Cp4.1LG20g01510 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG20g01510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPre-mRNA-splicing factor SPF27
LocationCp4.1LG20 : 799336 .. 802689 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGTAAGTCGAAATGGAAGAGGGAAACCCCAATTATATTTAGCGAAGCGGGCCGCGGAATCTCAATCTTCTTGAACCTGAGCTTCCTGTAAATCTAAAGCTCAAAACCTTTGTTGCTTGTTGTTGCTTGTTGTTGTGACAATGGCGATCAACAACAATAGCGGGGATATCCTGATGCTCGAGGCTCCACCGCAGCCATCTCAACCAGCGTGGCGCGTTTCTGCAGATGCGGAGGTAATCGACGCCTTGCCCTACATCGACGATGACTATGCGGACCCAAGGGTCAAAGCAGAGGTCGATCGATTAGTGGAGGAAGAGATGCGGCGCAGCTCCAAGCGACCTGCTGACTTTCTCAAAGACTTGCCTCCTCTTCCCAAGTTCAAATTTGAGGTAGGTTAGACTGCAATTTCATTTCCCGCCGGAGCTTCTTCTAGGTTACGCACTTGTAGTTCCGCTTGATTTTATAGGTTATCATGCCTGAAAGAACGAATTACTTGTTCTCACTGGTTTTATTTGATAGACAGTTACTAATGCCGAAACTGGAAGTGTTTAGAAGCTTCATCTGCTAGTTTTCTTCCAAAACATCCTCTATTTGTTTTCTCGAAAACGAGATGAAAAAATTCGAATCAAAATTAATCGTTCGACAAGAACATAGGATATGGGCACACTGCTTATCCTCAAGTCACAGTGTGTCATCCAATGAATATATGACGCGCTACTCTACATAAGTTATTTTGCCACTACATTGGATAGATCTTGAAATTATTACGAAGTGTGATAATATTAGCAATAGTCTATTCAACTGACGTAGTTTGAACTCAGGATCATCCAATGCTTGCGAGAGAGTATGAACGTGTAAGAGCTGGGAGGCCTCCAATGCCTCTCGATGTTGCTAGATATAAATTAGAGACACCGCCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAGAGCTCAATGCCTACTCCAGCATCAAGTGCTGAGGTGAAGTTTAGCATGTTAAAGTTGTTCCTGGCATTTAAGCTTTGTATTTTTGGAAAACTTGATTTTATGGAGAACAGTTAGAGTTGGCTACTTGAACTCATACAGTTCTTCTAATATCTGCCACACATAGTTAACATTTCTATGCCTTTTCTTGGTTGCAGTTGGTTTCTCATATCTAGTTTGTGTACCAATGAGCCATGACTGTGAGAGGTGTAATTTATAAAATTTTGATAAGAAAAGACATAATTCAGAAGATTATACGCCCAAACATGAAATTAAACATTAGAGAGGTTTTGATGATTCATTAGGAAATAATAAGAATATGGTAATCTGACGACTGGTGATGCTGTTGTCTCATACTGCAGGCTGGAAAATTTGGAACTGATGTCAAAATATGGCCCTGATATCTGGAAGCAACACAACAAACAGTTGGAAGCACTTCTATCAAGGTTTGTTACCATATTTCGTTTTGATGTCTTATATTATGTGTGTACTAGTTTTGTATTTATGTTGTCAAATATGATTCCAAGTCAAATCATTTGGCTTATCTCGTTCTATAGTGTAAATATGATTTCTGAATAAAGTGAACATGAAAGTATTAAGTACATCTGTGATCTGACCAAAGTAGACGTATATAATTGTTAATATATTGTCATGATGTTATCAGAATGCAAAAATTAGCTCAAGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAAGTAAGTAGCATCCCTGTAATTCATATTTCAATGGGGCAGAGGTCAATTCTTTGGAACCTTTGGTTGATTATTTATGCGATGATCAGCAAAACGCTGCATATGAGCTTCATGCTTTGTCCACACAATGGAAGGAGCTGTGCGAGAAAAATATGGAAATCCAAGTGGCATGCTCTCAAATAGAGGGTCAAATCCAGGAACTAAGGAGTGAGGCGGCAGAAAAGTAATCTTGCCTTCTTCTATTTAATCTATTTTTGTCCTACATATGTTTGGCATGTTTAGAACTGATCTGTGGGTTATGATTCCAGAGGCTGGAATTTGGAAGTCAATGTAGAGAATGGATCTGTTTCGTTTCCAATGTCATAAGGTATGCTTTAGATGCCATCTCTTGTTTTTAATATCTGACATTTAACCCAAAGTTCACTTCCATTTCTCCTCTTATATTAGAATTTCTAACTTAACACTACTTGTACCATGTTTGCCTTTTTACTGTTTATTTCTTTTCAATATCTCGTGTTAAAATGATATGTCATTAGTTATCTGTCTAAAAATATCATGTGTTACTGTTTTCTGATTACCATCTGCGTTTATCCGTCTTCGAGTCAATTTTGATTTTTAGCAATCTCATGGCACAAACCGGAATGAATTCTCTTCTGCCATTAATGTGCTTATGTCTTTCCTCTCCCAACATATGAGAAAATACAATAATTCAATCTAAATTTCTCAAGTTGGCAAGGAGATGGCTCAGTTTAGTGGTGGCAGAAAATCTAACCCTTTAAAAAGAGTAGAGTTCGTTTTTCTTTCATTTTCTTCTTCTGACCTGGGAGATGAAAGAAAATAAAAGAGACCAAGTGAAAGAAGGAACAAAGATAAAGGGGTAAACCAATGTGATCATGACATTGTAGGTGCTTACGATGGAAAGGAATCGGTTGGTTTGGGTTGCGAAGTCCCTTCTTTTTTTATGGGTCATCTCGTGCTTTTACCTTTTACTGGGTCATTAATACATCCATTGGAGTCGATTCTTTCTTCCACAAAATGTATCCCACAGATTATGACATGATTTTTTTGACATCTCAGTGGAATAGGGGACCGTCCTAACCATGGCTTTGCTGCTCAGAAGTAAAGACTGCCAACGTCTTCTGTTGCTGTTACCATATGCCTACATGGAAGATGAGTTAGTTTTCTGCTTATATGGGTCAGGCTGGTTGGTTGCCTTTCTTGACCTCCAAGGTCCGCCTTTAGTCTTTTTCAAAATTTACATTGATTTTACTGTATCTGTACCTTTAGTGAAGTAATTCGAAATACCTTTTAGCCATTTTCTGCTTGCTAACCACGTTATTGGATCACTCTCCTTATTTACATTTAATATATATTATGTATGTCATTGAACTACCAAACTGTCAATCAAATGGATAATATTTGATATTAATTCAAATCCAAATTCTTTCAAAATAAACCATGGTAGGAGAGACTAGAGAGATTTATTTGATTTATTCTATAGGCTTTTTTTATATAAGAACATGTTACCCTTCATGTCAATATACTTCAATTGTTACTCCAATTTGTATGTTGATGTTATTATTTATAAATCATGTTTTTATTCCTTTTAATTTTTAGATATC

