Csa1G042680 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G042680
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPre-mRNA-splicing factor SPF27-like protein; contains IPR008409 (Pre-mRNA-splicing factor SPF27)
LocationChr1 : 4432893 .. 4436764 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTTTTGAGGCCCAAACGTGTTAAAATTAAAGAGAGAAGAAAACTGAACAAAATTCGACGCGGGCGGCCGCGGAATCTTCGTCTTCTCGCACTCTGAGCTTTCAGTAAATCCGAAACTCAAAACCTCTGTTGTTCGTGGTGGCGACAATGGCTGCTAACAACAATAATGGGGATATCCTAATGCTCGAAGCTCCACCGCAGCCATCTCAACCAGCTTGGCGCGTTTCTGCAGATGCGGAGGTTATCGACGCTTTGCCCTACATCGACGACGACTATGCCGACCCAAGGGTCAAAGCAGAGGTTGATCGCTTGGTCGAGGAAGAGATGCGGCGTAGCTCCAAGCGACCCGCCGACTTTCTCAAAGACTTACCTCCTCTTCCTAAGTTCAAATTCGAGGTAGTTTCACTTGCCATTTCCTTTTACCTCGGAGTTCTCTCTAGGTTACGCTTGATTTCATAGGCTATTGTGCCTGAAAGAACTTACTTCTTTTCCGCTGGGTATATTTGCTAGAAAGTTACTAATTGATGAGTTTGGAAGTGTTTAGAAGCTTCATCTGCTGTTTCTGTTTTCGTTTATCGAAAACGAGCTAAAGAAATTGAAATCAAAATTAACTGATTGACAAGAACATAGATATTGGCATATTGCTTATTCGAAAGTCACCGTGTGTCATCCAATGACTATGGGACGTGCCACTCTACATTAGTTCTTTAACCTTTACGTTTGATTGATCACGAGAATATTTAAAAATGTGATAATATTAGCGATAATCTATTCAACTGAACGAAGTTTGAACTCAGGATCATCCGATGCTTGCTAGGGAGTATGAGCGTGTAAGAGCTGGGAGGCCTCCAGTCCCTCTTGACGTTGCAAGATATAAATTAGAGACACCACCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAAAGCTCAATGCTTACTCCGTCATCAAGTGCTGAGGTGAAGTGTTGATACATTTTGATTGTGTTCTATTATAGGCATTTAAGATTTGTCTTTTGCCCAACTTAATTTTATGGAGATCAGTAGAGTCGACTACTTGAACGCATACAGCTCTTCTAATATCTGCAATCCCGAGTCAATATCTTCATGGGTGTTCTTAAGTTATTAAATTTATGGTTTATACTGGGCCCAAAACACCGTTGTGATAGCCAGCTCTGAGTACTTAATGTTACTGACCCTGGAAATCACTTTGCTGCATGTAACTCTTTCCCGTTGGTCATATTTATGTCCATTTTCTTGGTTGCAGTGGGTTTCTTATATCTAGTTTGTGTACATTTGGGCCATGCTTATGAGAGGTGTGATGTGATTTATACAGTTTTGGTAAGAAAAAGCAAAATACTGAAGATTATGCGTCCAAACCCTGAAAAGAAACATTAGAGAGGTCTTGATGATTCATTACGAAATAATAAGGAACCTAACCACTGGCGGTGCATTTTTGTCATACTGTAGGCTGGAAAATTTGGATCTGATGTCAAAATATGGCCCTGATATCTGGAAGCAGCACAACAAACAGCTGGAAGCACTTCTATCAAGGTTTGTTATTATTATTTTTTTATGTCATGTTTTATGCGTGCTACTAATTATGTTTTTATTGAATCAAATGTAGCTCCTAATCAATCCTTTGCTTTCTAACATCCTATAGAGTAAATTGTTCCATTACTTGCAAGAAAAAAGAATTTCAAATGGAGAAATAGTTGTTTTACATCATATTTGTGCATCTCCCTTTCTTTAATGTACTGCTAGTTGGTTTTTTTAGTTTTTATATTCATTATTATTCGTTTTTATAATTAGTACCCAAACTTCTATCACGAAAAATTGAAAGAACACAAGGACATAAAAGAAAAAGAAGAAACTAACAAAGGAAGAGACAATCTAAGAAAGGGCCTCCAACCAAGCAAAACATAACCTAACAGGTAGCTACATAACGATTTTGCCATCGGTGAAGGTATACGGTATATGATTCTCTGTCTGAACTGAATTGACTCATTAATGAAGCTATACAGTCTCCAATACTCAGCAGACATGAACCATCCACGTAAAGTTGGTCCTGCCTATGGCTCTTTCTTTCTGCATTTATGTTTGCAGACTAGGGTTCAAATTTGAGAAGGGTTAGCATTTCACATCATTTAAGGACGTAAAGCCTGTTGATTTGGTACTTGGAAAAACATATTTTACAGTTGATGCATTGTTGACAATTCTTTGGTGGTTTCTAATTTTCTTTATAGTCATGCCAACCAACCTATGTACACACAGATTGGGATAGGTGCTGATCTAGGGCGGTTTCATAGATTTACTTACAAACTATGAATCAATCCTCTTAATTGTATAAAACGGGATACACAAGAACTTAATGTTTGGAATCTTCGTGGTCTAATAATAATACGATTCTGTGTTTAAATATTATCCATGGTGGATTCCAACATCCACTTGTATGGGCATGTTATCTGAGGCAAGGACTGTTGCTATGAAAACTGAAAACTATTGCATCACAGGCATTAGTTTTATGGAACACTTGGCCACATTTTATCTGTCGTTTCTGAGTGAAATGAACATGAAAGTACCGAGTGCATCTGTTATCTGATCAAAAGTGACCATATATAATTGTTACTTATATTGCCACAATGTTGATTGTTATCAGAATGCAAAAATTAGCTCAGGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAAGTAAGTAGCATCCTTGTAATTCATAATACAGTAGGGCAGAGACCAATTCTTTGAAATACTTGGTTGATTAATTATGCAATGCCCAGCAAAACGCTGCATATGAGCTTCATGCTCTATCCACGCAATGGAAGGAGCTTTGTGAGAAAAATATGGAAATCCAAGTGGCATGCTTTCAATTAGAGGGTCAAATACAGGAATTGAGGAGAGAGGCAGCAGAAAAGTAATATTACCCTTTCAATTTGATCTATTTTTATTACTCATGTGTTTTCATATTTACAACTGAGCTGAGATTAACGATTCAGGGGCTGGAATTTGGAAGTCAATGTAGAAAATGGTTCTGTTTCCCTTCCAGTATCATAAGGTATGCTTTAGATGTCGTCTCTTGTTCTTAATATCTGACGTTTAACCCAAAGTTCACTTCCATTTCACCTTCGTATATTAGAATTTCTAACTTAACACTATTTGTACAATATTTTCCTTTCTACTGTTAATTTCTTTTCAATATCTCGTATTAAATGAGATATCTGTCATGTGTTACCATACCCCTCTTCACATTAGTTTAGCAATCTCAGGGCATAAATTGGGACTAATTCTATTCTACCATTAATATACTCATATATTTCCTCGTACAACATATGAGTTAATAACTTAATACTATAATTCAATCTAAATTTGTCAAGTTCGTAAAGGAGAAAGCTAAGTTTAGTGATGGCGGAAACTTTTAACCTTTACAGTATTGTATCATGTTAATTATACTGGTATATTATGACATGTTTTTTTGTCATCTCAATGAAAAAGGGGAGCGTCCTAACCATGGTTTTTGCTACTCAAAAGTAAAGACCCCCAACGTCTTTTGTTGCCGTTATGGTATGCCTACATGGAAGATGAGTTAGATTTCTGCTTATTATAAGAGGTTGGTTGCTTTTCTTGGCCTCCAAAGTTTGTGTCATTTTCAAATTTTATATTGAATTGATTTGTATCTGTACCTTCAGTGAAGTAATTTGAAAACACCTACTTCTGCTAACCGTGTTACTTGGTTACTCTCTGACTTGAATATAGATTATTGTGTAAAAATTGTTTAACCCAGACTATCTATCAAATGGTTGATATTTGATTAATTATTCCGAAA

