Carg04837 (gene) Silver-seed gourd

Overview
NameCarg04837
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpre-mRNA-splicing factor SPF27 homolog
LocationCucurbita_argyrosperma_scaffold_028 : 1223630 .. 1225696 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAGGGAAACCCCAATTATATTTAGCGAAGCGGGCCGCGGAATCTCAATCTTCTTGAACTTGAGCTTCCTGTAAATCTAAAGCTCAAAACCTTTGTTGCTTGTTGTTGTGACAATGGCGATCAACAACAATAGCGGGGATATCCTGATGCTCGAGGCTCCACCGCAGCCATCTCAACCAGCGTGGCGCGTTTCTGCAGATGCGGAGGTAATCGACGCCTTGCCCTACATCGACGATGACTATGCGGACCCAAGGGTCAAAGCAGAGGTCGATCGATTAGTGGAGGAAGAGATGCGGCGCAGCTCCAAGCGACCTGCCGACTTTCTCAAAGACTTGCCTCCTCTTCCCAAGTTCAAATTTGAGGTAGGTTAGGCTGCAATTTCCTTTCCCGCCGGAGCTTCTTCTAGGTTACGCACTTGTAGTTCCGCTTGATTTTATAGGTTATCATGCCTGAAAGAACGAATTACTTTTTCTCTCTGGTTTTATTTGATAGACAGTTACTAATGCCGAAACTGGAAGTGTTTAGAAGCTTCATCTGCTAGTTTTCTTCCAAAACATCCTCTATTTGTTTTCTCGAAAACGAGATGAAAAAATTCGGATAAAAATTAATCGTTCGACAAGAACATAGGATATGAGAACACTGCTTATCCTCAAGTCACTGTGCGTCATCCAATGAATATATGACGCGCTACTCTACATAAGTTATTTTGCCACTACATTGGATAGATCTTGAAATTATTACGAAGTGTGATAATATTAGCAATAGTCTATTCAACTGACGTAGTTTGAACTCAGGATCATCCAATGCTTGCGAGAGAGTATGAACGTGTAAGAGCTGGGAGGCCTCCAATGCCTCTCGATGTTGCTAGATATAAATTAGAGACACCGCCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAGAGCTCAATGCCTACTCCAGCATCAAGTGCTGAGGTGAAGTTTAGCATGTTAAAGTTGTTCCTGGCATTTAAGCTTTGTATTTCTGGAAAACTTAATTTTATGGAGAACAGTTAGAGTTGGCTACTTGAACTCATACAGTTCTTCTAATATCTGCCACACATAGTTAACATTTCTATGCCTTTTCTTGGTTGCAGTTGGTTTCTCATATCTAGTTTGTGTACCAATGAGCCATGACTGTGAGAGGTGTAATTTATAAAATTTTGATAAGAAAAGACATAATTCAGAAGATTATACGCCCAAACATGAAATTAAACATTAGAAAGTTTTTGACGATTCATTAGGAGATAATAAGAATATGGTAATCTGATGACTGGTGATGCTGTTGTCTCATACTGCAGGCTGGAAAATTTGGAACTGATGTCAAAATATGGCCCTGATATCTGGAAGCAACACAACAAACAGTTGGAAGCACTTCTATCAAGGTTTGTTACCATATTTCTTTTTGATGTCTTATATTTTGTGTACTAATTTTCTATTTATGTTGATCAAATATGATTCAAAGTCAAATCATTTGGCTTATCTCGTTCTATAGTGTAAATATGATTTCTGAATGAAGTGAACATGAAATTTAAGTACATCTGTGATCTGACCAAAGTAGACTATATGATTGTTAATATATTGTCATGATGTTATCAGAATGCAAAAATTAGCTCAAGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAAGTAAGTAGCATCCCTGTAATTCATATTTCAATGGGGCAGAGGTCAATTCTTTGGAATGTTTGGTTGATTATTTATGCGATGATCAGCAAAACGCTGCATATGAGCTTCATGCTTTGTCCACACAATGGAAGGAGCTGTGCGAGAAAAATATGGAAATCCAAGTGGCATGCTCTCAAATAGAGGGTCAAATCCAGGAACTAAGGAGTGAGGCAGCAGAAAAGTAATCTTGCCTTCTTCTATTTAATCTATTTTTGTCCTACATATGTTTGGCATGTTTAGTACTGATCTGTGGGTTATGATTCCAGAGGCTGGAATTTGGAAGTCAATGTAGAGAATGGTTCTGTTTCGTTCCCAGTGTCATAA