mRNA sequence

TGAGTAAGTCGAAATGGAAGAGGGAAACCCCAATTATATTTAGCGAAGCGGGCCGCGGAATCTCAATCTTCTTGAACCTGAGCTTCCTGTAAATCTAAAGCTCAAAACCTTTGTTGCTTGTTGTTGCTTGTTGTTGTGACAATGGCGATCAACAACAATAGCGGGGATATCCTGATGCTCGAGGCTCCACCGCAGCCATCTCAACCAGCGTGGCGCGTTTCTGCAGATGCGGAGGTAATCGACGCCTTGCCCTACATCGACGATGACTATGCGGACCCAAGGGTCAAAGCAGAGGTCGATCGATTAGTGGAGGAAGAGATGCGGCGCAGCTCCAAGCGACCTGCTGACTTTCTCAAAGACTTGCCTCCTCTTCCCAAGTTCAAATTTGAGGATCATCCAATGCTTGCGAGAGAGTATGAACGTGTAAGAGCTGGGAGGCCTCCAATGCCTCTCGATGTTGCTAGATATAAATTAGAGACACCGCCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAGAGCTCAATGCCTACTCCAGCATCAAGTGCTGAGGCTGGAAAATTTGGAACTGATGTCAAAATATGGCCCTGATATCTGGAAGCAACACAACAAACAGTTGGAAGCACTTCTATCAAGAATGCAAAAATTAGCTCAAGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAAAGGCTGGAATTTGGAAGTCAATGTAGAGAATGGATCTGTTTCGTTTCCAATGTCATAAGTGGAATAGGGGACCGTCCTAACCATGGCTTTGCTGCTCAGAAGTAAAGACTGCCAACGTCTTCTGTTGCTGTTACCATATGCCTACATGGAAGATGAGTTAGTTTTCTGCTTATATGGGTCAGGCTGGTTGGTTGCCTTTCTTGACCTCCAAGGTCCGCCTTTAGTCTTTTTCAAAATTTACATTGATTTTACTGTATCTGTACCTTTAGTGAAGTAATTCGAAATACCTTTTAGCCATTTTCTGCTTGCTAACCACGTTATTGGATCACTCTCCTTATTTACATTTAATATATATTATGTATGTCATTGAACTACCAAACTGTCAATCAAATGGATAATATTTGATATTAATTCAAATCCAAATTCTTTCAAAATAAACCATGGTAGGAGAGACTAGAGAGATTTATTTGATTTATTCTATAGGCTTTTTTTATATAAGAACATGTTACCCTTCATGTCAATATACTTCAATTGTTACTCCAATTTGTATGTTGATGTTATTATTTATAAATCATGTTTTTATTCCTTTTAATTTTTAGATATC

Coding sequence (CDS)

ATGGCGATCAACAACAATAGCGGGGATATCCTGATGCTCGAGGCTCCACCGCAGCCATCTCAACCAGCGTGGCGCGTTTCTGCAGATGCGGAGGTAATCGACGCCTTGCCCTACATCGACGATGACTATGCGGACCCAAGGGTCAAAGCAGAGGTCGATCGATTAGTGGAGGAAGAGATGCGGCGCAGCTCCAAGCGACCTGCTGACTTTCTCAAAGACTTGCCTCCTCTTCCCAAGTTCAAATTTGAGGATCATCCAATGCTTGCGAGAGAGTATGAACGTGTAAGAGCTGGGAGGCCTCCAATGCCTCTCGATGTTGCTAGATATAAATTAGAGACACCGCCTCCAAATAAAAAGAATGACGAAACTGCTTGGAAGCAGACACTTCAGAGAGCTCAATGCCTACTCCAGCATCAAGTGCTGAGGCTGGAAAATTTGGAACTGATGTCAAAATATGGCCCTGATATCTGGAAGCAACACAACAAACAGTTGGAAGCACTTCTATCAAGAATGCAAAAATTAGCTCAAGAACAGAATGAGAAGATTGAAAAAGTGAACCGTGAAAGGAAATTCCATCAAAGGCTGGAATTTGGAAGTCAATGTAGAGAATGGATCTGTTTCGTTTCCAATGTCATAAGTGGAATAGGGGACCGTCCTAACCATGGCTTTGCTGCTCAGAAGTAA

Protein sequence

MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQRLEFGSQCREWICFVSNVISGIGDRPNHGFAAQK
BLAST of Cp4.1LG20g01510 vs. Swiss-Prot
Match: SPF27_ARATH (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.2e-69
Identity = 132/203 (65.02%), Postives = 169/203 (83.25%), Query Frame = 1