mRNA sequence

ATGGCTGCTAACAACAATAATGGGGATATCCTAATGCTCGAAGCTCCACCGCAGCCATCTCAACCAGCTTGGCGCGTTTCTGCAGATGCGGAGGTTATCGACGCTTTGCCCTACATCGACGACGACTATGCCGACCCAAGGGTCAAAGCAGAGGTTGATCGCTTGGTCGAGGAAGAGATGCGGCGTAGCTCCAAGCGACCCGCCGACTTTCTCAAAGACTTACCTCCTCTTCCTAAGTTCAAATTCGAGGATCATCCGATGCTTGCTAGGGAGTATGAGCGTGTAAGAGCTGGGAGGCCTCCAGTCCCTCTTGACGTTGCAAGATATAAATTAGAGACACCACCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAAAGCTCAATGCTTACTCCGTCATCAAGTGCTGAGGCTGGAAAATTTGGATCTGATGTCAAAATATGGCCCTGATATCTGGAAGCAGCACAACAAACAGCTGGAAGCACTTCTATCAAGAATGCAAAAATTAGCTCAGGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAACAAAACGCTGCATATGAGCTTCATGCTCTATCCACGCAATGGAAGGAGCTTTGTGAGAAAAATATGGAAATCCAAGTGGCATGCTTTCAATTAGAGGGTCAAATACAGGAATTGAGGAGAGAGGCAGCAGAAAAGGGCTGGAATTTGGAAGTCAATGTAGAAAATGGTTCTGTTTCCCTTCCAGTATCATAA

Coding sequence (CDS)

ATGGCTGCTAACAACAATAATGGGGATATCCTAATGCTCGAAGCTCCACCGCAGCCATCTCAACCAGCTTGGCGCGTTTCTGCAGATGCGGAGGTTATCGACGCTTTGCCCTACATCGACGACGACTATGCCGACCCAAGGGTCAAAGCAGAGGTTGATCGCTTGGTCGAGGAAGAGATGCGGCGTAGCTCCAAGCGACCCGCCGACTTTCTCAAAGACTTACCTCCTCTTCCTAAGTTCAAATTCGAGGATCATCCGATGCTTGCTAGGGAGTATGAGCGTGTAAGAGCTGGGAGGCCTCCAGTCCCTCTTGACGTTGCAAGATATAAATTAGAGACACCACCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAAAGCTCAATGCTTACTCCGTCATCAAGTGCTGAGGCTGGAAAATTTGGATCTGATGTCAAAATATGGCCCTGATATCTGGAAGCAGCACAACAAACAGCTGGAAGCACTTCTATCAAGAATGCAAAAATTAGCTCAGGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAACAAAACGCTGCATATGAGCTTCATGCTCTATCCACGCAATGGAAGGAGCTTTGTGAGAAAAATATGGAAATCCAAGTGGCATGCTTTCAATTAGAGGGTCAAATACAGGAATTGAGGAGAGAGGCAGCAGAAAAGGGCTGGAATTTGGAAGTCAATGTAGAAAATGGTTCTGTTTCCCTTCCAGTATCATAA

Protein sequence

MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNLEVNVENGSVSLPVS*
Homology
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BLAST of Csa1G042680 vs. Swiss-Prot
Match: SPF27_ARATH (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 3.2e-93
Identity = 163/244 (66.80%), Postives = 203/244 (83.20%), Query Frame = 1 

Query: 6   NNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65
           NNGD+LMLEA P+ ++P W  +A+AEVIDALPYIDDDY +P +K+EVDRLVEEEMRRSSK
Sbjct: 4   NNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSSK 63

Query: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDV-ARYKLETPPPNKKNDETA 125
           +PADFLKDLPPLPKF F++ P+L +EYERVRAG+PPV +D  +RYKLE PP NK+ND+ A
Sbjct: 64  KPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDAA 123

Query: 126 WKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEK 185
           WKQ LQK Q  L+ +++ LENL+LMSK GP++W+Q+N +LE  L+RMQ+LAQEQNE+IEK
Sbjct: 124 WKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEK 183

Query: 186 VNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNLEV 245
           VNRERK+HQQ  +YEL+ALS +W++LC KNMEIQ AC  LE QI   ++EAAE+GWNLE 
Sbjct: 184 VNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLEE 243

Query: 246 NVEN 249
            +EN
Sbjct: 244 KLEN 246

[Close]
BLAST of Csa1G042680 vs. Swiss-Prot
Match: SPF27_XENTR (Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-30
Identity = 73/212 (34.43%), Postives = 114/212 (53.77%), Query Frame = 1 

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y    V+     LVEEE RR   RP        P P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYDAQGVREAAAALVEEETRRY--RPTKNYLSYLPTPDYSAFETEIMRNE 71

Query: 92  YERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSK 151
           +ER+ + +P   L + RY+L  P   ++ND TAW++ +  +   L HQ +R+ENL+LMS+
Sbjct: 72  FERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 131

Query: 152 YGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELC 211
           +G + WK +N+ L  ++   QK  Q+  +KI+ +N +RK  Q  A   L  + + W  L 
Sbjct: 132 HGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLREMESTWVSLV 191