mRNA sequence

AAGAGGGAAACCCCAATTATATTTAGCGAAGCGGGCCGCGGAATCTCAATCTTCTTGAACTTGAGCTTCCTGTAAATCTAAAGCTCAAAACCTTTGTTGCTTGTTGTTGTGACAATGGCGATCAACAACAATAGCGGGGATATCCTGATGCTCGAGGCTCCACCGCAGCCATCTCAACCAGCGTGGCGCGTTTCTGCAGATGCGGAGGTAATCGACGCCTTGCCCTACATCGACGATGACTATGCGGACCCAAGGGTCAAAGCAGAGGTCGATCGATTAGTGGAGGAAGAGATGCGGCGCAGCTCCAAGCGACCTGCCGACTTTCTCAAAGACTTGCCTCCTCTTCCCAAGTTCAAATTTGAGGATCATCCAATGCTTGCGAGAGAGTATGAACGTGTAAGAGCTGGGAGGCCTCCAATGCCTCTCGATGTTGCTAGATATAAATTAGAGACACCGCCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAGAGCTCAATGCCTACTCCAGCATCAAGTGCTGAGGCTGGAAAATTTGGAACTGATGTCAAAATATGGCCCTGATATCTGGAAGCAACACAACAAACAGTTGGAAGCACTTCTATCAAGAATGCAAAAATTAGCTCAAGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAACAAAACGCTGCATATGAGCTTCATGCTTTGTCCACACAATGGAAGGAGCTGTGCGAGAAAAATATGGAAATCCAAGTGGCATGCTCTCAAATAGAGGGTCAAATCCAGGAACTAAGGAGTGAGGCAGCAGAAAAAGGCTGGAATTTGGAAGTCAATGTAGAGAATGGTTCTGTTTCGTTCCCAGTGTCATAA

Coding sequence (CDS)

ATGGCGATCAACAACAATAGCGGGGATATCCTGATGCTCGAGGCTCCACCGCAGCCATCTCAACCAGCGTGGCGCGTTTCTGCAGATGCGGAGGTAATCGACGCCTTGCCCTACATCGACGATGACTATGCGGACCCAAGGGTCAAAGCAGAGGTCGATCGATTAGTGGAGGAAGAGATGCGGCGCAGCTCCAAGCGACCTGCCGACTTTCTCAAAGACTTGCCTCCTCTTCCCAAGTTCAAATTTGAGGATCATCCAATGCTTGCGAGAGAGTATGAACGTGTAAGAGCTGGGAGGCCTCCAATGCCTCTCGATGTTGCTAGATATAAATTAGAGACACCGCCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAGAGCTCAATGCCTACTCCAGCATCAAGTGCTGAGGCTGGAAAATTTGGAACTGATGTCAAAATATGGCCCTGATATCTGGAAGCAACACAACAAACAGTTGGAAGCACTTCTATCAAGAATGCAAAAATTAGCTCAAGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAACAAAACGCTGCATATGAGCTTCATGCTTTGTCCACACAATGGAAGGAGCTGTGCGAGAAAAATATGGAAATCCAAGTGGCATGCTCTCAAATAGAGGGTCAAATCCAGGAACTAAGGAGTGAGGCAGCAGAAAAAGGCTGGAATTTGGAAGTCAATGTAGAGAATGGTTCTGTTTCGTTCCCAGTGTCATAA

Protein sequence

MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGWNLEVNVENGSVSFPVS
Homology
[Close]
BLAST of Carg04837 vs. NCBI nr
Match: XP_023518986.1 (pre-mRNA-splicing factor SPF27 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 508.1 bits (1307), Expect = 1.8e-140
Identity = 255/256 (99.61%), Postives = 256/256 (100.00%), Query Frame = 0 

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240

Query: 241 NLEVNVENGSVSFPVS 257
           NLEVNVENGSVSFP+S
Sbjct: 241 NLEVNVENGSVSFPMS 256

[Close]
BLAST of Carg04837 vs. NCBI nr
Match: XP_022923949.1 (pre-mRNA-splicing factor SPF27 homolog [Cucurbita moschata] >XP_022923950.1 pre-mRNA-splicing factor SPF27 homolog [Cucurbita moschata])

