LOC103408808 [Malus domestica][more]
gi|694310390|ref|XP_009352780.1|2.6e-2360.82PREDICTED: uncharacterized protein LOC103944097 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU74214watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019387Cla019387.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU74214WMU74214transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35687FAMILY NOT NAMEDcoord: 1..100
score: 8.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla019387Cla97C03G055940Watermelon (97103) v2wmwmbB124
Cla019387Csa6G514800Cucumber (Chinese Long) v2cuwmB477
Cla019387Csa1G063510Cucumber (Chinese Long) v2cuwmB008
Cla019387MELO3C002462Melon (DHL92) v3.5.1mewmB149
Cla019387MELO3C007384Melon (DHL92) v3.5.1mewmB563
Cla019387ClCG03G004790Watermelon (Charleston Gray)wcgwmB223
Cla019387CSPI01G10760Wild cucumber (PI 183967)cpiwmB010
Cla019387Cucsa.045290Cucumber (Gy14) v1cgywmB020
Cla019387Cucsa.085890Cucumber (Gy14) v1cgywmB097
Cla019387CmaCh13G007350Cucurbita maxima (Rimu)cmawmB188
Cla019387CmoCh13G007640Cucurbita moschata (Rifu)cmowmB176
Cla019387Cp4.1LG09g08980Cucurbita pepo (Zucchini)cpewmB025
Cla019387Cp4.1LG20g03770Cucurbita pepo (Zucchini)cpewmB503
Cla019387MELO3C002462.2Melon (DHL92) v3.6.1medwmB145
Cla019387Carg06852Silver-seed gourdcarwmB0489
Cla019387Carg07543Silver-seed gourdcarwmB1004
Cla019387Carg07835Silver-seed gourdcarwmB0641
Cla019387CsaV3_6G049110Cucumber (Chinese Long) v3cucwmB503
Cla019387CsaV3_1G010830Cucumber (Chinese Long) v3cucwmB013
Cla019387Bhi03G000437Wax gourdwgowmB420
Cla019387Bhi08G001515Wax gourdwgowmB473
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla019387Cla014458Watermelon (97103) v1wmwmB082
The following block(s) are covering this gene:
GeneOrganismBlock
Cla019387Cucumber (Gy14) v1cgywmB070
Cla019387Cucumber (Gy14) v1cgywmB257
Cla019387Cucurbita maxima (Rimu)cmawmB371
Cla019387Cucurbita maxima (Rimu)cmawmB623
Cla019387Cucurbita maxima (Rimu)cmawmB820
Cla019387Cucurbita moschata (Rifu)cmowmB360
Cla019387Cucurbita moschata (Rifu)cmowmB614
Cla019387Cucurbita moschata (Rifu)cmowmB810
Cla019387Watermelon (Charleston Gray)wcgwmB124
Cla019387Watermelon (Charleston Gray)wcgwmB183
Cla019387Cucurbita pepo (Zucchini)cpewmB070
Cla019387Cucurbita pepo (Zucchini)cpewmB477
Cla019387Cucurbita pepo (Zucchini)cpewmB553
Cla019387Bottle gourd (USVL1VR-Ls)lsiwmB093
Cla019387Bottle gourd (USVL1VR-Ls)lsiwmB137
Cla019387Bottle gourd (USVL1VR-Ls)lsiwmB184
Cla019387Cucumber (Gy14) v2cgybwmB010
Cla019387Cucumber (Gy14) v2cgybwmB448
Cla019387Melon (DHL92) v3.6.1medwmB220
Cla019387Melon (DHL92) v3.6.1medwmB550
Cla019387Silver-seed gourdcarwmB0876
Cla019387Silver-seed gourdcarwmB0930
Cla019387Cucumber (Chinese Long) v3cucwmB129
Cla019387Cucumber (Chinese Long) v3cucwmB609
Cla019387Watermelon (97103) v2wmwmbB111
Cla019387Watermelon (97103) v2wmwmbB135
Cla019387Wax gourdwgowmB606
Cla019387Watermelon (97103) v1wmwmB087