CsGy1G006890 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G006890
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionpre-mRNA-splicing factor SPF27 homolog
LocationChr1 : 4423990 .. 4428811 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTATTATATATATTATAAATATTTGGTAAAATTTACTATTTTTTATATTTTAGAATATAAACTCTATAGTTTTTTTTATTGACTATAATGTTAATTTCATAAAGTTTTGAGGCCCAAACGTGTTAAAATTAAAGAGAGAAGAAAACTGAACAAAATTCGACGCGGGCGGCCGCGGAATCTTCGTCTTCTCGCACTCTGAGCTTTCAGTAAATCCGAAACTCAAAACCTCTGTTGTTCGTGGTGGCGACAATGGCTGCTAACAACAATAATGGGGATATCCTAATGCTCGAAGCTCCACCGCAGCCATCTCAACCAGCTTGGCGCGTTTCTGCAGATGCGGAGGTTATCGACGCTTTGCCCTACATCGACGACGACTATGCCGACCCAAGGGTCAAAGCAGAGGTTGATCGCTTGGTCGAGGAAGAGATGCGGCGTAGCTCCAAGCGACCCGCCGACTTTCTCAAAGACTTACCTCCTCTTCCTAAGTTCAAATTCGAGGTAGTTTCACTTGCCATTTCCTTTTACCTCGGAGTTCTCTCTAGGTTACGCTTGATTTCATAGGCTATTGTGCCTGAAAGAACTTACTTCTTTTCCGCTGGGTATATTTGCTAGAAAGTTACTAATTGATGAGTTTGGAAGTGTTTAGAAGCTTCATCTGCTGTTTCTGTTTTCGTTTATCGAAAACGAGCTAAAGAAATTGAAATCAAAATTAACTGATTGACAAGAACATAGATATTGGCATATTGCTTATTCGAAAGTCACCGTGTGTCATCCAATGACTATGGGACGTGCCACTCTACATTAGTTCTTTAACCTTTACGTTTGATTGATCACGAGAATATTTAAAAATGTGATAATATTAGCGATAATCTATTCAACTGAACGAAGTTTGAACTCAGGATCATCCGATGCTTGCTAGGGAGTATGAGCGTGTAAGAGCTGGGAGGCCTCCAGTCCCTCTTGACGTTGCAAGATATAAATTAGAGACACCACCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAAAGCTCAATGCTTACTCCGTCATCAAGTGCTGAGGTGAAGTGTTGATACATTTTGATTGTGTTCTATTATAGGCATTTAAGATTTGTCTTTTGCCCAACTTAATTTTATGGAGATCAGTAGAGTCGACTACTTGAACGCATACAGCTCTTCTAATATCTGCAATCCCGAGTCAATATCTTCATGGGTGTTCTTAAGTTATTAAATTTATGGTTTATACTGGGCCCAAAACACCGTTGTGATAGCCAGCTCTGAGTACTTAATGTTACTGACCCTGGAAATCACTTTGCTGCATGTAACTCTTTCCCGTTGGTCATATTTATGTCCATTTTCTTGGTTGCAGTGGGTTTCTTATATCTAGTTTGTGTACATTTGGGCCATGCTTATGAGAGGTGTGATGTGATTTATACAGTTTTGGTAAGAAAAAGCAAAATACTGAAGATTATGCGTCCAAACCCTGAAAAGAAACATTAGAGAGGTCTTGATGATTCATTACGAAATAATAAGGAACCTAACCACTGGCGGTGCATTTTTGTCATACTGTAGGCTGGAAAATTTGGATCTGATGTCAAAATATGGCCCTGATATCTGGAAGCAGCACAACAAACAGCTGGAAGCACTTCTATCAAGGTTTGTTATTATTATTTTTTTATGTCATGTTTTATGCGTGCTACTAATTATGTTTTTATTGAATCAAATGTAGCTCCTAATCAATCCTTTGCTTTCTAACATCCTATAGAGTAAATTGTTCCATTACTTGCAAGAAAAAAGAATTTCAAATGGAGAAATAGTTGTTTTACATCATATTTGTGCATCTCCCTTTCTTTAATGTACTGCTAGTTGGTTTTTTTAGTTTTTATATTCATTATTATTCGTTTTTATAATTAGTACCCAAACTTCTATCACGAAAAATTGAAAGAACACAAGGACATAAAAGAAAAAGAAGAAACTAACAAAGGAAGAGACAATCTAAGAAAGGGCCTCCAACCAAGCAAAACATAACCTAACAGGTAGCTACATAACGATTTTGCCATCGGTGAAGGTATACGGTATATGATTCTCTGTCTGAACTGAATTGACTCATTAATGAAGCTATACAGTCTCCAATACTCAGCAGACATGAACCATCCACGTAAAGTTGGTCCTGCCTATGGCTCTTTCTTTCTGCATTTATGTTTGCAGACTAGGGTTCAAATTTGAGAAGGGTTAGCATTTCACATCATTTAAGGACGTAAAGCCTGTTGATTTGGTACTTGGAAAAACATATTTTACAGTTGATGCATTGTTGACAATTCTTTGGTGGTTTCTAATTTTCTTTATAGTCATGCCAACCAACCTATGTACACACAGATTGGGATAGGTGCTGATCTAGGGCGGTTTCATAGATTTACTTACAAACTATGAATCAATCCTCTTAATTGTATAAAACGGGATACACAAGAACTTAATGTTTGGAATCTTCGTGGTCTAATAATAATACGATTCTGTGTTTAAATATTATCCATGGTGGATTCCAACATCCACTTGTATGGGCATGTTATCTGAGGCAAGGACTGTTGCTATGAAAACTGAAAACTATTGCATCACAGGCATTAGTTTTATGGAACACTTGGCCACATTTTATCTGTCGTTTCTGAGTGAAATGAACATGAAAGTACCGAGTGCATCTGTTATCTGATCAAAAGTGACCATATATAATTGTTACTTATATTGCCACAATGTTGATTGTTATCAGAATGCAAAAATTAGCTCAGGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAAGTAAGTAGCATCCTTGTAATTCATAATACAGTAGGGCAGAGACCAATTCTTTGAAATACTTGGTTGATTAATTATGCAATGCCCAGCAAAACGCTGCATATGAGCTTCATGCTCTATCCACGCAATGGAAGGAGCTTTGTGAGAAAAATATGGAAATCCAAGTGGCATGCTTTCAATTAGAGGGTCAAATACAGGAATTGAGGAGAGAGGCAGCAGAAAAGTAATATTACCCTTTCAATTTGATCTATTTTTATTACTCATGTGTTTTCATATTTACAACTGAGCTGAGATTAACGATTCAGGGGCTGGAATTTGGAAGTCAATGTAGAAAATGGTTCTGTTTCCCTTCCAGTATCATAAGGTATGCTTTAGATGTCGTCTCTTGTTCTTAATATCTGACGTTTAACCCAAAGTTCACTTCCATTTCACCTTCGTATATTAGAATTTCTAACTTAACACTATTTGTACAATATTTTCCTTTCTACTGTTAATTTCTTTTCAATATCTCGTATTAAATGAGATATCTGTCATGTGTTACCATACCCCTCTTCACATTAGTTTAGCAATCTCAGGGCATAAATTGGGACTAATTCTATTCTACCATTAATATACTCATATATTTCCTCGTACAACATATGAGTTAATAACTTAATACTATAATTCAATCTAAATTTGTCAAGTTCGTAAAGGAGAAAGCTAAGTTTAGTGATGGCGGAAACTTTTAACCTTTACAGTATTGTATCATGTTAATTATACTGGTATATTATGACATGTTTTTTTGTCATCTCAATGAAAAAGGGGAGCGTCCTAACCATGGTTTTTGCTACTCAAAAGTAAAGACCCCCAACGTCTTTTGTTGCCGTTATGGTATGCCTACATGGAAGATGAGTTAGATTTCTGCTTATTATAAGAGGTTGGTTGCTTTTCTTGGCCTCCAAAGTTTGTGTCATTTTCAAATTTTATATTGAATTGATTTGTATCTGTACCTTCAGTGAAGTAATTTGAAAACACCTACTTCTGCTAACCGTGTTACTTGGTTACTCTCTGACTTGAATATAGATTATTGTGTAAAAATTGTTTAACCCAGACTATCTATCAAATGGTTGATATTTGATTAATTATTCCGAAATAAACCACTAGACAGATTTAATTTAGAGAGATTTATTTACGACCTTCTGTTCTATAGGTTGTACTCCTTGAGTTCTAAGGAAGCTAGAGAGATTTCTTTTGCTGGGGCAAATGGCAGTGGATATTTTAGCCAAGTCTAAACATTTTTTTTTCACTTGGACTGATATTGATGATCATTTTTTCAAACTTAAAGAAATCCAATCAATCGATAAGTATGGTTCGAATTGATTCTAGATATAGCAGATAAAATGTGGCTTCTTAATGTTAAAACCAGCTGTTCAATCCGGATTTGTGCTGTTAAGACTTTTAAAATAATGTCTATAAGTGTTGTGTGTGTATAGCTTTGCGTATTACGTCTAAAGTACTTTGATGCTTAAGATAGTACATAGCTTGTCTACTTAAGTAGCGAATACTATTTCCACTATTAGTGTGTCGCGTATTGTATGGTGCACATGTTAGTGAAGTGCGACAAGGAAAATGCCACCGTTGCGCTCAATAGGCAATCTTACACTTTGACTTGGCCTAATTATCTAATGCTTTTCATTGTCAATTTTGTCTTAGCTGTGGGTTGGAAGGACGATGTTGCTTTGCATAGTTATTGAGCACTAGAATTGATTGAATAGAACATAGTTCAATTCTTTGAGTATAATGTAAGTCGAACCATATAGCTCAAATTCTAAATTTAATGCAATATAATTTGAATCATGTATATTTGTTAGGTTTTGAAGAATATTTGGCTAATAATTGAACCATGCATTTCACTATTCAGCCATACTTTTTTTTTCTTTTCGAATGTAAAAGGGATATACTAAAAAAAGGTTATGAAATAAAATAATAATAATAATA

