CmoCh18G000460 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G000460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPre-mRNA-splicing factor SPF27-like protein
LocationCmo_Chr18 : 297080 .. 302740 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGAAGAAACTCAATCTTCTCGCACTTGAGCTTCTATGAATCTGAAACTTCTAAGCTCAGTTGCTCGCTGTGGTGGCTATGGCGATTAACAACAATAACGGGGATTTCCTAATGCTCGAAGATCCGCCGCAACCAGCGTGGCGTGTTTCTGCAGATGCGGAGGTAATCGACGCCTTGGCCTACATCGACGACGACGACTATGTAGACCCTAGCAGAGGTCGATCGCTTAGTGGAGGAAGAGATGCGGCGTAGCTCCAAGAGACCGGCCGACTTTCTCAAAGACTTGCCTCCTATTCCCAAGTTCAAATTTGACGTAAGTTAGGTTGCGATTTCCTTTCCCGCCGGAGTTTTCCTCTAGGTTATGCACTTATAGTTCCACCTGATTCTAAGTTTTTATGGGCGAAAGAACAAATTATTATTGTTTTGACTGGATATATTTGATTGAAAGTTGCTAATGCTGAATTTGGAAGTGTTTATAGAAGCCTCATTTGCTGGTTCTGTATTGAAACATCCTCCATAATGTTTACTCGAAAACAAGGTCGAGAGAATCAAATTAAAAATCAATCAAAGAATTAGAATGCCGTATTTTGTTTATCCGGAAGCCACATCATGTGAACCAATGACTATAAGATCCACTACTTGATCTTCTTTGATTTATTTTACCATTACTTAAGATAATTCTTGCAAATGTTACAAAATAGGATAATGTTGACGATAGTTAGTTTGGACTCAGGATCATCCAATGCTTGCCAGAGAGTATGAACGTGTATGAGCTGGGAGGCCTCCCGTGCCTCTCGATGTTGCAAGATACAAATTGGAGATGCCAGCTCCAAATAAAAAGAATGTATTTCTTGGAAGCAGACACTTCAGAAAGCTCAATGCTTACTACGTCATCAAGTGCTGAGGTGAAGTTTTGATATGTTTTTTATTGTTCTGTTAGACGAACACTACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCACACCAATGGAGTTAGTATTCCTCACTTATAAACCGCCTCACACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGATCATTCCTTAAATTAGCCGATGTGGGACTTCCATCATCCAACACCTCCCCTCGAACAAAGTGCGTCTCCCCTTAATCGAGACTCGACTCCTTTGGAGTCTTAGTCATTTTTGACTGCCTTCGAGGAGGGGCTTGGCTCCTTTTCTTTAGGAGTTCTTTGTTCGATATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTAGGGCATGGCTCTGATACCATGTTAGACGAACACTACTCTCCACAATGGTATGATATTGTTCACTTTAAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCACACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGATCATTCCTTAAATTAGCCGATGTGGGACTTCCATCATCCAACACCTCCCCTCGAACAAAGTGCGCCTCCCCTTAATCGAGACTCGACTCCTTTGGAGTCTTAGTCATTTTTTACTGCCTTCGAGGAGGGGCTTGGCTCCTTTTCTTTAGGAGTTCTTTGTTCGATATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTAGGGCATGGCTCTGATACCATGTTAGACGAACACTACTCTCCACAATGGTATGATATTGTTCACTTTAAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCACACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGATCATTCCTTAAATTAGCCGATGTGGGACTTCCATCATCCAACACCTCCCCTCGAACAAAGTGCGTCTCCCCTTAATCGAGACTCGACTCCTTTGGAGTCTTAGTCATTTTTTACTGCCTTCGAGGAGGGGCTTGGCTCCTTTTCTTTAGGAGTTCTTTGTTCGATATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTAGGGCATGGCTCTGATACCATGTTAGACGAACACTACTCTCCACAATGGTATGATATTGTTCACTTTAAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCACACCAATGGAGTTAGTATTCCTCACTTATAAACCCATGATCATTCCTTAAATTAGCCGATGTGGGACTTCCATCATCCAACACCTCCCCTCGAACAAAGTGCGCCTCCCCTTAATCGAGACTCGACTCCTTTGGAGTCTTAGTCATTTTTGACTGCCTTCGAGGAGGGGCTTGGCTCCTTTTCTTTAGGAGTTCTTTGTTCGATATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTAGGGCATGGCTCTGATACCATGTTAGACGAACACTACTCTCCACAATGGTATGATATTGTTCACTTTAAGCATAAGCTCTCATGGTTTTGCTTTGGGCTTCCCCAAAAGGCCTCACACCAATGGAGTTAGTATTCCTCACTTATAAATCCATGATCATTCCCTAGATTAGCCGATGTGGGACTTCCATCATCCAACACTAGCTACTTAAGATTTGTATTTCGAAAATTTTAATTTTATGGAGAACAGTTCGAGTTGGCTGCTTGAACTCATACAGGTCCTGGAATTCCTGCAATACCACGACCTCATGTGTTGGACTACAGTTAGAGTCACCACTAGCCGATATTGTCCTATTTGGACTTTCCCTTTTGGGCTTCCTCTTAAGGTTTTAAAACGCGTCTGTTAGGGGAGGTTTCCACACTCTTATAAAGAGTGCTTCGTTCTACTCCCCAACCGATGTGGGATCTGACAGTTGGTAATGTTGGGTTTCCACACCACAACTATATTATTCTCATCTGAATTGAATTGATTCATTGATCAAGGACTTTATTATTGTTAGATGCTTATCTTTGCACATTGGTGAACGCATTGCAATCCTTACTTTTGACTACATTAGTCAGAAGAAATGAAACATCCAGATGCATTTGCTGCTGTCTATGGCTCTTTCTTTCATAAGCGCCTATGTGCTCTTTCTTAGAACTCAAGTACATGGGAGTACAACTTATAAAATAGATCCTGTACAAGGTCCTGCTTAGGTGCCCTTTAATGTTGCATCCATGCTAGAAACTTTATGTTTGAGGAGGTTATCACTTCACGTTATTTAAGATTGTAAATACCCGAGAACTTTATATTTGGGATCTTCATGATATAATGACAATGAGATTCTGCATGCCCCTGCAACATAAAAGTCGGTGTCTCTCTTTTGGTTAGACATTCCAACTTTCACTTGCTTGTTGTCACATTATCTGAGGCAAGGGCCGTTTCTATCAAAACTAAAAACCATTGCATCACAGGCATTAGCTTTATAGAACACTTGGCCACATTTATGTACATGTCATTTCTTAATGTAGTAAGCAAGAAACTACATCTGACCAACTTGACCATATATGATTGTTACTTATATTGTCTTGTTACTGTCAGATTGCAACAATTAGCTCAAGAACAGAATGAGAAGATGGAAAAAGTAAACCGCGAAAGAAAATTCCATCAAGTGAGTAACATCCCTGTAATTCATATTATTAGTATAAGCTAGAGGTCAATTCTTTGGAATTGTTGGTTGATTTTTTATGCAATGGTCAGCAAAACGCTGCATCTGAGCTTCATGTTTTGTCCACACAATGGAAGGAACTTTGCCAGAAAAATATTGAAATCCGAGTTGTATCCTCTCAAATAGAGGATCAAATCCAGGATCGAAGGAGAGAGGCAGAAAAAAAGTAATCTTGCATTTTTCTTTTTATCTCTTTTACACACATATTTGGAATATTCAGAACCTATCTGTGGGTTATGATTTCAGCTACATGATTTCAGATATGTACAGCAAGAGAGAATACGGAGAATACCAACCGTATATTTTCAAAGCTCTGCCTAATGAATTATATATATGGTTCAATTTACTATATATAGCTATTTAAATAAGTGAATTGGAGCATCCTAACTATGGTTTATGCTTTATGCTGCTCAAAACTAGAGACTGCGGACATCTTTTGTTACTCTTAGCATATGCCGATATGGAAGATGAGTTCGGTTTATGGGAGAAGATTCAGTTGCTTTTGCTAACCACGTTATTGGGTAACTCTCTGATTTTTATTTACATTATGTTTTGTGTATAAATTATTGAACTACCAAACTGTCAATCAAATGGATAATATTTGATGACAATTCAAATTCTTTTGATATAAACTAAGGTACCACAGAGAATTATTTGCTTTGTTCAATAATTGACTCTTGCTTACCACATGTTCAAAGTTTAGTTTTGTTCAATAATAGTCTTGGTTAAATCCCTAAATTCTTACGTATGATCTAAAATTTATTTTCTGTAGGTCCCAACTATAAAAATGTCAATTGAGTTAAGATTGTGTCGAATGGAATTCTCCGTTATAATGTTATTTGAATTCTTACCTAATGAAACAAAATATTCAATTTTCAATTTTTTTAAAAAATAAATTATGTTAAGATCTATTAAACTCAAACTTTGAAAACTAAAGGATTATTAAAATTGAAGCTAAATTAATAACAAAAAAAATGTCTCATAAATACTAATAAATTTTTAAGAAGTCTAAAAAAAAACTTTTTTATAGTTCTAAAATATCCTTAGACTTTCTATAATATTTCAAAAATACACTTTAGCAATAAAAATTACATTAATATCCTTGATCTTTTCTTCAAAATTTGAAACATACCCATCCCATTAATACATTATATTTAAATTACCCTTTTTTTTTTATGTTACTTCAAAAGTTTGTTCATATTTTAAGATTATTTTTAAAATCTAAAAAAAAAAACTTTAGAAGGGCTTTTGAAGCTTAGATAAATTTAATGGTCAATAAAACTGAAATTTTAGAGTTATTAAGAGGGTTGAAATTTGAAATTTGTGCAATCTAACTTTATATTATGGTTTAAATATAATACAAATTTCAAGGATATTTCTATTGTAATACATCATTATTAAAAAGCTGCTTCCAAAGCAATTTAGATTGTGTTCATATTAAAACTTCAATTTCCATTAAATTATATATAGAATAATACTAACTATTTAATTAAAATTATATAGAAAATTGGAAATAACTCAAAACACTACTAAAATCATTGTAGAACCAATTTTTATTCCATATTACAACTAATTTAGATGAACAATAACACAAGCTAATTTAGATAAACAATAACACAAACTAATTTAGATAAACAATAACACAAACTAAGTCATGTATGCCAAAAGATTCTACACCTACATTATTAATTTCAAATTCTTTTTTACAATTTCCAAGTAAACGAGAATTAAATGAAAATTTCAAAATTGAAGTGCAAAAATTTGCCTACAAATATATAATGTTGTTTTGTATTATCATCATATGAATGTATTGGAATTTGTATCCCAAACTATTAAACAAAGAAAACTTGAAAGAAATAATTCAAAGTTCATCTTCTTCAAAGTTGCAGCCCTAAAAAGGATGTCCAGAAACATCAAACAGCAACCAAGCAACAACAACATCGTACTCCCAACACTAGAGAACAAATGAACGTCGCACAGATCTCACACCGTTCTAATGAAAACAGATCATGA