Query: 212 EKNMEIQVACFQLEGQIQELRREAAEKGWNLE 244
            KN EI+ A  Q+E ++ +L+  + E   N+E
Sbjct: 192 SKNYEIERAIVQMENEVYQLKERSGENKENIE 221

[Close]
BLAST of Csa1G042680 vs. Swiss-Prot
Match: SPF27_DANRE (Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30
Identity = 71/206 (34.47%), Postives = 108/206 (52.43%), Query Frame = 1 

Query: 33  IDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREY 92
           +DALPY D  Y    V+     LVEEE RR   RP        P P F   +  ++  E+
Sbjct: 13  VDALPYFDQGYDATGVREAAAALVEEETRRY--RPTKNYLSYLPTPDFSAFETEIMRNEF 72

Query: 93  ERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSKY 152
           ER+ A +P   L + RY+L  P   +KND TAW+  +  +   L HQ +R+ENL+LM++Y
Sbjct: 73  ERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQY 132

Query: 153 GPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCE 212
           G + WK  N  L  ++   QK  Q   ++I+ +N +RK  Q     +L  L + W  L  
Sbjct: 133 GTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRKNDQLAGGAKLRELESNWVSLVS 192

Query: 213 KNMEIQVACFQLEGQIQELRREAAEK 239
           KN EI+ A  QLE ++ +++++  ++
Sbjct: 193 KNYEIERAIVQLENEVAQMKQQQGDE 216

[Close]
BLAST of Csa1G042680 vs. Swiss-Prot
Match: SPF27_MOUSE (Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-30
Identity = 72/206 (34.95%), Postives = 111/206 (53.88%), Query Frame = 1 

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y  P V+     LVEEE RR   RP          P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY--RPTKNYLSYLTAPDYSAFETDIMRNE 71

Query: 92  YERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSK 151
           +ER+ A +P   L + RY+L  P   +KND TAW++ +  +   L HQ +R+ENL+LMS+
Sbjct: 72  FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 131

Query: 152 YGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELC 211
           +G + WK +N+ L  ++   QK  Q+  + I+ +N +RK  Q  A  +L  + + W  L 
Sbjct: 132 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLV 191

Query: 212 EKNMEIQVACFQLEGQIQELRREAAE 238
            KN EI+    QLE +I +++++  E
Sbjct: 192 SKNYEIERTIVQLENEIYQIKQQHGE 215

[Close]
BLAST of Csa1G042680 vs. Swiss-Prot
Match: SPF27_PONAB (Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-30
Identity = 74/207 (35.75%), Postives = 112/207 (54.11%), Query Frame = 1 

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y  P V+     LVEEE RR   RP          P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY--RPTKNYLSYLTAPDYSAFETDIMRNE 71

Query: 92  YERVRAGRPPVPLDVARYKLETPPPN-KKNDETAWKQTLQKAQCLLRHQVLRLENLDLMS 151
           +ER+ A +P   L + RY+L  PP   KKND TAW++ +  +   L HQ +R+ENL+LMS
Sbjct: 72  FERLAARQPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLELMS 131

Query: 152 KYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKEL 211
           ++G + WK +N+ L  ++   QK  Q+  + I+ +N +RK  Q  A  +L  + + W  L
Sbjct: 132 QHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSL 191

Query: 212 CEKNMEIQVACFQLEGQIQELRREAAE 238
             KN EI+    QLE +I +++++  E
Sbjct: 192 VSKNYEIERTIVQLENEIYQIKQQHGE 216

[Close]
BLAST of Csa1G042680 vs. TrEMBL
Match: A0A0A0LQG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042680 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 2.5e-145
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSLPVS 257
           NLEVNVENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of Csa1G042680 vs. TrEMBL
Match: A0A067KSC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05347 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 4.4e-105
Identity = 185/252 (73.41%), Postives = 219/252 (86.90%), Query Frame = 1 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           M    N+ DILMLEAPP+PS+P W  S +AE++DALPYIDDDY  P VKAEVDRLVEEEM
Sbjct: 1   MTTTGNSSDILMLEAPPEPSRP-WSNSFNAEIVDALPYIDDDYGHPSVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYK-LETPPPNKK 120
           RRS K+PADFLKDLPPL KF FE++PMLA+EYERVRAG+PP  LD +RY  L+ PP NK 
Sbjct: 61  RRSHKKPADFLKDLPPLQKFSFENYPMLAKEYERVRAGKPPSTLDFSRYSHLDLPPANKM 120