mRNA sequence

TTTTTTATTATATATATTATAAATATTTGGTAAAATTTACTATTTTTTATATTTTAGAATATAAACTCTATAGTTTTTTTTATTGACTATAATGTTAATTTCATAAAGTTTTGAGGCCCAAACGTGTTAAAATTAAAGAGAGAAGAAAACTGAACAAAATTCGACGCGGGCGGCCGCGGAATCTTCGTCTTCTCGCACTCTGAGCTTTCAGTAAATCCGAAACTCAAAACCTCTGTTGTTCGTGGTGGCGACAATGGCTGCTAACAACAATAATGGGGATATCCTAATGCTCGAAGCTCCACCGCAGCCATCTCAACCAGCTTGGCGCGTTTCTGCAGATGCGGAGGTTATCGACGCTTTGCCCTACATCGACGACGACTATGCCGACCCAAGGGTCAAAGCAGAGGTTGATCGCTTGGTCGAGGAAGAGATGCGGCGTAGCTCCAAGCGACCCGCCGACTTTCTCAAAGACTTACCTCCTCTTCCTAAGTTCAAATTCGAGGATCATCCGATGCTTGCTAGGGAGTATGAGCGTGTAAGAGCTGGGAGGCCTCCAGTCCCTCTTGACGTTGCAAGATATAAATTAGAGACACCACCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAAAGCTCAATGCTTACTCCGTCATCAAGTGCTGAGGCTGGAAAATTTGGATCTGATGTCAAAATATGGCCCTGATATCTGGAAGCAGCACAACAAACAGCTGGAAGCACTTCTATCAAGAATGCAAAAATTAGCTCAGGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAACAAAACGCTGCATATGAGCTTCATGCTCTATCCACGCAATGGAAGGAGCTTTGTGAGAAAAATATGGAAATCCAAGTGGCATGCTTTCAATTAGAGGGTCAAATACAGGAATTGAGGAGAGAGGCAGCAGAAAAGGGCTGGAATTTGGAAGTCAATGTAGAAAATGGTTCTGTTTCCCTTCCAGTATCATAAGGGGAGCGTCCTAACCATGGTTTTTGCTACTCAAAAGTAAAGACCCCCAACGTCTTTTGTTGCCGTTATGGTATGCCTACATGGAAGATGAGTTAGATTTCTGCTTATTATAAGAGGTTGGTTGCTTTTCTTGGCCTCCAAAGTTTGTGTCATTTTCAAATTTTATATTGAATTGATTTGTATCTGTACCTTCAGTGAAGTAATTTGAAAACACCTACTTCTGCTAACCGTGTTACTTGGTTACTCTCTGACTTGAATATAGATTATTGTGTAAAAATTGTTTAACCCAGACTATCTATCAAATGGTTGATATTTGATTAATTATTCCGAAATAAACCACTAGACAGATTTAATTTAGAGAGATTTATTTACGACCTTCTGTTCTATAGGTTGTACTCCTTGAGTTCTAAGGAAGCTAGAGAGATTTCTTTTGCTGGGGCAAATGGCAGTGGATATTTTAGCCAAGTCTAAACATTTTTTTTTCACTTGGACTGATATTGATGATCATTTTTTCAAACTTAAAGAAATCCAATCAATCGATAAGTATGGTTCGAATTGATTCTAGATATAGCAGATAAAATGTGGCTTCTTAATGTTAAAACCAGCTGTTCAATCCGGATTTGTGCTGTTAAGACTTTTAAAATAATGTCTATAAGTGTTGTGTGTGTATAGCTTTGCGTATTACGTCTAAAGTACTTTGATGCTTAAGATAGTACATAGCTTGTCTACTTAAGTAGCGAATACTATTTCCACTATTAGTGTGTCGCGTATTGTATGGTGCACATGTTAGTGAAGTGCGACAAGGAAAATGCCACCGTTGCGCTCAATAGGCAATCTTACACTTTGACTTGGCCTAATTATCTAATGCTTTTCATTGTCAATTTTGTCTTAGCTGTGGGTTGGAAGGACGATGTTGCTTTGCATAGTTATTGAGCACTAGAATTGATTGAATAGAACATAGTTCAATTCTTTGAGTATAATGTAAGTCGAACCATATAGCTCAAATTCTAAATTTAATGCAATATAATTTGAATCATGTATATTTGTTAGGTTTTGAAGAATATTTGGCTAATAATTGAACCATGCATTTCACTATTCAGCCATACTTTTTTTTTCTTTTCGAATGTAAAAGGGATATACTAAAAAAAGGTTATGAAATAAAATAATAATAATAATA