Query: 6   NSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65
           N+GD+LMLEA P+ ++P W  +A+AEVIDALPYIDDDY +P +K+EVDRLVEEEMRRSSK
Sbjct: 4   NNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSSK 63

Query: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDV-ARYKLETPPPNKKNDETA 125
           +PADFLKDLPPLPKF F++ P+L +EYERVRAG+PP+ +D  +RYKLE PP NK+ND+ A
Sbjct: 64  KPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDAA 123

Query: 126 WKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEK 185
           WKQ LQ+ Q  LQ +++ LENLELMSK GP++W+Q+N +LE  L+RMQ+LAQEQNE+IEK
Sbjct: 124 WKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEK 183

Query: 186 VNRERKFHQR---LEFGSQCREW 205
           VNRERK+HQ+    E  +  +EW
Sbjct: 184 VNRERKYHQQTTSYELNALSQEW 205

BLAST of Cp4.1LG20g01510 vs. Swiss-Prot
Match: SPF27_HUMAN (Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.0e-23
Identity = 67/182 (36.81%), Postives = 102/182 (56.04%), Query Frame = 1

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y  P V+     LVEEE RR   RP          P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY--RPTKNYLSYLTAPDYSAFETDIMRNE 71

Query: 92  YERVRAGRPPMPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLQHQVLRLENLELMSK 151
           +ER+ A +P   L + RY+L  P   +KND TAW++ +  +   L+HQ +R+ENLELMS+
Sbjct: 72  FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 131

Query: 152 YGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQRLEFGSQCRE----WICF 210
           +G + WK +N+ L  ++   QK  Q+  + I+ +N +RK + +L  GS+ RE    W+  
Sbjct: 132 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRK-NMQLTAGSKLREMESNWVSL 190

BLAST of Cp4.1LG20g01510 vs. Swiss-Prot
Match: SPF27_MOUSE (Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.0e-23
Identity = 67/182 (36.81%), Postives = 102/182 (56.04%), Query Frame = 1

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y  P V+     LVEEE RR   RP          P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY--RPTKNYLSYLTAPDYSAFETDIMRNE 71

Query: 92  YERVRAGRPPMPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLQHQVLRLENLELMSK 151
           +ER+ A +P   L + RY+L  P   +KND TAW++ +  +   L+HQ +R+ENLELMS+
Sbjct: 72  FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 131

Query: 152 YGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQRLEFGSQCRE----WICF 210
           +G + WK +N+ L  ++   QK  Q+  + I+ +N +RK + +L  GS+ RE    W+  
Sbjct: 132 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRK-NMQLTAGSKLREMESNWVSL 190

BLAST of Cp4.1LG20g01510 vs. Swiss-Prot
Match: SPF27_PONAB (Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.0e-23
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 1

Query: 32  VIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLARE 91
           V+DALPY D  Y  P V+     LVEEE RR   RP          P +   +  ++  E
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY--RPTKNYLSYLTAPDYSAFETDIMRNE 71

Query: 92  YERVRAGRPPMPLDVARYKLETPPPN-KKNDETAWKQTLQRAQCLLQHQVLRLENLELMS 151
           +ER+ A +P   L + RY+L  PP   KKND TAW++ +  +   L+HQ +R+ENLELMS
Sbjct: 72  FERLAARQPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLELMS 131

Query: 152 KYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQRLEFGSQCRE----WIC 210
           ++G + WK +N+ L  ++   QK  Q+  + I+ +N +RK + +L  GS+ RE    W+ 
Sbjct: 132 QHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRK-NMQLTAGSKLREMESNWVS 191

BLAST of Cp4.1LG20g01510 vs. Swiss-Prot
Match: SPF27_DANRE (Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-22
Identity = 66/181 (36.46%), Postives = 98/181 (54.14%), Query Frame = 1

Query: 33  IDALPYIDDDYADPRVKAEVDRLVEEEMRRSSKRPADFLKDLPPLPKFKFEDHPMLAREY 92
           +DALPY D  Y    V+     LVEEE RR   RP        P P F   +  ++  E+
Sbjct: 13  VDALPYFDQGYDATGVREAAAALVEEETRRY--RPTKNYLSYLPTPDFSAFETEIMRNEF 72