HSP 1 Score: 506.9 bits (1304), Expect = 4.0e-140
Identity = 255/256 (99.61%), Postives = 255/256 (99.61%), Query Frame = 0 

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQRAQCLLQHQVLRLENLELMSKY PDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYAPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240

Query: 241 NLEVNVENGSVSFPVS 257
           NLEVNVENGSVSFPVS
Sbjct: 241 NLEVNVENGSVSFPVS 256

[Close]
BLAST of Carg04837 vs. NCBI nr
Match: XP_023001174.1 (pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima] >XP_023001176.1 pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima] >XP_023001177.1 pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima])

HSP 1 Score: 503.4 bits (1295), Expect = 4.4e-139
Identity = 254/256 (99.22%), Postives = 254/256 (99.22%), Query Frame = 0 

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAINNNSGDILMLEAPP PSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAINNNSGDILMLEAPPLPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQRAQCLLQHQVLRLENLELMSKYG DIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGSDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240

Query: 241 NLEVNVENGSVSFPVS 257
           NLEVNVENGSVSFPVS
Sbjct: 241 NLEVNVENGSVSFPVS 256

[Close]
BLAST of Carg04837 vs. NCBI nr
Match: XP_004137495.1 (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] >KGN64160.1 hypothetical protein Csa_1G042680 [Cucumis sativus])

HSP 1 Score: 493.4 bits (1269), Expect = 4.6e-136
Identity = 246/256 (96.09%), Postives = 252/256 (98.44%), Query Frame = 0 

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA NNN+GDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLL+HQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVAC Q+EGQIQELR EAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSFPVS 257
           NLEVNVENGSVS PVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of Carg04837 vs. NCBI nr
Match: XP_008462680.1 (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo])

HSP 1 Score: 491.1 bits (1263), Expect = 2.3e-135
Identity = 245/256 (95.70%), Postives = 251/256 (98.05%), Query Frame = 0 

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA NNN+GDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPK KFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLL+HQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVAC Q+EGQIQELR EAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSFPVS 257
           NLEVNVENGSVS PVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of Carg04837 vs. TAIR10
Match: AT3G18165.1 (modifier of snc1,4)

HSP 1 Score: 328.2 bits (840), Expect = 4.6e-90
Identity = 161/244 (65.98%), Postives = 205/244 (84.02%), Query Frame = 0 

Query: 6   NSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65
           N+GD+LMLEA P+ ++P W  +A+AEVIDALPYIDDDY +P +K+EVDRLVEEEMRRSSK
Sbjct: 4   NNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSSK 63

Query: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDV-ARYKLETPPPNKKNDETA 125
           +PADFLKDLPPLPKF F++ P+L +EYERVRAG+PP+ +D  +RYKLE PP NK+ND+ A
Sbjct: 64  KPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDAA 123

Query: 126 WKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEK 185
           WKQ LQ+ Q  LQ +++ LENLELMSK GP++W+Q+N +LE  L+RMQ+LAQEQNE+IEK
Sbjct: 124 WKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEK 183

Query: 186 VNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGWNLEV 245
           VNRERK+HQQ  +YEL+ALS +W++LC KNMEIQ AC+ +E QI   + EAAE+GWNLE 
Sbjct: 184 VNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLEE 243

Query: 246 NVEN 249
            +EN
Sbjct: 244 KLEN 246

[Close]
BLAST of Carg04837 vs. Swiss-Prot
Match: sp|Q949S9|SPF27_ARATH (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 PE=1 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 8.3e-89
Identity = 161/244 (65.98%), Postives = 205/244 (84.02%), Query Frame = 0 

Query: 6   NSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65
           N+GD+LMLEA P+ ++P W  +A+AEVIDALPYIDDDY +P +K+EVDRLVEEEMRRSSK
Sbjct: 4   NNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSSK 63

Query: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDV-ARYKLETPPPNKKNDETA 125
           +PADFLKDLPPLPKF F++ P+L +EYERVRAG+PP+ +D  +RYKLE PP NK+ND+ A
Sbjct: 64  KPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDAA 123