Coding sequence (CDS)

ATGGCTGCTAACAACAATAATGGGGATATCCTAATGCTCGAAGCTCCACCGCAGCCATCTCAACCAGCTTGGCGCGTTTCTGCAGATGCGGAGGTTATCGACGCTTTGCCCTACATCGACGACGACTATGCCGACCCAAGGGTCAAAGCAGAGGTTGATCGCTTGGTCGAGGAAGAGATGCGGCGTAGCTCCAAGCGACCCGCCGACTTTCTCAAAGACTTACCTCCTCTTCCTAAGTTCAAATTCGAGGATCATCCGATGCTTGCTAGGGAGTATGAGCGTGTAAGAGCTGGGAGGCCTCCAGTCCCTCTTGACGTTGCAAGATATAAATTAGAGACACCACCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAAAGCTCAATGCTTACTCCGTCATCAAGTGCTGAGGCTGGAAAATTTGGATCTGATGTCAAAATATGGCCCTGATATCTGGAAGCAGCACAACAAACAGCTGGAAGCACTTCTATCAAGAATGCAAAAATTAGCTCAGGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAACAAAACGCTGCATATGAGCTTCATGCTCTATCCACGCAATGGAAGGAGCTTTGTGAGAAAAATATGGAAATCCAAGTGGCATGCTTTCAATTAGAGGGTCAAATACAGGAATTGAGGAGAGAGGCAGCAGAAAAGGGCTGGAATTTGGAAGTCAATGTAGAAAATGGTTCTGTTTCCCTTCCAGTATCATAA

Protein sequence

MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNLEVNVENGSVSLPVS
Homology
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BLAST of CsGy1G006890 vs. NCBI nr
Match: XP_004137495.1 (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] >KGN64160.1 hypothetical protein Csa_1G042680 [Cucumis sativus])

HSP 1 Score: 511.5 bits (1316), Expect = 1.6e-141
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSLPVS 257
           NLEVNVENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of CsGy1G006890 vs. NCBI nr
Match: XP_008462680.1 (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo])

HSP 1 Score: 509.2 bits (1310), Expect = 8.0e-141
Identity = 255/256 (99.61%), Postives = 255/256 (99.61%), Query Frame = 0 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPK KFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSLPVS 257
           NLEVNVENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of CsGy1G006890 vs. NCBI nr
Match: XP_023518986.1 (pre-mRNA-splicing factor SPF27 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 493.4 bits (1269), Expect = 4.6e-136
Identity = 245/256 (95.70%), Postives = 252/256 (98.44%), Query Frame = 0 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA NNN+GDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLL+HQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVAC Q+EGQIQELR EAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240

Query: 241 NLEVNVENGSVSLPVS 257
           NLEVNVENGSVS P+S
Sbjct: 241 NLEVNVENGSVSFPMS 256

[Close]
BLAST of CsGy1G006890 vs. NCBI nr
Match: XP_022923949.1 (pre-mRNA-splicing factor SPF27 homolog [Cucurbita moschata] >XP_022923950.1 pre-mRNA-splicing factor SPF27 homolog [Cucurbita moschata])

HSP 1 Score: 492.3 bits (1266), Expect = 1.0e-135
Identity = 245/256 (95.70%), Postives = 251/256 (98.05%), Query Frame = 0 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA NNN+GDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLL+HQVLRLENL+LMSKY PDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYAPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVAC Q+EGQIQELR EAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240

Query: 241 NLEVNVENGSVSLPVS 257
           NLEVNVENGSVS PVS
Sbjct: 241 NLEVNVENGSVSFPVS 256

[Close]
BLAST of CsGy1G006890 vs. NCBI nr
Match: XP_023001174.1 (pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima] >XP_023001176.1 pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima] >XP_023001177.1 pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima])

HSP 1 Score: 488.8 bits (1257), Expect = 1.1e-134
Identity = 244/256 (95.31%), Postives = 250/256 (97.66%), Query Frame = 0 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA NNN+GDILMLEAPP PSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAINNNSGDILMLEAPPLPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLL+HQVLRLENL+LMSKYG DIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGSDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVAC Q+EGQIQELR EAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240