Query: 121 NDETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQN 180
           N+ETAWKQ LQKA+CLL+HQV+RLENLDL+SKYGP++W QHN+QLEA+LSRMQKLA+EQN
Sbjct: 121 NEETAWKQALQKAECLLQHQVIRLENLDLISKYGPNVWIQHNQQLEAMLSRMQKLAREQN 180

Query: 181 EKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKG 240
           EKIE VNRERK+HQQN AYE+ ALS QWKELC+KN+EIQ AC ++E QI+EL++EAAE+G
Sbjct: 181 EKIEAVNRERKYHQQNTAYEMSALSMQWKELCQKNIEIQAACTKIEMQIEELKKEAAERG 240

Query: 241 WNLEVNVENGSV 252
           WNLE N+ENGSV
Sbjct: 241 WNLEANIENGSV 251

[Close]
BLAST of Csa1G042680 vs. TrEMBL
Match: A0A151TKA6_CAJCA (Pre-mRNA-splicing factor SPF27 OS=Cajanus cajan GN=KK1_023817 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 5.0e-101
Identity = 179/249 (71.89%), Postives = 212/249 (85.14%), Query Frame = 1 

Query: 3   ANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRR 62
           A+ +NG++LMLEAPP   +PA   S+DAE+IDALPYIDDDYADPRVK EVDRLVEEEMRR
Sbjct: 2   ADRSNGEVLMLEAPPSYGKPA---SSDAEIIDALPYIDDDYADPRVKLEVDRLVEEEMRR 61

Query: 63  SSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDE 122
           SSK+P DFLKD PPLP   F+++PM+AREYERVRAGRPPV LD +RY+LE PP NK+NDE
Sbjct: 62  SSKKPTDFLKDFPPLPNSSFQNYPMIAREYERVRAGRPPVALDRSRYELEMPPANKRNDE 121

Query: 123 TAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKI 182
           TAWKQ L +AQ LL++Q++R+ENLDLM KYGPD WK HN++LE  LSRMQKLAQEQNEKI
Sbjct: 122 TAWKQALNRAQRLLQYQMMRMENLDLMLKYGPDTWKLHNQRLEVYLSRMQKLAQEQNEKI 181

Query: 183 EKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNL 242
           EKVNRERK+HQQN AYEL+ALS QWKELC+KN++I  AC  +E +I EL+REAAE+GWNL
Sbjct: 182 EKVNRERKYHQQNTAYELNALSMQWKELCQKNIDISAACASVENRINELKREAAERGWNL 241

Query: 243 EVNVENGSV 252
           E   ENG +
Sbjct: 242 ESVTENGQL 247

[Close]
BLAST of Csa1G042680 vs. TrEMBL
Match: V4UKY4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009263mg PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.1e-100
Identity = 176/248 (70.97%), Postives = 217/248 (87.50%), Query Frame = 1 

Query: 2   AANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMR 61
           +++NNNGDILMLEAPP  ++P W    +AE+IDALPYIDDDYADPRVK EVDR+VE+EMR
Sbjct: 3   SSSNNNGDILMLEAPPDAARP-W----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMR 62

Query: 62  RSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKND 121
           RSSK+P+DFLK+LPPL KF+FE+HPMLA+EYERVRAG+PP  LD  RY+LE  P NK+ND
Sbjct: 63  RSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRND 122

Query: 122 ETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEK 181
           E+AWKQ LQKAQ L +HQ++RLENL+LMSK+GP++W+QHN++LEALL  MQ+LAQEQNEK
Sbjct: 123 ESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEK 182

Query: 182 IEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWN 241
           IE VNRERK+HQQN AYEL+ALSTQW+ELC KN+EIQ AC  +E  I+ELR+EAAE GWN
Sbjct: 183 IEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWN 242

Query: 242 LEVNVENG 250
           L++++E G
Sbjct: 243 LDIDMEKG 245

[Close]
BLAST of Csa1G042680 vs. TrEMBL
Match: A0A067F653_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025332mg PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.1e-100
Identity = 176/248 (70.97%), Postives = 217/248 (87.50%), Query Frame = 1 

Query: 2   AANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMR 61
           +++NNNGDILMLEAPP  ++P W    +AE+IDALPYIDDDYADPRVK EVDR+VE+EMR
Sbjct: 3   SSSNNNGDILMLEAPPDAARP-W----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMR 62