mRNA sequence

GCTGAAGAAACTCAATCTTCTCGCACTTGAGCTTCTATGAATCTGAAACTTCTAAGCTCAGTTGCTCGCTGTGGTGGCTATGGCGATTAACAACAATAACGGGGATTTCCTAATGCTCGAAGATCCGCCGCAACCAGCGTGGCGTGTTTCTGCAGATGCGGAGGTAATCGACGCCTTGGCCTACATCGACGACGACGACTATGTAGACCCTAGCAGAGGTCGATCGCTTAGTGGAGGAAGAGATGCGGCGTAGCTCCAAGAGACCGGCCGACTTTCTCAAAGACTTGCCTCCTATTCCCAAGTTCAAATTTGACGATCATCCAATGCTTGCCAGAGAGTATGAACGTACACTTCAGAAAGCTCAATGCTTACTACGTCATCAAGTGCTGAGATTGCAACAATTAGCTCAAGAACAGAATGAGAAGATGGAAAAAGTAAACCGCGAAAGAAAATTCCATCAACAAAACGCTGCATCTGAGCTTCATGTTTTGTCCACACAATGGAAGGAACTTTGCCAGAAAAATATTGAAATCCGAGTTGTATCCTCTCAAATAGAGGATCAAATCCAGGATCGAAGGAGAGAGGCAGAAAAAAAAGACTGCGGACATCTTTTGTTACTCTTAGCATATGCCGATATGGAAGATGAGTTCGGTTTATGGGAGAAGATTCAGTTGCTTTTGCTAACCACGTTATTGGTTCATCTTCTTCAAAGTTGCAGCCCTAAAAAGGATGTCCAGAAACATCAAACAGCAACCAAGCAACAACAACATCGTACTCCCAACACTAGAGAACAAATGAACGTCGCACAGATCTCACACCGTTCTAATGAAAACAGATCATGA