Query: 241 NLEVNVENGSVSLPVS 257
           NLEVNVENGSVS PVS
Sbjct: 241 NLEVNVENGSVSFPVS 256

[Close]
BLAST of CsGy1G006890 vs. TAIR10
Match: AT3G18165.1 (modifier of snc1,4)

HSP 1 Score: 331.3 bits (848), Expect = 5.4e-91
Identity = 163/244 (66.80%), Postives = 205/244 (84.02%), Query Frame = 0 

Query: 6   NNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65
           NNGD+LMLEA P+ ++P W  +A+AEVIDALPYIDDDY +P +K+EVDRLVEEEMRRSSK
Sbjct: 4   NNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSSK 63

Query: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDV-ARYKLETPPPNKKNDETA 125
           +PADFLKDLPPLPKF F++ P+L +EYERVRAG+PPV +D  +RYKLE PP NK+ND+ A
Sbjct: 64  KPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDAA 123

Query: 126 WKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEK 185
           WKQ LQK Q  L+ +++ LENL+LMSK GP++W+Q+N +LE  L+RMQ+LAQEQNE+IEK
Sbjct: 124 WKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEK 183

Query: 186 VNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNLEV 245
           VNRERK+HQQ  +YEL+ALS +W++LC KNMEIQ AC  LE QI   ++EAAE+GWNLE 
Sbjct: 184 VNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLEE 243

Query: 246 NVEN 249
            +EN
Sbjct: 244 KLEN 246

[Close]
BLAST of CsGy1G006890 vs. Swiss-Prot
Match: sp|Q949S9|SPF27_ARATH (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 PE=1 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 9.8e-90
Identity = 163/244 (66.80%), Postives = 205/244 (84.02%), Query Frame = 0 

Query: 6   NNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65
           NNGD+LMLEA P+ ++P W  +A+AEVIDALPYIDDDY +P +K+EVDRLVEEEMRRSSK
Sbjct: 4   NNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSSK 63

Query: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDV-ARYKLETPPPNKKNDETA 125
           +PADFLKDLPPLPKF F++ P+L +EYERVRAG+PPV +D  +RYKLE PP NK+ND+ A
Sbjct: 64  KPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDAA 123

Query: 126 WKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEK 185
           WKQ LQK Q  L+ +++ LENL+LMSK GP++W+Q+N +LE  L+RMQ+LAQEQNE+IEK
Sbjct: 124 WKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEK 183

Query: 186 VNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWNLEV 245
           VNRERK+HQQ  +YEL+ALS +W++LC KNMEIQ AC  LE QI   ++EAAE+GWNLE 
Sbjct: 184 VNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLEE 243

Query: 246 NVEN 249
            +EN
Sbjct: 244 KLEN 246

[Close]
BLAST of CsGy1G006890 vs. Swiss-Prot
Match: sp|Q6PBE2|SPF27_XENTR (Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis OX=8364 GN=bcas2 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-27
Identity = 73/212 (34.43%), Postives = 116/212 (54.72%), Query Frame = 0 

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y    V+     LVEEE RR   RP        P P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYDAQGVREAAAALVEEETRR--YRPTKNYLSYLPTPDYSAFETEIMRNE 71

Query: 92  YERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSK 151
           +ER+ + +P   L + RY+L  P   ++ND TAW++ +  +   L HQ +R+ENL+LMS+
Sbjct: 72  FERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 131

Query: 152 YGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELC 211
           +G + WK +N+ L  ++   QK  Q+  +KI+ +N +RK  Q  A   L  + + W  L 
Sbjct: 132 HGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLREMESTWVSLV 191

Query: 212 EKNMEIQVACFQLEGQIQELRREAAEKGWNLE 244
            KN EI+ A  Q+E ++ +L+  + E   N+E
Sbjct: 192 SKNYEIERAIVQMENEVYQLKERSGENKENIE 221

[Close]
BLAST of CsGy1G006890 vs. Swiss-Prot
Match: sp|Q5RKQ0|SPF27_DANRE (Pre-mRNA-splicing factor SPF27 OS=Danio rerio OX=7955 GN=bcas2 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-27
Identity = 71/206 (34.47%), Postives = 110/206 (53.40%), Query Frame = 0 

Query: 33  IDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREY 92
           +DALPY D  Y    V+     LVEEE RR   RP        P P F   +  ++  E+
Sbjct: 13  VDALPYFDQGYDATGVREAAAALVEEETRR--YRPTKNYLSYLPTPDFSAFETEIMRNEF 72

Query: 93  ERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSKY 152
           ER+ A +P   L + RY+L  P   +KND TAW+  +  +   L HQ +R+ENL+LM++Y
Sbjct: 73  ERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQY 132