Query: 126 WKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEK 185
           WKQ LQ+ Q  LQ +++ LENLELMSK GP++W+Q+N +LE  L+RMQ+LAQEQNE+IEK
Sbjct: 124 WKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEK 183

Query: 186 VNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGWNLEV 245
           VNRERK+HQQ  +YEL+ALS +W++LC KNMEIQ AC+ +E QI   + EAAE+GWNLE 
Sbjct: 184 VNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLEE 243

Query: 246 NVEN 249
            +EN
Sbjct: 244 KLEN 246

[Close]
BLAST of Carg04837 vs. Swiss-Prot
Match: sp|Q6PBE2|SPF27_XENTR (Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis OX=8364 GN=bcas2 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-27
Identity = 74/212 (34.91%), Postives = 117/212 (55.19%), Query Frame = 0 

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y    V+     LVEEE RR   RP        P P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYDAQGVREAAAALVEEETRR--YRPTKNYLSYLPTPDYSAFETEIMRNE 71

Query: 92  YERVRAGRPPMPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLQHQVLRLENLELMSK 151
           +ER+ + +P   L + RY+L  P   ++ND TAW++ +  +   L+HQ +R+ENLELMS+
Sbjct: 72  FERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 131

Query: 152 YGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELC 211
           +G + WK +N+ L  ++   QK  Q+  +KI+ +N +RK  Q  A   L  + + W  L 
Sbjct: 132 HGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLREMESTWVSLV 191

Query: 212 EKNMEIQVACSQIEGQIQELRSEAAEKGWNLE 244
            KN EI+ A  Q+E ++ +L+  + E   N+E
Sbjct: 192 SKNYEIERAIVQMENEVYQLKERSGENKENIE 221

[Close]
BLAST of Carg04837 vs. Swiss-Prot
Match: sp|Q5RKQ0|SPF27_DANRE (Pre-mRNA-splicing factor SPF27 OS=Danio rerio OX=7955 GN=bcas2 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.9e-27
Identity = 71/206 (34.47%), Postives = 110/206 (53.40%), Query Frame = 0 

Query: 33  IDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREY 92
           +DALPY D  Y    V+     LVEEE RR   RP        P P F   +  ++  E+
Sbjct: 13  VDALPYFDQGYDATGVREAAAALVEEETRR--YRPTKNYLSYLPTPDFSAFETEIMRNEF 72

Query: 93  ERVRAGRPPMPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLQHQVLRLENLELMSKY 152
           ER+ A +P   L + RY+L  P   +KND TAW+  +  +   L+HQ +R+ENLELM++Y
Sbjct: 73  ERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQY 132

Query: 153 GPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCE 212
           G + WK  N  L  ++   QK  Q   ++I+ +N +RK  Q     +L  L + W  L  
Sbjct: 133 GTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRKNDQLAGGAKLRELESNWVSLVS 192

Query: 213 KNMEIQVACSQIEGQIQELRSEAAEK 239
           KN EI+ A  Q+E ++ +++ +  ++
Sbjct: 193 KNYEIERAIVQLENEVAQMKQQQGDE 216

[Close]
BLAST of Carg04837 vs. Swiss-Prot
Match: sp|O75934|SPF27_HUMAN (Pre-mRNA-splicing factor SPF27 OS=Homo sapiens OX=9606 GN=BCAS2 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.0e-27
Identity = 72/206 (34.95%), Postives = 113/206 (54.85%), Query Frame = 0 

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y  P V+     LVEEE RR   RP          P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRR--YRPTKNYLSYLTAPDYSAFETDIMRNE 71

Query: 92  YERVRAGRPPMPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLQHQVLRLENLELMSK 151
           +ER+ A +P   L + RY+L  P   +KND TAW++ +  +   L+HQ +R+ENLELMS+
Sbjct: 72  FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 131

Query: 152 YGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELC 211
           +G + WK +N+ L  ++   QK  Q+  + I+ +N +RK  Q  A  +L  + + W  L 
Sbjct: 132 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLV 191

Query: 212 EKNMEIQVACSQIEGQIQELRSEAAE 238
            KN EI+    Q+E +I +++ +  E
Sbjct: 192 SKNYEIERTIVQLENEIYQIKQQHGE 215