Query: 62  RSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKND 121
           RSSK+P+DFLK+LPPL KF+FE+HPMLA+EYERVRAG+PP  LD  RY+LE  P NK+ND
Sbjct: 63  RSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRND 122

Query: 122 ETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEK 181
           E+AWKQ LQKAQ L +HQ++RLENL+LMSK+GP++W+QHN++LEALL  MQ+LAQEQNEK
Sbjct: 123 ESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEK 182

Query: 182 IEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWN 241
           IE VNRERK+HQQN AYEL+ALSTQW+ELC KN+EIQ AC  +E  I+ELR+EAAE GWN
Sbjct: 183 IEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWN 242

Query: 242 LEVNVENG 250
           L++++E G
Sbjct: 243 LDIDMEKG 245

[Close]
BLAST of Csa1G042680 vs. TAIR10
Match: AT3G18165.1 (AT3G18165.1 modifier of snc1,4)

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-94
Identity = 163/244 (66.80%), Postives = 203/244 (83.20%), Query Frame = 1 

Query: 6   NNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65
           NNGD+LMLEA P+ ++P W  +A+AEVIDALPYIDDDY +P +K+EVDRLVEEEMRRSSK
Sbjct: 4   NNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSSK 63

Query: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDV-ARYKLETPPPNKKNDETA 125
           +PADFLKDLPPLPKF F++ P+L +EYERVRAG+PPV +D  +RYKLE PP NK+ND+ A
Sbjct: 64  KPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDAA 123

Query: 126 WKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEK 185
           WKQ LQK Q  L+ +++ LENL+LMSK GP++W+Q+N +LE  L+RMQ+LAQEQNE+IEK
Sbjct: 124 WKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEK 183

Query: 186 VNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNLEV 245
           VNRERK+HQQ  +YEL+ALS +W++LC KNMEIQ AC  LE QI   ++EAAE+GWNLE 
Sbjct: 184 VNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLEE 243

Query: 246 NVEN 249
            +EN
Sbjct: 244 KLEN 246

[Close]
BLAST of Csa1G042680 vs. NCBI nr
Match: gi|449439443|ref|XP_004137495.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus])

HSP 1 Score: 522.7 bits (1345), Expect = 3.6e-145
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSLPVS 257
           NLEVNVENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of Csa1G042680 vs. NCBI nr
Match: gi|659066815|ref|XP_008462680.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo])

HSP 1 Score: 520.4 bits (1339), Expect = 1.8e-144
Identity = 255/256 (99.61%), Postives = 255/256 (99.61%), Query Frame = 1 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPK KFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSLPVS 257
           NLEVNVENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of Csa1G042680 vs. NCBI nr
Match: gi|802599707|ref|XP_012072552.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas])

HSP 1 Score: 389.0 bits (998), Expect = 6.3e-105
Identity = 185/252 (73.41%), Postives = 219/252 (86.90%), Query Frame = 1 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           M    N+ DILMLEAPP+PS+P W  S +AE++DALPYIDDDY  P VKAEVDRLVEEEM
Sbjct: 1   MTTTGNSSDILMLEAPPEPSRP-WSNSFNAEIVDALPYIDDDYGHPSVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYK-LETPPPNKK 120
           RRS K+PADFLKDLPPL KF FE++PMLA+EYERVRAG+PP  LD +RY  L+ PP NK 
Sbjct: 61  RRSHKKPADFLKDLPPLQKFSFENYPMLAKEYERVRAGKPPSTLDFSRYSHLDLPPANKM 120

Query: 121 NDETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQN 180
           N+ETAWKQ LQKA+CLL+HQV+RLENLDL+SKYGP++W QHN+QLEA+LSRMQKLA+EQN
Sbjct: 121 NEETAWKQALQKAECLLQHQVIRLENLDLISKYGPNVWIQHNQQLEAMLSRMQKLAREQN 180

Query: 181 EKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKG 240
           EKIE VNRERK+HQQN AYE+ ALS QWKELC+KN+EIQ AC ++E QI+EL++EAAE+G
Sbjct: 181 EKIEAVNRERKYHQQNTAYEMSALSMQWKELCQKNIEIQAACTKIEMQIEELKKEAAERG 240

Query: 241 WNLEVNVENGSV 252
           WNLE N+ENGSV
Sbjct: 241 WNLEANIENGSV 251

[Close]
BLAST of Csa1G042680 vs. NCBI nr
Match: gi|1009131528|ref|XP_015882890.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Ziziphus jujuba])