Coding sequence (CDS)

ATGCGGCGTAGCTCCAAGAGACCGGCCGACTTTCTCAAAGACTTGCCTCCTATTCCCAAGTTCAAATTTGACGATCATCCAATGCTTGCCAGAGAGTATGAACGTACACTTCAGAAAGCTCAATGCTTACTACGTCATCAAGTGCTGAGATTGCAACAATTAGCTCAAGAACAGAATGAGAAGATGGAAAAAGTAAACCGCGAAAGAAAATTCCATCAACAAAACGCTGCATCTGAGCTTCATGTTTTGTCCACACAATGGAAGGAACTTTGCCAGAAAAATATTGAAATCCGAGTTGTATCCTCTCAAATAGAGGATCAAATCCAGGATCGAAGGAGAGAGGCAGAAAAAAAAGACTGCGGACATCTTTTGTTACTCTTAGCATATGCCGATATGGAAGATGAGTTCGGTTTATGGGAGAAGATTCAGTTGCTTTTGCTAACCACGTTATTGGTTCATCTTCTTCAAAGTTGCAGCCCTAAAAAGGATGTCCAGAAACATCAAACAGCAACCAAGCAACAACAACATCGTACTCCCAACACTAGAGAACAAATGAACGTCGCACAGATCTCACACCGTTCTAATGAAAACAGATCATGA
Homology
[Close]
BLAST of CmoCh18G000460 vs. Swiss-Prot
Match: SPF27_ARATH (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-12
Identity = 36/69 (52.17%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 50  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQ 109
           R+Q+LAQEQNE++EKVNRERK+HQQ  + EL+ LS +W++LC KN+EI+   + +E QI 
Sbjct: 168 RMQRLAQEQNEEIEKVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQID 227

Query: 110 DRRREAEKK 119
             ++EA ++
Sbjct: 228 SFKKEAAER 236

[Close]
BLAST of CmoCh18G000460 vs. TrEMBL
Match: A0A067F690_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025332mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-30
Identity = 77/148 (52.03%), Postives = 99/148 (66.89%), Query Frame = 1 

Query: 1   MRRSSKRPADFLKDLPPIPKFKFDDHPMLAREYER------------------------- 60
           MRRSSK+P+DFLK+LPP+ KF+F++HPMLA+EYER                         
Sbjct: 56  MRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKR 115

Query: 61  --------TLQKAQCLLRHQVLRLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQW 116
                    LQKAQ L +HQ++R+Q+LAQEQNEK+E VNRERK+HQQN A EL+ LSTQW
Sbjct: 116 NDESAWKQALQKAQRLSQHQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQW 175

[Close]
BLAST of CmoCh18G000460 vs. TrEMBL
Match: D7SJ70_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02840 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-25
Identity = 79/179 (44.13%), Postives = 98/179 (54.75%), Query Frame = 1 

Query: 1   MRRSSKRPADFLKDLPPIPKFKFDDHPMLAR----------------------------- 60
           MRRSSK+P+DFLKDLPP+P F F +HPMLAR                             
Sbjct: 1   MRRSSKKPSDFLKDLPPLPPFGFHNHPMLAREYERVRAGKPPVALDMSRYGLEMPPMNKR 60

Query: 61  ----EYERTLQKAQCLLRHQVLRL----------------------------QQLAQEQN 119
                ++  LQKAQ LL+HQV+RL                            Q LA EQN
Sbjct: 61  NDETAWKHALQKAQRLLQHQVIRLENLELMSKHGADVWKQHNQRLEAYLSRMQALAMEQN 120