[Close]
BLAST of Carg04837 vs. Swiss-Prot
Match: sp|Q9D287|SPF27_MOUSE (Pre-mRNA-splicing factor SPF27 OS=Mus musculus OX=10090 GN=Bcas2 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.0e-27
Identity = 72/206 (34.95%), Postives = 113/206 (54.85%), Query Frame = 0 

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y  P V+     LVEEE RR   RP          P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRR--YRPTKNYLSYLTAPDYSAFETDIMRNE 71

Query: 92  YERVRAGRPPMPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLQHQVLRLENLELMSK 151
           +ER+ A +P   L + RY+L  P   +KND TAW++ +  +   L+HQ +R+ENLELMS+
Sbjct: 72  FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 131

Query: 152 YGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELC 211
           +G + WK +N+ L  ++   QK  Q+  + I+ +N +RK  Q  A  +L  + + W  L 
Sbjct: 132 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLV 191

Query: 212 EKNMEIQVACSQIEGQIQELRSEAAE 238
            KN EI+    Q+E +I +++ +  E
Sbjct: 192 SKNYEIERTIVQLENEIYQIKQQHGE 215

[Close]
BLAST of Carg04837 vs. TrEMBL
Match: tr|A0A0A0LQG2|A0A0A0LQG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042680 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 3.0e-136
Identity = 246/256 (96.09%), Postives = 252/256 (98.44%), Query Frame = 0 

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA NNN+GDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLL+HQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVAC Q+EGQIQELR EAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSFPVS 257
           NLEVNVENGSVS PVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of Carg04837 vs. TrEMBL
Match: tr|A0A1S3CHH7|A0A1S3CHH7_CUCME (pre-mRNA-splicing factor SPF27 homolog OS=Cucumis melo OX=3656 GN=LOC103500959 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 1.5e-135
Identity = 245/256 (95.70%), Postives = 251/256 (98.05%), Query Frame = 0 

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA NNN+GDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPK KFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLL+HQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVAC Q+EGQIQELR EAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSFPVS 257
           NLEVNVENGSVS PVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of Carg04837 vs. TrEMBL
Match: tr|A0A067KSC7|A0A067KSC7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05347 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 2.4e-101
Identity = 186/252 (73.81%), Postives = 219/252 (86.90%), Query Frame = 0 

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           M    NS DILMLEAPP+PS+P W  S +AE++DALPYIDDDY  P VKAEVDRLVEEEM
Sbjct: 1   MTTTGNSSDILMLEAPPEPSRP-WSNSFNAEIVDALPYIDDDYGHPSVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYK-LETPPPNKK 120
           RRS K+PADFLKDLPPL KF FE++PMLA+EYERVRAG+PP  LD +RY  L+ PP NK 
Sbjct: 61  RRSHKKPADFLKDLPPLQKFSFENYPMLAKEYERVRAGKPPSTLDFSRYSHLDLPPANKM 120

Query: 121 NDETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQN 180
           N+ETAWKQ LQ+A+CLLQHQV+RLENL+L+SKYGP++W QHN+QLEA+LSRMQKLA+EQN
Sbjct: 121 NEETAWKQALQKAECLLQHQVIRLENLDLISKYGPNVWIQHNQQLEAMLSRMQKLAREQN 180

Query: 181 EKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKG 240
           EKIE VNRERK+HQQN AYE+ ALS QWKELC+KN+EIQ AC++IE QI+EL+ EAAE+G
Sbjct: 181 EKIEAVNRERKYHQQNTAYEMSALSMQWKELCQKNIEIQAACTKIEMQIEELKKEAAERG 240

Query: 241 WNLEVNVENGSV 252
           WNLE N+ENGSV
Sbjct: 241 WNLEANIENGSV 251

[Close]
BLAST of Carg04837 vs. TrEMBL
Match: tr|A0A2I4HMY7|A0A2I4HMY7_9ROSI (pre-mRNA-splicing factor SPF27 homolog OS=Juglans regia OX=51240 GN=LOC109019629 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 2.7e-100
Identity = 182/251 (72.51%), Postives = 218/251 (86.85%), Query Frame = 0 