Query: 93  ERVRAGRPPMPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLQHQVLRLENLELMSKY 152
           ER+ A +P   L + RY+L  P   +KND TAW+  +  +   L+HQ +R+ENLELM++Y
Sbjct: 73  ERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQY 132

Query: 153 GPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQRLEFGSQCRE----WICFV 210
           G + WK  N  L  ++   QK  Q   ++I+ +N +RK + +L  G++ RE    W+  V
Sbjct: 133 GTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRK-NDQLAGGAKLRELESNWVSLV 190

BLAST of Cp4.1LG20g01510 vs. TrEMBL
Match: A0A0A0LQG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042680 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 6.8e-102
Identity = 187/194 (96.39%), Postives = 193/194 (99.48%), Query Frame = 1

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA NNN+GDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLL+HQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQR 195
           KIEKVNRERKFHQ+
Sbjct: 181 KIEKVNRERKFHQQ 194

BLAST of Cp4.1LG20g01510 vs. TrEMBL
Match: A0A067KSC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05347 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.9e-75
Identity = 144/195 (73.85%), Postives = 169/195 (86.67%), Query Frame = 1

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           M    NS DILMLEAPP+PS+P W  S +AE++DALPYIDDDY  P VKAEVDRLVEEEM
Sbjct: 1   MTTTGNSSDILMLEAPPEPSRP-WSNSFNAEIVDALPYIDDDYGHPSVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYK-LETPPPNKK 120
           RRS K+PADFLKDLPPL KF FE++PMLA+EYERVRAG+PP  LD +RY  L+ PP NK 
Sbjct: 61  RRSHKKPADFLKDLPPLQKFSFENYPMLAKEYERVRAGKPPSTLDFSRYSHLDLPPANKM 120

Query: 121 NDETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQN 180
           N+ETAWKQ LQ+A+CLLQHQV+RLENL+L+SKYGP++W QHN+QLEA+LSRMQKLA+EQN
Sbjct: 121 NEETAWKQALQKAECLLQHQVIRLENLDLISKYGPNVWIQHNQQLEAMLSRMQKLAREQN 180

Query: 181 EKIEKVNRERKFHQR 195
           EKIE VNRERK+HQ+
Sbjct: 181 EKIEAVNRERKYHQQ 194

BLAST of Cp4.1LG20g01510 vs. TrEMBL
Match: W9RFJ2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017406 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.1e-75
Identity = 144/195 (73.85%), Postives = 166/195 (85.13%), Query Frame = 1

Query: 1   MAINNNSGDILMLEAPPQ-PSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEE 60
           MA NNNSG+ILMLEAPP+ P+ P WRV A+AE++DALPYIDDDYA+P VK EVDRLVEEE
Sbjct: 1   MAANNNSGEILMLEAPPEKPAGPTWRVPANAEIVDALPYIDDDYANPAVKREVDRLVEEE 60

Query: 61  MRRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKK 120
           MRRSSK+P+DFLKDLPP PK  F+DHPMLAREYERV A +PP+ LD  R KLE PP +K+
Sbjct: 61  MRRSSKKPSDFLKDLPPPPKSDFQDHPMLAREYERVHAAKPPVILDFNRDKLEAPPASKR 120

Query: 121 NDETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQN 180
           ND++AWK  LQRAQC LQHQV+RLENL+L  KYGP+ WK HN +LE LLSRMQKLAQEQ 
Sbjct: 121 NDDSAWKLALQRAQCSLQHQVIRLENLDLTVKYGPEAWKHHNGRLEVLLSRMQKLAQEQF 180

Query: 181 EKIEKVNRERKFHQR 195
           EKIE VNRERK+HQ+
Sbjct: 181 EKIETVNRERKYHQQ 195

BLAST of Cp4.1LG20g01510 vs. TrEMBL
Match: A0A0K9RPK4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_048690 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.3e-73
Identity = 138/194 (71.13%), Postives = 166/194 (85.57%), Query Frame = 1