Query: 153 GPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELCE 212
           G + WK  N  L  ++   QK  Q   ++I+ +N +RK  Q     +L  L + W  L  
Sbjct: 133 GTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRKNDQLAGGAKLRELESNWVSLVS 192

Query: 213 KNMEIQVACFQLEGQIQELRREAAEK 239
           KN EI+ A  QLE ++ +++++  ++
Sbjct: 193 KNYEIERAIVQLENEVAQMKQQQGDE 216

[Close]
BLAST of CsGy1G006890 vs. Swiss-Prot
Match: sp|O75934|SPF27_HUMAN (Pre-mRNA-splicing factor SPF27 OS=Homo sapiens OX=9606 GN=BCAS2 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.3e-27
Identity = 72/206 (34.95%), Postives = 113/206 (54.85%), Query Frame = 0 

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y  P V+     LVEEE RR   RP          P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRR--YRPTKNYLSYLTAPDYSAFETDIMRNE 71

Query: 92  YERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSK 151
           +ER+ A +P   L + RY+L  P   +KND TAW++ +  +   L HQ +R+ENL+LMS+
Sbjct: 72  FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 131

Query: 152 YGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELC 211
           +G + WK +N+ L  ++   QK  Q+  + I+ +N +RK  Q  A  +L  + + W  L 
Sbjct: 132 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLV 191

Query: 212 EKNMEIQVACFQLEGQIQELRREAAE 238
            KN EI+    QLE +I +++++  E
Sbjct: 192 SKNYEIERTIVQLENEIYQIKQQHGE 215

[Close]
BLAST of CsGy1G006890 vs. Swiss-Prot
Match: sp|Q9D287|SPF27_MOUSE (Pre-mRNA-splicing factor SPF27 OS=Mus musculus OX=10090 GN=Bcas2 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.3e-27
Identity = 72/206 (34.95%), Postives = 113/206 (54.85%), Query Frame = 0 

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y  P V+     LVEEE RR   RP          P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRR--YRPTKNYLSYLTAPDYSAFETDIMRNE 71

Query: 92  YERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQKAQCLLRHQVLRLENLDLMSK 151
           +ER+ A +P   L + RY+L  P   +KND TAW++ +  +   L HQ +R+ENL+LMS+
Sbjct: 72  FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 131

Query: 152 YGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKELC 211
           +G + WK +N+ L  ++   QK  Q+  + I+ +N +RK  Q  A  +L  + + W  L 
Sbjct: 132 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLV 191

Query: 212 EKNMEIQVACFQLEGQIQELRREAAE 238
            KN EI+    QLE +I +++++  E
Sbjct: 192 SKNYEIERTIVQLENEIYQIKQQHGE 215

[Close]
BLAST of CsGy1G006890 vs. TrEMBL
Match: tr|A0A0A0LQG2|A0A0A0LQG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042680 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 1.1e-141
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSLPVS 257
           NLEVNVENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of CsGy1G006890 vs. TrEMBL
Match: tr|A0A1S3CHH7|A0A1S3CHH7_CUCME (pre-mRNA-splicing factor SPF27 homolog OS=Cucumis melo OX=3656 GN=LOC103500959 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 5.3e-141
Identity = 255/256 (99.61%), Postives = 255/256 (99.61%), Query Frame = 0 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPK KFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEVNVENGSVSLPVS 257
           NLEVNVENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]
BLAST of CsGy1G006890 vs. TrEMBL
Match: tr|A0A2I4HMY7|A0A2I4HMY7_9ROSI (pre-mRNA-splicing factor SPF27 homolog OS=Juglans regia OX=51240 GN=LOC109019629 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.1e-101
Identity = 184/251 (73.31%), Postives = 218/251 (86.85%), Query Frame = 0 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA +++NG+ILM+EAPPQPS P W  S+ AE+IDALPYID DY + RVK EVDRLVEEEM
Sbjct: 1   MANHDSNGEILMIEAPPQPSAPTWPGSSSAELIDALPYIDGDYGNARVKEEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSSK+PADFLKDLPPLPKF FE++PM+AREYERVRAG+PPVPLD +RY LE PP NK+N
Sbjct: 61  RRSSKKPADFLKDLPPLPKFNFENNPMIAREYERVRAGKPPVPLDRSRYNLEPPPMNKRN 120

Query: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQKAQCLL++Q++ LENLDLM KYGPD+WKQ  ++LE  LSR QKLAQEQ E
Sbjct: 121 DETAWKQTLQKAQCLLQYQMISLENLDLMVKYGPDLWKQFIQRLEVFLSRTQKLAQEQTE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240
           KIE VNRERK+HQQN AYEL ALS QWKELC+KN++IQ AC  +E  I+ELR+EA+E+GW
Sbjct: 181 KIETVNRERKYHQQNTAYELSALSIQWKELCQKNIQIQTACTTIENHIEELRKEASERGW 240