HSP 1 Score: 386.3 bits (991), Expect = 4.1e-104
Identity = 186/249 (74.70%), Postives = 212/249 (85.14%), Query Frame = 1 

Query: 3   ANNNNGDILMLEAPPQ-PSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMR 62
           ANNNNG+ILMLEAPPQ P+ P+WR SA+AE+IDALPYIDDDY +P VK EVDRLVEEEMR
Sbjct: 2   ANNNNGEILMLEAPPQQPTGPSWRPSANAEIIDALPYIDDDYGNPVVKKEVDRLVEEEMR 61

Query: 63  RSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKND 122
           RS K+P DFLKDLPPLPK  F+D+PMLAREYERVRA +PP+ LD +R KLETPP NK+ND
Sbjct: 62  RSFKKPNDFLKDLPPLPKSNFQDNPMLAREYERVRAAKPPIILDFSRDKLETPPVNKRND 121

Query: 123 ETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEK 182
           ETAWKQ LQKAQC  +HQV RLENLD+  KYG + WKQHN++LE LLSRMQKLAQE  EK
Sbjct: 122 ETAWKQALQKAQCSFQHQVFRLENLDVTFKYGSEAWKQHNRRLEVLLSRMQKLAQEHFEK 181

Query: 183 IEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWN 242
           IE VNR+RKFHQQN A+EL+ALS QWKELC+KN+EIQ AC QLE  I EL++EAAE+GWN
Sbjct: 182 IEAVNRDRKFHQQNTAFELNALSAQWKELCQKNIEIQAACAQLENHISELKKEAAERGWN 241

Query: 243 LEVNVENGS 251
           LE   ENGS
Sbjct: 242 LETGAENGS 250

[Close]
BLAST of Csa1G042680 vs. NCBI nr
Match: gi|224135477|ref|XP_002322083.1| (hypothetical protein POPTR_0015s04220g [Populus trichocarpa])

HSP 1 Score: 380.9 bits (977), Expect = 1.7e-102
Identity = 179/250 (71.60%), Postives = 221/250 (88.40%), Query Frame = 1 

Query: 3   ANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRR 62
           +N+ NGD+LMLEA P+ S+P W  S++AE+IDALPYIDDDY +P VKAEVDRLVEEEMRR
Sbjct: 4   SNSANGDMLMLEAAPEASRP-WSTSSNAEIIDALPYIDDDYGNPSVKAEVDRLVEEEMRR 63

Query: 63  SSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYK-LETPPPNKKND 122
           SSK+P+DFLK+LPP+PKF FE++PMLA+EYERVRAGRPPV LD +RY  L+ P  NK ND
Sbjct: 64  SSKKPSDFLKELPPVPKFTFENYPMLAKEYERVRAGRPPVTLDFSRYSHLDLPAANKMND 123

Query: 123 ETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEK 182
           ETAWKQ LQ+AQ LL+HQV+RLENL+LMSKYGP++W QHN+QLE +L+R QKLA+EQNEK
Sbjct: 124 ETAWKQALQRAQRLLQHQVIRLENLELMSKYGPEVWIQHNRQLETMLTRTQKLAREQNEK 183

Query: 183 IEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWN 242
           IE VNRERK+HQQN AYEL+ALS QWKELC+KN+EIQ AC ++E QI+EL+RE++E+GWN
Sbjct: 184 IEAVNRERKYHQQNTAYELNALSAQWKELCQKNIEIQEACIKIENQIEELKRESSERGWN 243