[Close]
BLAST of CmoCh18G000460 vs. TrEMBL
Match: W9RFJ2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017406 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.9e-25
Identity = 78/179 (43.58%), Postives = 98/179 (54.75%), Query Frame = 1 

Query: 1   MRRSSKRPADFLKDLPPIPKFKFDDHPMLAR----------------------------- 60
           MRRSSK+P+DFLKDLPP PK  F DHPMLAR                             
Sbjct: 61  MRRSSKKPSDFLKDLPPPPKSDFQDHPMLAREYERVHAAKPPVILDFNRDKLEAPPASKR 120

Query: 61  ----EYERTLQKAQCLLRHQVLRL----------------------------QQLAQEQN 119
                ++  LQ+AQC L+HQV+RL                            Q+LAQEQ 
Sbjct: 121 NDDSAWKLALQRAQCSLQHQVIRLENLDLTVKYGPEAWKHHNGRLEVLLSRMQKLAQEQF 180

[Close]
BLAST of CmoCh18G000460 vs. TrEMBL
Match: A0A067KSC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05347 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 75/180 (41.67%), Postives = 101/180 (56.11%), Query Frame = 1 

Query: 1   MRRSSKRPADFLKDLPPIPKFKFDDHPMLAR----------------------------- 60
           MRRS K+PADFLKDLPP+ KF F+++PMLA+                             
Sbjct: 59  MRRSHKKPADFLKDLPPLQKFSFENYPMLAKEYERVRAGKPPSTLDFSRYSHLDLPPANK 118

Query: 61  -----EYERTLQKAQCLLRHQVLRL----------------------------QQLAQEQ 119
                 +++ LQKA+CLL+HQV+RL                            Q+LA+EQ
Sbjct: 119 MNEETAWKQALQKAECLLQHQVIRLENLDLISKYGPNVWIQHNQQLEAMLSRMQKLAREQ 178

[Close]
BLAST of CmoCh18G000460 vs. TrEMBL
Match: V4UKY4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009263mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-24
Identity = 74/176 (42.05%), Postives = 98/176 (55.68%), Query Frame = 1 

Query: 1   MRRSSKRPADFLKDLPPIPKFKFDDHPMLAR----------------------------- 60
           MRRSSK+P+DFLK+LPP+ KF+F++HPMLA+                             
Sbjct: 56  MRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKR 115

Query: 61  ----EYERTLQKAQCLLRHQVLRL----------------------------QQLAQEQN 116
                +++ LQKAQ L +HQ++RL                            Q+LAQEQN
Sbjct: 116 NDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQN 175

[Close]
BLAST of CmoCh18G000460 vs. TAIR10
Match: AT3G18165.1 (AT3G18165.1 modifier of snc1,4)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-13
Identity = 36/69 (52.17%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 50  RLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQ 109
           R+Q+LAQEQNE++EKVNRERK+HQQ  + EL+ LS +W++LC KN+EI+   + +E QI 
Sbjct: 168 RMQRLAQEQNEEIEKVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQID 227

Query: 110 DRRREAEKK 119
             ++EA ++
Sbjct: 228 SFKKEAAER 236

[Close]
BLAST of CmoCh18G000460 vs. NCBI nr
Match: gi|641843967|gb|KDO62863.1| (hypothetical protein CISIN_1g025332mg [Citrus sinensis])

HSP 1 Score: 140.2 bits (352), Expect = 3.9e-30
Identity = 77/148 (52.03%), Postives = 99/148 (66.89%), Query Frame = 1 

Query: 1   MRRSSKRPADFLKDLPPIPKFKFDDHPMLAREYER------------------------- 60
           MRRSSK+P+DFLK+LPP+ KF+F++HPMLA+EYER                         
Sbjct: 56  MRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKR 115

Query: 61  --------TLQKAQCLLRHQVLRLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQW 116
                    LQKAQ L +HQ++R+Q+LAQEQNEK+E VNRERK+HQQN A EL+ LSTQW
Sbjct: 116 NDESAWKQALQKAQRLSQHQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQW 175

[Close]
BLAST of CmoCh18G000460 vs. NCBI nr
Match: gi|297734284|emb|CBI15531.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 79/179 (44.13%), Postives = 98/179 (54.75%), Query Frame = 1 