Query: 241 NLEVNVENGSV 252
           NLE +++NGSV
Sbjct: 241 NLEADLQNGSV 251

[Close]
BLAST of CsGy1G006890 vs. TrEMBL
Match: tr|A0A067KSC7|A0A067KSC7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05347 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 2.4e-101
Identity = 185/252 (73.41%), Postives = 219/252 (86.90%), Query Frame = 0 

Query: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           M    N+ DILMLEAPP+PS+P W  S +AE++DALPYIDDDY  P VKAEVDRLVEEEM
Sbjct: 1   MTTTGNSSDILMLEAPPEPSRP-WSNSFNAEIVDALPYIDDDYGHPSVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYK-LETPPPNKK 120
           RRS K+PADFLKDLPPL KF FE++PMLA+EYERVRAG+PP  LD +RY  L+ PP NK 
Sbjct: 61  RRSHKKPADFLKDLPPLQKFSFENYPMLAKEYERVRAGKPPSTLDFSRYSHLDLPPANKM 120

Query: 121 NDETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQN 180
           N+ETAWKQ LQKA+CLL+HQV+RLENLDL+SKYGP++W QHN+QLEA+LSRMQKLA+EQN
Sbjct: 121 NEETAWKQALQKAECLLQHQVIRLENLDLISKYGPNVWIQHNQQLEAMLSRMQKLAREQN 180

Query: 181 EKIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKG 240
           EKIE VNRERK+HQQN AYE+ ALS QWKELC+KN+EIQ AC ++E QI+EL++EAAE+G
Sbjct: 181 EKIEAVNRERKYHQQNTAYEMSALSMQWKELCQKNIEIQAACTKIEMQIEELKKEAAERG 240

Query: 241 WNLEVNVENGSV 252
           WNLE N+ENGSV
Sbjct: 241 WNLEANIENGSV 251

[Close]
BLAST of CsGy1G006890 vs. TrEMBL
Match: tr|B9IE93|B9IE93_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G041800v3 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 6.6e-99
Identity = 179/250 (71.60%), Postives = 221/250 (88.40%), Query Frame = 0 

Query: 3   ANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRR 62
           +N+ NGD+LMLEA P+ S+P W  S++AE+IDALPYIDDDY +P VKAEVDRLVEEEMRR
Sbjct: 4   SNSANGDMLMLEAAPEASRP-WSTSSNAEIIDALPYIDDDYGNPSVKAEVDRLVEEEMRR 63

Query: 63  SSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYK-LETPPPNKKND 122
           SSK+P+DFLK+LPP+PKF FE++PMLA+EYERVRAGRPPV LD +RY  L+ P  NK ND
Sbjct: 64  SSKKPSDFLKELPPVPKFTFENYPMLAKEYERVRAGRPPVTLDFSRYSHLDLPAANKMND 123

Query: 123 ETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEK 182
           ETAWKQ LQ+AQ LL+HQV+RLENL+LMSKYGP++W QHN+QLE +L+R QKLA+EQNEK
Sbjct: 124 ETAWKQALQRAQRLLQHQVIRLENLELMSKYGPEVWIQHNRQLETMLTRTQKLAREQNEK 183

Query: 183 IEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWN 242
           IE VNRERK+HQQN AYEL+ALS QWKELC+KN+EIQ AC ++E QI+EL+RE++E+GWN
Sbjct: 184 IEAVNRERKYHQQNTAYELNALSAQWKELCQKNIEIQEACIKIENQIEELKRESSERGWN 243