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MAI N +GD+LMLEAPP  ++P W  +++AE+IDALPYIDDDY +P +K EVDRLVEEEM
Sbjct: 1   MAIENVNGDVLMLEAPPDAARP-WASASNAEIIDALPYIDDDYGNPAIKQEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSK+P+DFLKDLPP+PKF FEDHPMLAREYERVRAG+PPMPLD +RY  + PP NK+N
Sbjct: 61  RRSSKKPSDFLKDLPPVPKFNFEDHPMLAREYERVRAGKPPMPLDTSRYIPDAPPLNKQN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQ LQ+AQ LLQHQ +RLENL+LMSKYGPD+WK +N++LEA L+R Q +A E  E
Sbjct: 121 DETAWKQALQKAQRLLQHQEIRLENLDLMSKYGPDVWKHYNQRLEASLTRFQAMAAEHGE 180

Query: 181 KIEKVNRERKFHQR 195
           KIE VNRERK+ Q+
Sbjct: 181 KIETVNRERKYQQQ 193

BLAST of Cp4.1LG20g01510 vs. TrEMBL
Match: A0A151TKA6_CAJCA (Pre-mRNA-splicing factor SPF27 OS=Cajanus cajan GN=KK1_023817 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.0e-73
Identity = 140/191 (73.30%), Postives = 166/191 (86.91%), Query Frame = 1

Query: 4   NNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRS 63
           + ++G++LMLEAPP   +PA   S+DAE+IDALPYIDDDYADPRVK EVDRLVEEEMRRS
Sbjct: 3   DRSNGEVLMLEAPPSYGKPA---SSDAEIIDALPYIDDDYADPRVKLEVDRLVEEEMRRS 62

Query: 64  SKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKNDET 123
           SK+P DFLKD PPLP   F+++PM+AREYERVRAGRPP+ LD +RY+LE PP NK+NDET
Sbjct: 63  SKKPTDFLKDFPPLPNSSFQNYPMIAREYERVRAGRPPVALDRSRYELEMPPANKRNDET 122

Query: 124 AWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIE 183
           AWKQ L RAQ LLQ+Q++R+ENL+LM KYGPD WK HN++LE  LSRMQKLAQEQNEKIE
Sbjct: 123 AWKQALNRAQRLLQYQMMRMENLDLMLKYGPDTWKLHNQRLEVYLSRMQKLAQEQNEKIE 182

Query: 184 KVNRERKFHQR 195
           KVNRERK+HQ+
Sbjct: 183 KVNRERKYHQQ 190

BLAST of Cp4.1LG20g01510 vs. TAIR10
Match: AT3G18165.1 (AT3G18165.1 modifier of snc1,4)

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-70
Identity = 132/203 (65.02%), Postives = 169/203 (83.25%), Query Frame = 1

Query: 6   NSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSSK 65
           N+GD+LMLEA P+ ++P W  +A+AEVIDALPYIDDDY +P +K+EVDRLVEEEMRRSSK
Sbjct: 4   NNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSSK 63

Query: 66  RPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDV-ARYKLETPPPNKKNDETA 125
           +PADFLKDLPPLPKF F++ P+L +EYERVRAG+PP+ +D  +RYKLE PP NK+ND+ A
Sbjct: 64  KPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDAA 123

Query: 126 WKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEK 185
           WKQ LQ+ Q  LQ +++ LENLELMSK GP++W+Q+N +LE  L+RMQ+LAQEQNE+IEK
Sbjct: 124 WKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEK 183

Query: 186 VNRERKFHQR---LEFGSQCREW 205
           VNRERK+HQ+    E  +  +EW
Sbjct: 184 VNRERKYHQQTTSYELNALSQEW 205

BLAST of Cp4.1LG20g01510 vs. NCBI nr
Match: gi|449439443|ref|XP_004137495.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 9.8e-102
Identity = 187/194 (96.39%), Postives = 193/194 (99.48%), Query Frame = 1