Query: 1   MRRSSKRPADFLKDLPPIPKFKFDDHPMLAR----------------------------- 60
           MRRSSK+P+DFLKDLPP+P F F +HPMLAR                             
Sbjct: 1   MRRSSKKPSDFLKDLPPLPPFGFHNHPMLAREYERVRAGKPPVALDMSRYGLEMPPMNKR 60

Query: 61  ----EYERTLQKAQCLLRHQVLRL----------------------------QQLAQEQN 119
                ++  LQKAQ LL+HQV+RL                            Q LA EQN
Sbjct: 61  NDETAWKHALQKAQRLLQHQVIRLENLELMSKHGADVWKQHNQRLEAYLSRMQALAMEQN 120

[Close]
BLAST of CmoCh18G000460 vs. NCBI nr
Match: gi|731426559|ref|XP_010663657.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Vitis vinifera])

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 79/179 (44.13%), Postives = 98/179 (54.75%), Query Frame = 1 

Query: 1   MRRSSKRPADFLKDLPPIPKFKFDDHPMLAR----------------------------- 60
           MRRSSK+P+DFLKDLPP+P F F +HPMLAR                             
Sbjct: 50  MRRSSKKPSDFLKDLPPLPPFGFHNHPMLAREYERVRAGKPPVALDMSRYGLEMPPMNKR 109

Query: 61  ----EYERTLQKAQCLLRHQVLRL----------------------------QQLAQEQN 119
                ++  LQKAQ LL+HQV+RL                            Q LA EQN
Sbjct: 110 NDETAWKHALQKAQRLLQHQVIRLENLELMSKHGADVWKQHNQRLEAYLSRMQALAMEQN 169

[Close]
BLAST of CmoCh18G000460 vs. NCBI nr
Match: gi|703102926|ref|XP_010097595.1| (hypothetical protein L484_017406 [Morus notabilis])

HSP 1 Score: 122.5 bits (306), Expect = 8.5e-25
Identity = 78/179 (43.58%), Postives = 98/179 (54.75%), Query Frame = 1 

Query: 1   MRRSSKRPADFLKDLPPIPKFKFDDHPMLAR----------------------------- 60
           MRRSSK+P+DFLKDLPP PK  F DHPMLAR                             
Sbjct: 61  MRRSSKKPSDFLKDLPPPPKSDFQDHPMLAREYERVHAAKPPVILDFNRDKLEAPPASKR 120

Query: 61  ----EYERTLQKAQCLLRHQVLRL----------------------------QQLAQEQN 119
                ++  LQ+AQC L+HQV+RL                            Q+LAQEQ 
Sbjct: 121 NDDSAWKLALQRAQCSLQHQVIRLENLDLTVKYGPEAWKHHNGRLEVLLSRMQKLAQEQF 180

[Close]
BLAST of CmoCh18G000460 vs. NCBI nr
Match: gi|828310969|ref|XP_012571180.1| (PREDICTED: pre-mRNA-splicing factor SPF27 homolog isoform X1 [Cicer arietinum])

HSP 1 Score: 122.5 bits (306), Expect = 8.5e-25
Identity = 75/179 (41.90%), Postives = 96/179 (53.63%), Query Frame = 1 

Query: 1   MRRSSKRPADFLKDLPPIPKFKFDDHPMLAREYERT------------------------ 60
           MRRSSK+PADFLKD PP+P F F+D+PM+ REYER                         
Sbjct: 57  MRRSSKKPADFLKDFPPLPTFNFEDYPMIGREYERVRAGRPPISLDRSRYELEIPAMNKR 116

Query: 61  ---------LQKAQCLLRHQVLRL----------------------------QQLAQEQN 119
                    LQ+AQ LL++Q +R+                            Q+LAQEQN
Sbjct: 117 NDETAWKQALQRAQRLLQYQTMRMENLELLLKYGPDAWKQHNRRLEVYLTRMQKLAQEQN 176