Query: 243 LEVNVENGSV 252
           +E N+ENGS+
Sbjct: 244 VEANIENGSL 252

The following BLAST results are available for this feature:
BLAST of Csa1G042680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SPF27_ARATH3.2e-9366.80Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1[more]
SPF27_XENTR1.0e-3034.43Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2 SV=1[more]
SPF27_DANRE1.3e-3034.47Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1[more]
SPF27_MOUSE1.7e-3034.95Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=1 SV=1[more]
SPF27_PONAB1.7e-3035.75Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1[more]
BLAST of Csa1G042680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQG2_CUCSA2.5e-145100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042680 PE=4 SV=1[more]
A0A067KSC7_JATCU4.4e-10573.41Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05347 PE=4 SV=1[more]
A0A151TKA6_CAJCA5.0e-10171.89Pre-mRNA-splicing factor SPF27 OS=Cajanus cajan GN=KK1_023817 PE=4 SV=1[more]
V4UKY4_9ROSI1.1e-10070.97Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009263mg PE=4 SV=1[more]
A0A067F653_CITSI1.1e-10070.97Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025332mg PE=4 SV=1[more]
BLAST of Csa1G042680 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18165.11.8e-9466.80 modifier of snc1,4[more]
BLAST of Csa1G042680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439443|ref|XP_004137495.1|3.6e-145100.00PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus][more]
gi|659066815|ref|XP_008462680.1|1.8e-14499.61PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo][more]
gi|802599707|ref|XP_012072552.1|6.3e-10573.41PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas][more]
gi|1009131528|ref|XP_015882890.1|4.1e-10474.70PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Ziziphus jujuba][more]
gi|224135477|ref|XP_002322083.1|1.7e-10271.60hypothetical protein POPTR_0015s04220g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008409SPF27
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009870 defense response signaling pathway, resistance gene-dependent
biological_process GO:0010204 defense response signaling pathway, resistance gene-independent
biological_process GO:0042742 defense response to bacterium
biological_process GO:0050832 defense response to fungus
biological_process GO:0006397 mRNA processing
biological_process GO:0001510 RNA methylation
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0000974 Prp19 complex
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103135cucumber EST collection version 3.0transcribed_cluster
CU107936cucumber EST collection version 3.0transcribed_cluster
CU141227cucumber EST collection version 3.0transcribed_cluster
CU155036cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G042680.1Csa1G042680.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU155036CU155036transcribed_cluster
CU103135CU103135transcribed_cluster
CU107936CU107936transcribed_cluster
CU141227CU141227transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008409Pre-mRNA-splicing factor SPF27PFAMPF05700BCAS2coord: 31..237
score: 1.2
NoneNo IPR availableunknownCoilCoilcoord: 214..234
score: -coord: 157..195
scor
NoneNo IPR availablePANTHERPTHR13296BCAS2 PROTEINcoord: 11..245
score: 9.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G042680Cla018468Watermelon (97103) v1cuwmB062
Csa1G042680MELO3C002120Melon (DHL92) v3.5.1cumeB027
Csa1G042680ClCG04G010780Watermelon (Charleston Gray)cuwcgB057
Csa1G042680Lsi02G002200Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G042680MELO3C002120.2Melon (DHL92) v3.6.1cumedB022
Csa1G042680Cla97C04G077600Watermelon (97103) v2cuwmbB054
Csa1G042680Bhi08G001062Wax gourdcuwgoB028
Csa1G042680CSPI01G07080Wild cucumber (PI 183967)cpicuB000
Csa1G042680Cucsa.121810Cucumber (Gy14) v1cgycuB159
Csa1G042680CmaCh18G000590Cucurbita maxima (Rimu)cmacuB390
Csa1G042680CmaCh13G010010Cucurbita maxima (Rimu)cmacuB217
Csa1G042680CmoCh13G010370Cucurbita moschata (Rifu)cmocuB202
Csa1G042680CmoCh18G000460Cucurbita moschata (Rifu)cmocuB380
Csa1G042680Cp4.1LG20g01510Cucurbita pepo (Zucchini)cpecuB505
Csa1G042680Cp4.1LG09g11170Cucurbita pepo (Zucchini)cpecuB029
Csa1G042680CsGy1G006890Cucumber (Gy14) v2cgybcuB001
Csa1G042680Carg04837Silver-seed gourdcarcuB0415
Csa1G042680Carg22734Silver-seed gourdcarcuB0542
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G042680Silver-seed gourdcarcuB0623
Csa1G042680Silver-seed gourdcarcuB0802
Csa1G042680Watermelon (97103) v2cuwmbB080
Csa1G042680Wax gourdcuwgoB093
Csa1G042680Cucumber (Chinese Long) v2cucuB000
Csa1G042680Cucumber (Gy14) v1cgycuB139
Csa1G042680Cucurbita maxima (Rimu)cmacuB056
Csa1G042680Cucurbita maxima (Rimu)cmacuB088
Csa1G042680Cucurbita moschata (Rifu)cmocuB046
Csa1G042680Cucurbita moschata (Rifu)cmocuB077
Csa1G042680Melon (DHL92) v3.5.1cumeB056
Csa1G042680Watermelon (Charleston Gray)cuwcgB083
Csa1G042680Watermelon (97103) v1cuwmB096
Csa1G042680Cucurbita pepo (Zucchini)cpecuB369
Csa1G042680Cucurbita pepo (Zucchini)cpecuB655
Csa1G042680Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G042680Cucumber (Gy14) v2cgybcuB004
Csa1G042680Melon (DHL92) v3.6.1cumedB048