Cp4.1LG09g08980.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g08980.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG09 : 8219219 .. 8219590 (+)
Sequence length	372

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTTATGATGAAACGTAAGCTAAATGGGTACTCAAGAATGGAGAAGGAAGACCCAGAGGAGAAAAGGCACAGACAAGCTCTGTTCTTGATTTACAAGATAATGGAGCAGGCAAGCAATGGCAATGGCAATGGCAATGGCAATGGCAATGGCAACAGGAGGAGGCCTTCTTGTCTCAGAATCAGAACACGAAAGCTTAAGCTAAGGATTGGAAGGAGGTTGAAGAAGCTGAAGAAGGGCATGTCAATGTGTTTGTCCACAGCAAGAATTGGGCTCTGCAACCAATTTCAACAGCTTAGAACTTGTAAGAGCGCGCTGCGGCGACAACCCAAGGTGGAAGCTTTGCCCTTTCCTTCTTTGGTCACTTAA

mRNA sequence

ATGAGTCTTATGATGAAACGTAAGCTAAATGGGTACTCAAGAATGGAGAAGGAAGACCCAGAGGAGAAAAGGCACAGACAAGCTCTGTTCTTGATTTACAAGATAATGGAGCAGGCAAGCAATGGCAATGGCAATGGCAATGGCAATGGCAATGGCAACAGGAGGAGGCCTTCTTGTCTCAGAATCAGAACACGAAAGCTTAAGCTAAGGATTGGAAGGAGGTTGAAGAAGCTGAAGAAGGGCATGTCAATGTGTTTGTCCACAGCAAGAATTGGGCTCTGCAACCAATTTCAACAGCTTAGAACTTGTAAGAGCGCGCTGCGGCGACAACCCAAGGTGGAAGCTTTGCCCTTTCCTTCTTTGGTCACTTAA

Coding sequence (CDS)

ATGAGTCTTATGATGAAACGTAAGCTAAATGGGTACTCAAGAATGGAGAAGGAAGACCCAGAGGAGAAAAGGCACAGACAAGCTCTGTTCTTGATTTACAAGATAATGGAGCAGGCAAGCAATGGCAATGGCAATGGCAATGGCAATGGCAATGGCAACAGGAGGAGGCCTTCTTGTCTCAGAATCAGAACACGAAAGCTTAAGCTAAGGATTGGAAGGAGGTTGAAGAAGCTGAAGAAGGGCATGTCAATGTGTTTGTCCACAGCAAGAATTGGGCTCTGCAACCAATTTCAACAGCTTAGAACTTGTAAGAGCGCGCTGCGGCGACAACCCAAGGTGGAAGCTTTGCCCTTTCCTTCTTTGGTCACTTAA

Protein sequence

MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALPFPSLVT

Homology

[Close]

BLAST of Cp4.1LG09g08980.1 vs. TrEMBL
Match: A0A0A0LUT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-29
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 3   LMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRI 62
           LM  R+  GYS+MEKEDP+EK+HRQA FLIYKIMEQASNG+          +RRPSCLRI
Sbjct: 4   LMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGS----------KRRPSCLRI 63

Query: 63  RTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALPFPS 121
           R RK KLR+GRR KK+KK M+M  STARIG+CNQF QLR+CKS L  + KVE L FP+
Sbjct: 64  RIRKFKLRMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKS-LFGKTKVETLNFPT 110

[Close]

BLAST of Cp4.1LG09g08980.1 vs. TrEMBL
Match: M5WJH3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.1e-17
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 1


Query: 4   MMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRIR 63
           +M RK   YS+M+KEDPEE  HR+A FLIYK+++QA              RRRP  LRIR
Sbjct: 3   VMIRKPYAYSKMDKEDPEEVIHRRAQFLIYKVLQQAET------------RRRPVNLRIR 62

Query: 64  TRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRRQPKVEALPFPSLV 123
            RKLKL+IGRRLKKL+K M + +S AR+ +  Q F QL+TCK+   R         P+L 
Sbjct: 63  IRKLKLKIGRRLKKLRKSMLLSISAARVCVYKQVFSQLKTCKTLFGRGEGTIGASLPALF 111

[Close]

BLAST of Cp4.1LG09g08980.1 vs. TrEMBL
Match: W9RFE3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = 1


Query: 4   MMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRIR 63
           ++ RK N YS+++KEDPEE+  R+A FLIYK+MEQA + +          RRRPS LRIR
Sbjct: 3   LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMS----------RRRPSYLRIR 62