The following BLAST results are available for this feature:
BLAST of CmoCh18G000460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SPF27_ARATH2.2e-1252.17Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1[more]
BLAST of CmoCh18G000460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067F690_CITSI2.7e-3052.03Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025332mg PE=4 SV=1[more]
D7SJ70_VITVI1.6e-2544.13Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02840 PE=4 SV=... [more]
W9RFJ2_9ROSA5.9e-2543.58Uncharacterized protein OS=Morus notabilis GN=L484_017406 PE=4 SV=1[more]
A0A067KSC7_JATCU1.0e-2441.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05347 PE=4 SV=1[more]
V4UKY4_9ROSI8.5e-2442.05Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009263mg PE=4 SV=1[more]
BLAST of CmoCh18G000460 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18165.11.2e-1352.17 modifier of snc1,4[more]
BLAST of CmoCh18G000460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|641843967|gb|KDO62863.1|3.9e-3052.03hypothetical protein CISIN_1g025332mg [Citrus sinensis][more]
gi|297734284|emb|CBI15531.3|2.2e-2544.13unnamed protein product [Vitis vinifera][more]
gi|731426559|ref|XP_010663657.1|2.2e-2544.13PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Vitis vinifera][more]
gi|703102926|ref|XP_010097595.1|8.5e-2543.58hypothetical protein L484_017406 [Morus notabilis][more]
gi|828310969|ref|XP_012571180.1|8.5e-2541.90PREDICTED: pre-mRNA-splicing factor SPF27 homolog isoform X1 [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008409SPF27
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009870 defense response signaling pathway, resistance gene-dependent
biological_process GO:0010204 defense response signaling pathway, resistance gene-independent
biological_process GO:0042742 defense response to bacterium
biological_process GO:0050832 defense response to fungus
biological_process GO:0006397 mRNA processing
biological_process GO:0001510 RNA methylation
cellular_component GO:0005730 nucleolus
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0000974 Prp19 complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G000460.1CmoCh18G000460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008409Pre-mRNA-splicing factor SPF27PFAMPF05700BCAS2coord: 44..117
score: 6.7
NoneNo IPR availableunknownCoilCoilcoord: 48..75
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh18G000460Cucsa.121810Cucumber (Gy14) v1cgycmoB0315
CmoCh18G000460CmaCh13G010010Cucurbita maxima (Rimu)cmacmoB224
CmoCh18G000460CmaCh18G000590Cucurbita maxima (Rimu)cmacmoB408
CmoCh18G000460Cla018468Watermelon (97103) v1cmowmB389
CmoCh18G000460Csa1G042680Cucumber (Chinese Long) v2cmocuB380
CmoCh18G000460MELO3C002120Melon (DHL92) v3.5.1cmomeB356
CmoCh18G000460ClCG04G010780Watermelon (Charleston Gray)cmowcgB357
CmoCh18G000460CSPI01G07080Wild cucumber (PI 183967)cmocpiB383
CmoCh18G000460Lsi02G002200Bottle gourd (USVL1VR-Ls)cmolsiB356
CmoCh18G000460Cp4.1LG09g11170Cucurbita pepo (Zucchini)cmocpeB377
CmoCh18G000460Cp4.1LG20g01510Cucurbita pepo (Zucchini)cmocpeB404
CmoCh18G000460MELO3C002120.2Melon (DHL92) v3.6.1cmomedB408
CmoCh18G000460CsaV3_1G007020Cucumber (Chinese Long) v3cmocucB0457
CmoCh18G000460Cla97C04G077600Watermelon (97103) v2cmowmbB402
CmoCh18G000460Bhi08G001062Wax gourdcmowgoB0516
CmoCh18G000460CsGy1G006890Cucumber (Gy14) v2cgybcmoB082
CmoCh18G000460Carg22734Silver-seed gourdcarcmoB0699
CmoCh18G000460Carg04837Silver-seed gourdcarcmoB0527
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh18G000460CmoCh13G010370Cucurbita moschata (Rifu)cmocmoB171
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh18G000460Silver-seed gourdcarcmoB0812
CmoCh18G000460Wax gourdcmowgoB0546
CmoCh18G000460Cucurbita moschata (Rifu)cmocmoB064
CmoCh18G000460Cucurbita pepo (Zucchini)cmocpeB391
CmoCh18G000460Cucurbita pepo (Zucchini)cmocpeB413
CmoCh18G000460Bottle gourd (USVL1VR-Ls)cmolsiB377
CmoCh18G000460Cucumber (Gy14) v2cgybcmoB086