Query: 243 LEVNVENGSV 252
           +E N+ENGS+
Sbjct: 244 VEANIENGSL 252

The following BLAST results are available for this feature:
BLAST of CsGy1G006890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137495.11.6e-141100.00PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] >KGN64160.1 ... [more]
XP_008462680.18.0e-14199.61PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo][more]
XP_023518986.14.6e-13695.70pre-mRNA-splicing factor SPF27 homolog [Cucurbita pepo subsp. pepo][more]
XP_022923949.11.0e-13595.70pre-mRNA-splicing factor SPF27 homolog [Cucurbita moschata] >XP_022923950.1 pre-... [more]
XP_023001174.11.1e-13495.31pre-mRNA-splicing factor SPF27 homolog [Cucurbita maxima] >XP_023001176.1 pre-mR... [more]
BLAST of CsGy1G006890 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18165.15.4e-9166.80modifier of snc1,4[more]
BLAST of CsGy1G006890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q949S9|SPF27_ARATH9.8e-9066.80Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 P... [more]
sp|Q6PBE2|SPF27_XENTR3.1e-2734.43Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis OX=8364 GN=bcas2 PE=2 SV=1[more]
sp|Q5RKQ0|SPF27_DANRE4.1e-2734.47Pre-mRNA-splicing factor SPF27 OS=Danio rerio OX=7955 GN=bcas2 PE=2 SV=1[more]
sp|O75934|SPF27_HUMAN5.3e-2734.95Pre-mRNA-splicing factor SPF27 OS=Homo sapiens OX=9606 GN=BCAS2 PE=1 SV=1[more]
sp|Q9D287|SPF27_MOUSE5.3e-2734.95Pre-mRNA-splicing factor SPF27 OS=Mus musculus OX=10090 GN=Bcas2 PE=1 SV=1[more]
BLAST of CsGy1G006890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQG2|A0A0A0LQG2_CUCSA1.1e-141100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042680 PE=4 SV=1[more]
tr|A0A1S3CHH7|A0A1S3CHH7_CUCME5.3e-14199.61pre-mRNA-splicing factor SPF27 homolog OS=Cucumis melo OX=3656 GN=LOC103500959 P... [more]
tr|A0A2I4HMY7|A0A2I4HMY7_9ROSI1.1e-10173.31pre-mRNA-splicing factor SPF27 homolog OS=Juglans regia OX=51240 GN=LOC109019629... [more]
tr|A0A067KSC7|A0A067KSC7_JATCU2.4e-10173.41Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_05347 PE=4 SV=1[more]
tr|B9IE93|B9IE93_POPTR6.6e-9971.60Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G041800v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR008409SPF27
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009870 defense response signaling pathway, resistance gene-dependent
biological_process GO:0010204 defense response signaling pathway, resistance gene-independent
biological_process GO:0042742 defense response to bacterium
biological_process GO:0050832 defense response to fungus
biological_process GO:0006397 mRNA processing
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0000974 Prp19 complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G006890.1CsGy1G006890.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 157..195
NoneNo IPR availableCOILSCoilCoilcoord: 214..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
IPR008409Pre-mRNA-splicing factor SPF27PFAMPF05700BCAS2coord: 31..237
e-value: 9.5E-74
score: 247.4
IPR008409Pre-mRNA-splicing factor SPF27PANTHERPTHR13296BCAS2 PROTEINcoord: 22..243

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G006890Cla018468Watermelon (97103) v1cgybwmB064
CsGy1G006890Csa1G042680Cucumber (Chinese Long) v2cgybcuB001
CsGy1G006890MELO3C002120Melon (DHL92) v3.5.1cgybmeB022
CsGy1G006890ClCG04G010780Watermelon (Charleston Gray)cgybwcgB053
CsGy1G006890CSPI01G07080Wild cucumber (PI 183967)cgybcpiB001
CsGy1G006890CmaCh13G010010Cucurbita maxima (Rimu)cgybcmaB073
CsGy1G006890CmaCh18G000590Cucurbita maxima (Rimu)cgybcmaB085
CsGy1G006890CmoCh13G010370Cucurbita moschata (Rifu)cgybcmoB067
CsGy1G006890CmoCh18G000460Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G006890Lsi02G002200Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G006890Cp4.1LG20g01510Cucurbita pepo (Zucchini)cgybcpeB069
CsGy1G006890Cp4.1LG09g11170Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G006890MELO3C002120.2Melon (DHL92) v3.6.1cgybmedB020
CsGy1G006890CsaV3_1G007020Cucumber (Chinese Long) v3cgybcucB002
CsGy1G006890Cla97C04G077600Watermelon (97103) v2cgybwmbB053
CsGy1G006890Bhi08G001062Wax gourdcgybwgoB025
CsGy1G006890Carg04837Silver-seed gourdcarcgybB0393
CsGy1G006890Carg22734Silver-seed gourdcarcgybB0518
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G006890Silver-seed gourdcarcgybB0595
CsGy1G006890Cucumber (Chinese Long) v3cgybcucB003
CsGy1G006890Watermelon (97103) v2cgybwmbB078
CsGy1G006890Wax gourdcgybwgoB090
CsGy1G006890Cucumber (Gy14) v2cgybcgybB002
CsGy1G006890Cucurbita maxima (Rimu)cgybcmaB030
CsGy1G006890Cucurbita moschata (Rifu)cgybcmoB029
CsGy1G006890Cucurbita pepo (Zucchini)cgybcpeB128
CsGy1G006890Bottle gourd (USVL1VR-Ls)cgyblsiB069
CsGy1G006890Melon (DHL92) v3.5.1cgybmeB052
CsGy1G006890Melon (DHL92) v3.6.1cgybmedB046
CsGy1G006890Watermelon (Charleston Gray)cgybwcgB080
CsGy1G006890Watermelon (97103) v1cgybwmB096
CsGy1G006890Wild cucumber (PI 183967)cgybcpiB005