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA ++++G+ILM+EAPPQPS P W  S+ AE+IDALPYID DY + RVK EVDRLVEEEM
Sbjct: 1   MANHDSNGEILMIEAPPQPSAPTWPGSSSAELIDALPYIDGDYGNARVKEEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSK+PADFLKDLPPLPKF FE++PM+AREYERVRAG+PP+PLD +RY LE PP NK+N
Sbjct: 61  RRSSKKPADFLKDLPPLPKFNFENNPMIAREYERVRAGKPPVPLDRSRYNLEPPPMNKRN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLLQ+Q++ LENL+LM KYGPD+WKQ  ++LE  LSR QKLAQEQ E
Sbjct: 121 DETAWKQTLQKAQCLLQYQMISLENLDLMVKYGPDLWKQFIQRLEVFLSRTQKLAQEQTE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240
           KIE VNRERK+HQQN AYEL ALS QWKELC+KN++IQ AC+ IE  I+ELR EA+E+GW
Sbjct: 181 KIETVNRERKYHQQNTAYELSALSIQWKELCQKNIQIQTACTTIENHIEELRKEASERGW 240

Query: 241 NLEVNVENGSV 252
           NLE +++NGSV
Sbjct: 241 NLEADLQNGSV 251

[Close]
BLAST of Carg04837 vs. TrEMBL
Match: tr|B9IE93|B9IE93_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G041800v3 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 5.6e-98
Identity = 180/249 (72.29%), Postives = 219/249 (87.95%), Query Frame = 0 

Query: 4   NNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRS 63
           N+ +GD+LMLEA P+ S+P W  S++AE+IDALPYIDDDY +P VKAEVDRLVEEEMRRS
Sbjct: 5   NSANGDMLMLEAAPEASRP-WSTSSNAEIIDALPYIDDDYGNPSVKAEVDRLVEEEMRRS 64

Query: 64  SKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYK-LETPPPNKKNDE 123
           SK+P+DFLK+LPP+PKF FE++PMLA+EYERVRAGRPP+ LD +RY  L+ P  NK NDE
Sbjct: 65  SKKPSDFLKELPPVPKFTFENYPMLAKEYERVRAGRPPVTLDFSRYSHLDLPAANKMNDE 124

Query: 124 TAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKI 183
           TAWKQ LQRAQ LLQHQV+RLENLELMSKYGP++W QHN+QLE +L+R QKLA+EQNEKI
Sbjct: 125 TAWKQALQRAQRLLQHQVIRLENLELMSKYGPEVWIQHNRQLETMLTRTQKLAREQNEKI 184

Query: 184 EKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGWNL 243
           E VNRERK+HQQN AYEL+ALS QWKELC+KN+EIQ AC +IE QI+EL+ E++E+GWN+
Sbjct: 185 EAVNRERKYHQQNTAYELNALSAQWKELCQKNIEIQEACIKIENQIEELKRESSERGWNV 244