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA NNN+GDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLL+HQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQR 195
           KIEKVNRERKFHQ+
Sbjct: 181 KIEKVNRERKFHQQ 194

BLAST of Cp4.1LG20g01510 vs. NCBI nr
Match: gi|659066815|ref|XP_008462680.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo])

HSP 1 Score: 375.9 bits (964), Expect = 4.8e-101
Identity = 186/194 (95.88%), Postives = 192/194 (98.97%), Query Frame = 1

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA NNN+GDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120
           RRSSKRPADFLKDLPPLPK KFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLL+HQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQR 195
           KIEKVNRERKFHQ+
Sbjct: 181 KIEKVNRERKFHQQ 194

BLAST of Cp4.1LG20g01510 vs. NCBI nr
Match: gi|802599707|ref|XP_012072552.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas])

HSP 1 Score: 290.4 bits (742), Expect = 2.7e-75
Identity = 144/195 (73.85%), Postives = 169/195 (86.67%), Query Frame = 1

Query: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           M    NS DILMLEAPP+PS+P W  S +AE++DALPYIDDDY  P VKAEVDRLVEEEM
Sbjct: 1   MTTTGNSSDILMLEAPPEPSRP-WSNSFNAEIVDALPYIDDDYGHPSVKAEVDRLVEEEM 60

Query: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYK-LETPPPNKK 120
           RRS K+PADFLKDLPPL KF FE++PMLA+EYERVRAG+PP  LD +RY  L+ PP NK 
Sbjct: 61  RRSHKKPADFLKDLPPLQKFSFENYPMLAKEYERVRAGKPPSTLDFSRYSHLDLPPANKM 120

Query: 121 NDETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQN 180
           N+ETAWKQ LQ+A+CLLQHQV+RLENL+L+SKYGP++W QHN+QLEA+LSRMQKLA+EQN
Sbjct: 121 NEETAWKQALQKAECLLQHQVIRLENLDLISKYGPNVWIQHNQQLEAMLSRMQKLAREQN 180

Query: 181 EKIEKVNRERKFHQR 195
           EKIE VNRERK+HQ+
Sbjct: 181 EKIEAVNRERKYHQQ 194

BLAST of Cp4.1LG20g01510 vs. NCBI nr
Match: gi|703102926|ref|XP_010097595.1| (hypothetical protein L484_017406 [Morus notabilis])

HSP 1 Score: 288.5 bits (737), Expect = 1.0e-74
Identity = 144/195 (73.85%), Postives = 166/195 (85.13%), Query Frame = 1

Query: 1   MAINNNSGDILMLEAPPQ-PSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEE 60
           MA NNNSG+ILMLEAPP+ P+ P WRV A+AE++DALPYIDDDYA+P VK EVDRLVEEE
Sbjct: 1   MAANNNSGEILMLEAPPEKPAGPTWRVPANAEIVDALPYIDDDYANPAVKREVDRLVEEE 60

Query: 61  MRRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKK 120
           MRRSSK+P+DFLKDLPP PK  F+DHPMLAREYERV A +PP+ LD  R KLE PP +K+
Sbjct: 61  MRRSSKKPSDFLKDLPPPPKSDFQDHPMLAREYERVHAAKPPVILDFNRDKLEAPPASKR 120

Query: 121 NDETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQN 180
           ND++AWK  LQRAQC LQHQV+RLENL+L  KYGP+ WK HN +LE LLSRMQKLAQEQ 
Sbjct: 121 NDDSAWKLALQRAQCSLQHQVIRLENLDLTVKYGPEAWKHHNGRLEVLLSRMQKLAQEQF 180

Query: 181 EKIEKVNRERKFHQR 195
           EKIE VNRERK+HQ+
Sbjct: 181 EKIETVNRERKYHQQ 195

BLAST of Cp4.1LG20g01510 vs. NCBI nr
Match: gi|1009131528|ref|XP_015882890.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Ziziphus jujuba])