Query: 64  TRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQF-QQLRTCK 105
            RKLK++IG+RL KL+K M + +S A++ +C Q   Q +TC+
Sbjct: 63  IRKLKVKIGKRLTKLRKSMLLSISAAKVSVCKQVCSQFKTCR 94

[Close]

BLAST of Cp4.1LG09g08980.1 vs. TrEMBL
Match: A0A0A0KJX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 1


Query: 1   MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCL 60
           MSL++ ++ NGY +++KEDPEE  HR+A FLI K++E+A             +  +PS L
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERAD------------SMGKPSYL 60

Query: 61  RIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRRQPKVEALPFP 120
           RIR R+LK+R GRRLK+LKK     +ST +IG+  Q   Q+R CKS   R+ +     FP
Sbjct: 61  RIRIRRLKVRFGRRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRK-QTNFANFP 111

Query: 121 SLVT 124
            L++
Sbjct: 121 VLLS 111

[Close]

BLAST of Cp4.1LG09g08980.1 vs. TrEMBL
Match: A0A072V4B2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = 1


Query: 3   LMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRI 62
           + + RK   YS+M+KEDPEE  HR+A FLIYK++EQA+            +RR+ SCLRI
Sbjct: 1   MALSRKPYSYSKMDKEDPEELIHRRAQFLIYKVLEQAN------------SRRKSSCLRI 60

Query: 63  RTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRRQPKVEALPFPSL 122
           +  KLK++IG+RL++L+K +   +S AR+G+      QL+T K    R+ K   L  PSL
Sbjct: 61  KISKLKVKIGKRLRRLRKKIISSVSAARVGIHGHVVSQLKTWKRLFGRE-KQTLLTIPSL 108

[Close]

BLAST of Cp4.1LG09g08980.1 vs. TAIR10
Match: AT4G04745.1 (AT4G04745.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.2e-07
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 1


Query: 1   MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPS-- 60
           M+LM+K     Y++MEKEDP+E  HR+A FLI K++E+A     +     +  RRR S  
Sbjct: 26  MALMVKNSPYEYTKMEKEDPQELIHRRAQFLIQKVLERA-----DSKTRQHQQRRRSSGP 85

Query: 61  CLRIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALP 118
            + IR   +++RIG++L+KL+K  +   +         F++     S+      +  LP
Sbjct: 86  LIMIRVVGIRMRIGKKLRKLRKTNTCICNNLITRFLKSFKRFLCSSSSSSSSRTISDLP 139

[Close]

BLAST of Cp4.1LG09g08980.1 vs. NCBI nr
Match: gi|659067750|ref|XP_008441119.1| (PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 7.0e-30
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 3   LMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRI 62
           LM  RK  GYSRMEKEDP+EK+HRQA FLIYKIMEQASNG+          +RRPSCLRI
Sbjct: 4   LMTVRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQASNGS----------KRRPSCLRI 63

Query: 63  RTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALPFPS 121
           R RK KLRIGRRLKK+KK M+M  STARIG+C+Q  QLR+CKS L  + KVE L FP+
Sbjct: 64  RIRKFKLRIGRRLKKMKKTMAMSFSTARIGICSQLGQLRSCKS-LFGKAKVETLNFPT 110

[Close]

BLAST of Cp4.1LG09g08980.1 vs. NCBI nr
Match: gi|700209431|gb|KGN64527.1| (hypothetical protein Csa_1G063510 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-29
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 3   LMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCLRI 62
           LM  R+  GYS+MEKEDP+EK+HRQA FLIYKIMEQASNG+          +RRPSCLRI
Sbjct: 4   LMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGS----------KRRPSCLRI 63

Query: 63  RTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQFQQLRTCKSALRRQPKVEALPFPS 121
           R RK KLR+GRR KK+KK M+M  STARIG+CNQF QLR+CKS L  + KVE L FP+
Sbjct: 64  RIRKFKLRMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKS-LFGKTKVETLNFPT 110

[Close]

BLAST of Cp4.1LG09g08980.1 vs. NCBI nr
Match: gi|658020944|ref|XP_008345848.1| (PREDICTED: uncharacterized protein LOC103408808 [Malus domestica])

HSP 1 Score: 96.3 bits (238), Expect = 4.0e-17
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 1


Query: 1   MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCL 60
           M++ +++    YS+M+KEDPEE  HR+A FLIYK+M+Q               RRRPS L
Sbjct: 1   MAMTIRKSYGAYSKMDKEDPEEANHRRAQFLIYKVMQQVEM------------RRRPSNL 60