Query: 244 EVNVENGSV 252
           E N+ENGS+
Sbjct: 245 EANIENGSL 252

The following BLAST results are available for this feature:
BLAST of Carg04837 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023518986.11.8e-14099.61pre-mRNA-splicing factor SPF27 homolog [Cucurbita pepo subsp. pepo][more]
XP_022923949.14.0e-14099.61pre-mRNA-splicing factor SPF27 homolog [Cucurbita moschata] >XP_022923950.1 pre-... [more]
XP_023001174.14.4e-13999.22pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima] >XP_023001176.1 pre-mR... [more]
XP_004137495.14.6e-13696.09PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] >KGN64160.1 ... [more]
XP_008462680.12.3e-13595.70PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo][more]
BLAST of Carg04837 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18165.14.6e-9065.98modifier of snc1,4[more]
BLAST of Carg04837 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q949S9|SPF27_ARATH8.3e-8965.98Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 P... [more]
sp|Q6PBE2|SPF27_XENTR3.1e-2734.91Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis OX=8364 GN=bcas2 PE=2 SV=1[more]
sp|Q5RKQ0|SPF27_DANRE6.9e-2734.47Pre-mRNA-splicing factor SPF27 OS=Danio rerio OX=7955 GN=bcas2 PE=2 SV=1[more]
sp|O75934|SPF27_HUMAN9.0e-2734.95Pre-mRNA-splicing factor SPF27 OS=Homo sapiens OX=9606 GN=BCAS2 PE=1 SV=1[more]
sp|Q9D287|SPF27_MOUSE9.0e-2734.95Pre-mRNA-splicing factor SPF27 OS=Mus musculus OX=10090 GN=Bcas2 PE=1 SV=1[more]
BLAST of Carg04837 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQG2|A0A0A0LQG2_CUCSA3.0e-13696.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042680 PE=4 SV=1[more]
tr|A0A1S3CHH7|A0A1S3CHH7_CUCME1.5e-13595.70pre-mRNA-splicing factor SPF27 homolog OS=Cucumis melo OX=3656 GN=LOC103500959 P... [more]
tr|A0A067KSC7|A0A067KSC7_JATCU2.4e-10173.81Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05347 PE=4 SV=1[more]
tr|A0A2I4HMY7|A0A2I4HMY7_9ROSI2.7e-10072.51pre-mRNA-splicing factor SPF27 homolog OS=Juglans regia OX=51240 GN=LOC109019629... [more]
tr|B9IE93|B9IE93_POPTR5.6e-9872.29Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G041800v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR008409SPF27
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04837-RACarg04837-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 157..195
NoneNo IPR availableCOILSCoilCoilcoord: 214..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
IPR008409Pre-mRNA-splicing factor SPF27PFAMPF05700BCAS2coord: 31..237
e-value: 2.8E-73
score: 245.9
IPR008409Pre-mRNA-splicing factor SPF27PANTHERPTHR13296BCAS2 PROTEINcoord: 22..243

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg04837Cla018468Watermelon (97103) v1carwmB0387
Carg04837Csa1G042680Cucumber (Chinese Long) v2carcuB0415
Carg04837MELO3C002120Melon (DHL92) v3.5.1carmeB0393
Carg04837ClCG04G010780Watermelon (Charleston Gray)carwcgB0383
Carg04837CSPI01G07080Wild cucumber (PI 183967)carcpiB0418
Carg04837Cucsa.121810Cucumber (Gy14) v1carcgyB0452
Carg04837CmaCh18G000590Cucurbita maxima (Rimu)carcmaB0541
Carg04837CmaCh13G010010Cucurbita maxima (Rimu)carcmaB0540
Carg04837CmoCh18G000460Cucurbita moschata (Rifu)carcmoB0527
Carg04837CmoCh13G010370Cucurbita moschata (Rifu)carcmoB0526
Carg04837Lsi02G002200Bottle gourd (USVL1VR-Ls)carlsiB353
Carg04837Cp4.1LG09g11170Cucurbita pepo (Zucchini)carcpeB0539
Carg04837Cp4.1LG20g01510Cucurbita pepo (Zucchini)carcpeB0544
Carg04837CsGy1G006890Cucumber (Gy14) v2carcgybB0393
Carg04837MELO3C002120.2Melon (DHL92) v3.6.1carmedB0397
Carg04837CsaV3_1G007020Cucumber (Chinese Long) v3carcucB0418
Carg04837Cla97C04G077600Watermelon (97103) v2carwmbB0409
Carg04837Bhi08G001062Wax gourdcarwgoB0473
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg04837Carg22734Silver-seed gourdcarcarB413
The following block(s) are covering this gene:
GeneOrganismBlock
Carg04837Silver-seed gourdcarcarB416
Carg04837Silver-seed gourdcarcarB418
Carg04837Cucumber (Gy14) v2carcgybB0394
Carg04837Cucumber (Gy14) v1carcgyB0449
Carg04837Cucurbita maxima (Rimu)carcmaB0538
Carg04837Cucurbita moschata (Rifu)carcmoB0524
Carg04837Cucurbita pepo (Zucchini)carcpeB0548
Carg04837Wild cucumber (PI 183967)carcpiB0419
Carg04837Cucumber (Chinese Long) v2carcuB0416
Carg04837Cucumber (Chinese Long) v3carcucB0419
Carg04837Bottle gourd (USVL1VR-Ls)carlsiB359
Carg04837Melon (DHL92) v3.5.1carmeB0396
Carg04837Melon (DHL92) v3.6.1carmedB0400
Carg04837Watermelon (Charleston Gray)carwcgB0388
Carg04837Watermelon (97103) v1carwmB0391
Carg04837Watermelon (97103) v2carwmbB0415