HSP 1 Score: 287.0 bits (733), Expect = 3.0e-74
Identity = 145/205 (70.73%), Postives = 169/205 (82.44%), Query Frame = 1

Query: 4   NNNSGDILMLEAPPQ-PSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRR 63
           NNN+G+ILMLEAPPQ P+ P+WR SA+AE+IDALPYIDDDY +P VK EVDRLVEEEMRR
Sbjct: 3   NNNNGEILMLEAPPQQPTGPSWRPSANAEIIDALPYIDDDYGNPVVKKEVDRLVEEEMRR 62

Query: 64  SSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKNDE 123
           S K+P DFLKDLPPLPK  F+D+PMLAREYERVRA +PP+ LD +R KLETPP NK+NDE
Sbjct: 63  SFKKPNDFLKDLPPLPKSNFQDNPMLAREYERVRAAKPPIILDFSRDKLETPPVNKRNDE 122

Query: 124 TAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKI 183
           TAWKQ LQ+AQC  QHQV RLENL++  KYG + WKQHN++LE LLSRMQKLAQE  EKI
Sbjct: 123 TAWKQALQKAQCSFQHQVFRLENLDVTFKYGSEAWKQHNRRLEVLLSRMQKLAQEHFEKI 182

Query: 184 EKVNRERKFHQR---LEFGSQCREW 205
           E VNR+RKFHQ+    E  +   +W
Sbjct: 183 EAVNRDRKFHQQNTAFELNALSAQW 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SPF27_ARATH2.2e-6965.02Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1[more]
SPF27_HUMAN9.0e-2336.81Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1[more]
SPF27_MOUSE9.0e-2336.81Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=1 SV=1[more]
SPF27_PONAB9.0e-2337.70Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1[more]
SPF27_DANRE1.5e-2236.46Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LQG2_CUCSA6.8e-10296.39Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042680 PE=4 SV=1[more]
A0A067KSC7_JATCU1.9e-7573.85Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05347 PE=4 SV=1[more]
W9RFJ2_9ROSA7.1e-7573.85Uncharacterized protein OS=Morus notabilis GN=L484_017406 PE=4 SV=1[more]
A0A0K9RPK4_SPIOL2.3e-7371.13Uncharacterized protein OS=Spinacia oleracea GN=SOVF_048690 PE=4 SV=1[more]
A0A151TKA6_CAJCA3.0e-7373.30Pre-mRNA-splicing factor SPF27 OS=Cajanus cajan GN=KK1_023817 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G18165.11.2e-7065.02 modifier of snc1,4[more]
Match NameE-valueIdentityDescription
gi|449439443|ref|XP_004137495.1|9.8e-10296.39PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus][more]
gi|659066815|ref|XP_008462680.1|4.8e-10195.88PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo][more]
gi|802599707|ref|XP_012072552.1|2.7e-7573.85PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas][more]
gi|703102926|ref|XP_010097595.1|1.0e-7473.85hypothetical protein L484_017406 [Morus notabilis][more]
gi|1009131528|ref|XP_015882890.1|3.0e-7470.73PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR008409SPF27
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009870 defense response signaling pathway, resistance gene-dependent
biological_process GO:0010204 defense response signaling pathway, resistance gene-independent
biological_process GO:0042742 defense response to bacterium
biological_process GO:0050832 defense response to fungus
biological_process GO:0006397 mRNA processing
biological_process GO:0001510 RNA methylation
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0000974 Prp19 complex
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g01510.1Cp4.1LG20g01510.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008409Pre-mRNA-splicing factor SPF27PFAMPF05700BCAS2coord: 31..194
score: 4.6
NoneNo IPR availableunknownCoilCoilcoord: 157..195
scor
NoneNo IPR availablePANTHERPTHR13296BCAS2 PROTEINcoord: 11..193
score: 2.6

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g01510Cp4.1LG09g11170Cucurbita pepo (Zucchini)cpecpeB049