Query: 61  RIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRR 110
           RIR RKLKL+IGRRLKKL+K M + +S AR+ +  Q F QL+TCK+   R
Sbjct: 61  RIRVRKLKLKIGRRLKKLRKSMLLSISAARVCVYKQVFNQLKTCKTLFGR 98

[Close]

BLAST of Cp4.1LG09g08980.1 vs. NCBI nr
Match: gi|694351115|ref|XP_009357442.1| (PREDICTED: uncharacterized protein LOC103948166 [Pyrus x bretschneideri])

HSP 1 Score: 95.5 bits (236), Expect = 6.8e-17
Identity = 53/110 (48.18%), Postives = 76/110 (69.09%), Query Frame = 1


Query: 1   MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCL 60
           M++M+++   GYS+++KEDPE+  HR+A FLIYK+++QA              RRRPS L
Sbjct: 1   MAVMIRKSYGGYSKLDKEDPEDVNHRRAQFLIYKVLQQAET------------RRRPSNL 60

Query: 61  RIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRR 110
           RIR RKLK++IGRRLKKL+K M + +STAR+ +  + F QL+TC +   R
Sbjct: 61  RIRIRKLKVKIGRRLKKLRKSMLLSISTARVCVYKRVFNQLKTCMTLFGR 98

[Close]

BLAST of Cp4.1LG09g08980.1 vs. NCBI nr
Match: gi|694310390|ref|XP_009352780.1| (PREDICTED: uncharacterized protein LOC103944097 [Pyrus x bretschneideri])

HSP 1 Score: 95.5 bits (236), Expect = 6.8e-17
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 1


Query: 1   MSLMMKRKLNGYSRMEKEDPEEKRHRQALFLIYKIMEQASNGNGNGNGNGNGNRRRPSCL 60
           M++ +++    YS+M+KEDPEE  HR+A FLIYK+M+Q               RRRPS L
Sbjct: 1   MAMTIRKSYGAYSKMDKEDPEEVNHRRAQFLIYKVMQQVEM------------RRRPSNL 60

Query: 61  RIRTRKLKLRIGRRLKKLKKGMSMCLSTARIGLCNQ-FQQLRTCKSALRR 110
           RIR RKLKL+IGRRLKKL+K M + +S AR+ +  Q F QL+TCK+   R
Sbjct: 61  RIRVRKLKLKIGRRLKKLRKSMLLSVSAARVCVYKQVFNQLKTCKTLFGR 98

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g08980.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG09g08980.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUT4_CUCSA	1.4e-29	65.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G063510 PE=4 SV=1	[more]
M5WJH3_PRUPE	8.1e-17	48.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018445mg PE=4 SV=1	[more]
W9RFE3_9ROSA	1.5e-15	49.02	Uncharacterized protein OS=Morus notabilis GN=L484_006294 PE=4 SV=1	[more]
A0A0A0KJX3_CUCSA	1.9e-13	42.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G514800 PE=4 SV=1	[more]
A0A072V4B2_MEDTR	3.2e-13	42.98	Uncharacterized protein OS=Medicago truncatula GN=MTR_2g022960 PE=4 SV=1	[more]

BLAST of Cp4.1LG09g08980.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G04745.1	5.2e-07	31.93	unknown protein	[more]

BLAST of Cp4.1LG09g08980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067750\|ref\|XP_008441119.1\|	7.0e-30	66.95	PREDICTED: uncharacterized protein LOC103485344 [Cucumis melo]	[more]
gi\|700209431\|gb\|KGN64527.1\|	2.1e-29	65.25	hypothetical protein Csa_1G063510 [Cucumis sativus]	[more]
gi\|658020944\|ref\|XP_008345848.1\|	4.0e-17	50.00	PREDICTED: uncharacterized protein LOC103408808 [Malus domestica]	[more]
gi\|694351115\|ref\|XP_009357442.1\|	6.8e-17	48.18	PREDICTED: uncharacterized protein LOC103948166 [Pyrus x bretschneideri]	[more]
gi\|694310390\|ref\|XP_009352780.1\|	6.8e-17	50.00	PREDICTED: uncharacterized protein LOC103944097 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG09g08980	Cp4.1LG09g08980	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g08980.1:cds:001	Cp4.1LG09g08980.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g08980.1	Cp4.1LG09g08980.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35687	FAMILY NOT NAMED	coord: 1..102 score: 9.6
None	No IPR available	PANTHER	PTHR35687:SF1	SUBFAMILY NOT NAMED	coord: 1..102 score: 9.6